Ggra9388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9388.t1
Unique NameGgra9388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:287563..289218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272134.KB731324_gene3457
Preferred namegatA
PFAMsAmidase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00010
KEGG koko:K02433
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Evalue4.01e-181
EggNOG OGsCOG0154@1|root,COG0154@2|Bacteria,1G0HS@1117|Cyanobacteria,1H6YQ@1150|Oscillatoriales
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9388Ggra9388Gracilaria gracilis GNS1m malegenetig00000883_pilon 287563..289218 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9388.t1.stop1Ggra9388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 287563..287565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9388.t1.CDS1Ggra9388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 287563..289218 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9388.t1.exon1Ggra9388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 287563..289218 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9388.t1.start1Ggra9388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 289216..289218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9388.t1Ggra9388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 287563..289218 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9388.t1 ID=Ggra9388.t1|Name=Ggra9388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MDSLPLDLSRRERLQPSMSTATFITSTNSVSRLLSTHHTTFHRQFRRSNP
LRNVTRALASQSITDIVKSIRSRETSASKVLQQSLTRIESIEPHVNAFLT
VDVEHAQAQANRIDEQVAQGKDPGPLAGVPIAIKDNLSTQGIPTTAASRI
LDGFIPAYNATAVQRLLDAGAVILGKTNLDEFGMGSSTENSAFATTRNPW
DLSSVPGGSSGGSAVAVAADMCPVALGSDTGGSIRQPASFCGVTGFKPSY
GRVSRHGLLSYGSSLDTVGPICRNAQDAALLMQIIAGPDGMDSTASNTSV
PPFTELLEGDLSDVRIGVVHESLSSGVNTEVAEAVQGALDVFRSLGASVE
VVSVPLLSVAAPAYYVITNSEASANLARYDGVRYGVREQDAKNSSDMYAK
SRSSGFGWEVKRRIMGGTYALSSGYYDAYYLKAQRVRTALTNSIKDKFAE
GFDFLVTPVAPTPAFGIGEKISDPIWMMLNDIFTVPASLAGLPAISVPCG
MTSKNLPIGLQVIGSFMKDELVLKAAHAYQQNTAHHKLLPEPVEGKVALS
A*
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spliced messenger RNA

>Ggra9388.t1 ID=Ggra9388.t1|Name=Ggra9388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000883_pilon:287563..289218- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTTTACCATTGGATTTGAGTCGACGCGAACGCTTGCAACCATC
AATGTCCACTGCCACCTTCATCACCTCAACCAATTCAGTCTCCCGCCTGC
TTTCCACTCATCACACAACCTTTCACAGACAATTTCGACGTTCAAACCCA
CTGCGAAACGTGACCCGTGCGCTTGCGTCGCAGTCCATCACTGACATTGT
CAAATCGATCCGTTCTCGTGAAACATCCGCATCAAAAGTTTTGCAGCAAT
CGCTCACTCGAATCGAGTCCATCGAACCGCATGTCAACGCGTTTCTTACT
GTTGACGTGGAGCACGCACAGGCGCAAGCAAACAGAATAGATGAACAAGT
AGCGCAAGGGAAAGATCCGGGCCCGCTGGCAGGAGTTCCAATAGCCATTA
AGGACAACCTTTCCACGCAAGGGATACCTACAACCGCTGCGAGTCGCATT
CTAGATGGCTTCATCCCCGCTTATAATGCCACCGCTGTACAAAGACTGCT
TGACGCTGGTGCTGTTATTCTAGGGAAGACCAATCTCGATGAGTTTGGAA
TGGGAAGCTCGACGGAAAATTCGGCCTTTGCAACCACTCGAAATCCCTGG
GATCTGTCTTCTGTGCCTGGTGGCTCCTCCGGAGGTTCAGCTGTCGCTGT
TGCAGCCGATATGTGTCCCGTGGCATTGGGTTCGGATACAGGGGGAAGCA
TTCGACAGCCGGCGTCATTCTGCGGTGTAACGGGCTTCAAGCCCTCATAT
GGTCGGGTGAGCCGTCATGGTCTTCTTTCTTATGGTTCTTCCCTTGACAC
AGTTGGGCCGATATGTCGCAATGCTCAAGATGCCGCACTTTTGATGCAAA
TTATTGCTGGGCCTGATGGGATGGATTCTACAGCGAGTAACACTTCTGTG
CCCCCATTTACAGAACTTTTGGAAGGAGACCTTTCTGATGTGCGGATTGG
CGTTGTTCATGAATCACTGTCTTCTGGAGTGAATACTGAAGTAGCTGAAG
CGGTACAAGGTGCGTTGGATGTATTTAGGAGTCTTGGGGCTAGTGTTGAG
GTGGTGTCAGTACCGCTGTTGTCGGTGGCCGCTCCAGCGTACTACGTGAT
CACAAATTCTGAAGCCTCGGCCAATTTAGCGAGGTACGACGGTGTCAGAT
ACGGCGTGCGGGAGCAAGATGCCAAGAACTCATCGGACATGTACGCAAAG
TCACGTTCTTCTGGTTTCGGATGGGAGGTGAAGCGCCGAATCATGGGAGG
CACGTACGCACTGTCTAGCGGATATTATGACGCGTACTACCTCAAAGCTC
AGCGAGTGCGAACAGCACTAACCAACTCCATAAAGGACAAGTTCGCGGAA
GGTTTTGATTTTCTGGTTACTCCGGTCGCACCAACACCAGCGTTCGGAAT
TGGAGAGAAGATATCTGACCCCATTTGGATGATGCTGAATGACATCTTTA
CTGTTCCGGCAAGTCTTGCGGGACTTCCGGCCATCAGTGTGCCTTGCGGG
ATGACGTCAAAGAATTTGCCCATTGGACTACAAGTTATTGGCTCGTTCAT
GAAGGACGAACTTGTTTTGAAGGCCGCCCACGCGTATCAACAAAACACGG
CTCACCACAAGCTTTTGCCAGAACCAGTGGAAGGCAAAGTCGCATTGTCC
GCGTAA
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protein sequence of Ggra9388.t1

>Ggra9388.t1 ID=Ggra9388.t1|Name=Ggra9388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MDSLPLDLSRRERLQPSMSTATFITSTNSVSRLLSTHHTTFHRQFRRSNP
LRNVTRALASQSITDIVKSIRSRETSASKVLQQSLTRIESIEPHVNAFLT
VDVEHAQAQANRIDEQVAQGKDPGPLAGVPIAIKDNLSTQGIPTTAASRI
LDGFIPAYNATAVQRLLDAGAVILGKTNLDEFGMGSSTENSAFATTRNPW
DLSSVPGGSSGGSAVAVAADMCPVALGSDTGGSIRQPASFCGVTGFKPSY
GRVSRHGLLSYGSSLDTVGPICRNAQDAALLMQIIAGPDGMDSTASNTSV
PPFTELLEGDLSDVRIGVVHESLSSGVNTEVAEAVQGALDVFRSLGASVE
VVSVPLLSVAAPAYYVITNSEASANLARYDGVRYGVREQDAKNSSDMYAK
SRSSGFGWEVKRRIMGGTYALSSGYYDAYYLKAQRVRTALTNSIKDKFAE
GFDFLVTPVAPTPAFGIGEKISDPIWMMLNDIFTVPASLAGLPAISVPCG
MTSKNLPIGLQVIGSFMKDELVLKAAHAYQQNTAHHKLLPEPVEGKVALS
A*
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mRNA from alignment at tig00000883_pilon:287563..289218-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9388.t1 ID=Ggra9388.t1|Name=Ggra9388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000883_pilon:287563..289218- (Gracilaria gracilis GNS1m male)
ATGGATTCTTTACCATTGGATTTGAGTCGACGCGAACGCTTGCAACCATC
AATGTCCACTGCCACCTTCATCACCTCAACCAATTCAGTCTCCCGCCTGC
TTTCCACTCATCACACAACCTTTCACAGACAATTTCGACGTTCAAACCCA
CTGCGAAACGTGACCCGTGCGCTTGCGTCGCAGTCCATCACTGACATTGT
CAAATCGATCCGTTCTCGTGAAACATCCGCATCAAAAGTTTTGCAGCAAT
CGCTCACTCGAATCGAGTCCATCGAACCGCATGTCAACGCGTTTCTTACT
GTTGACGTGGAGCACGCACAGGCGCAAGCAAACAGAATAGATGAACAAGT
AGCGCAAGGGAAAGATCCGGGCCCGCTGGCAGGAGTTCCAATAGCCATTA
AGGACAACCTTTCCACGCAAGGGATACCTACAACCGCTGCGAGTCGCATT
CTAGATGGCTTCATCCCCGCTTATAATGCCACCGCTGTACAAAGACTGCT
TGACGCTGGTGCTGTTATTCTAGGGAAGACCAATCTCGATGAGTTTGGAA
TGGGAAGCTCGACGGAAAATTCGGCCTTTGCAACCACTCGAAATCCCTGG
GATCTGTCTTCTGTGCCTGGTGGCTCCTCCGGAGGTTCAGCTGTCGCTGT
TGCAGCCGATATGTGTCCCGTGGCATTGGGTTCGGATACAGGGGGAAGCA
TTCGACAGCCGGCGTCATTCTGCGGTGTAACGGGCTTCAAGCCCTCATAT
GGTCGGGTGAGCCGTCATGGTCTTCTTTCTTATGGTTCTTCCCTTGACAC
AGTTGGGCCGATATGTCGCAATGCTCAAGATGCCGCACTTTTGATGCAAA
TTATTGCTGGGCCTGATGGGATGGATTCTACAGCGAGTAACACTTCTGTG
CCCCCATTTACAGAACTTTTGGAAGGAGACCTTTCTGATGTGCGGATTGG
CGTTGTTCATGAATCACTGTCTTCTGGAGTGAATACTGAAGTAGCTGAAG
CGGTACAAGGTGCGTTGGATGTATTTAGGAGTCTTGGGGCTAGTGTTGAG
GTGGTGTCAGTACCGCTGTTGTCGGTGGCCGCTCCAGCGTACTACGTGAT
CACAAATTCTGAAGCCTCGGCCAATTTAGCGAGGTACGACGGTGTCAGAT
ACGGCGTGCGGGAGCAAGATGCCAAGAACTCATCGGACATGTACGCAAAG
TCACGTTCTTCTGGTTTCGGATGGGAGGTGAAGCGCCGAATCATGGGAGG
CACGTACGCACTGTCTAGCGGATATTATGACGCGTACTACCTCAAAGCTC
AGCGAGTGCGAACAGCACTAACCAACTCCATAAAGGACAAGTTCGCGGAA
GGTTTTGATTTTCTGGTTACTCCGGTCGCACCAACACCAGCGTTCGGAAT
TGGAGAGAAGATATCTGACCCCATTTGGATGATGCTGAATGACATCTTTA
CTGTTCCGGCAAGTCTTGCGGGACTTCCGGCCATCAGTGTGCCTTGCGGG
ATGACGTCAAAGAATTTGCCCATTGGACTACAAGTTATTGGCTCGTTCAT
GAAGGACGAACTTGTTTTGAAGGCCGCCCACGCGTATCAACAAAACACGG
CTCACCACAAGCTTTTGCCAGAACCAGTGGAAGGCAAAGTCGCATTGTCC
GCGTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:287563..289218-

>Ggra9388.t1 ID=Ggra9388.t1|Name=Ggra9388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000883_pilon:287563..289218- (Gracilaria gracilis GNS1m male)
ATGGATTCTTTACCATTGGATTTGAGTCGACGCGAACGCTTGCAACCATC
AATGTCCACTGCCACCTTCATCACCTCAACCAATTCAGTCTCCCGCCTGC
TTTCCACTCATCACACAACCTTTCACAGACAATTTCGACGTTCAAACCCA
CTGCGAAACGTGACCCGTGCGCTTGCGTCGCAGTCCATCACTGACATTGT
CAAATCGATCCGTTCTCGTGAAACATCCGCATCAAAAGTTTTGCAGCAAT
CGCTCACTCGAATCGAGTCCATCGAACCGCATGTCAACGCGTTTCTTACT
GTTGACGTGGAGCACGCACAGGCGCAAGCAAACAGAATAGATGAACAAGT
AGCGCAAGGGAAAGATCCGGGCCCGCTGGCAGGAGTTCCAATAGCCATTA
AGGACAACCTTTCCACGCAAGGGATACCTACAACCGCTGCGAGTCGCATT
CTAGATGGCTTCATCCCCGCTTATAATGCCACCGCTGTACAAAGACTGCT
TGACGCTGGTGCTGTTATTCTAGGGAAGACCAATCTCGATGAGTTTGGAA
TGGGAAGCTCGACGGAAAATTCGGCCTTTGCAACCACTCGAAATCCCTGG
GATCTGTCTTCTGTGCCTGGTGGCTCCTCCGGAGGTTCAGCTGTCGCTGT
TGCAGCCGATATGTGTCCCGTGGCATTGGGTTCGGATACAGGGGGAAGCA
TTCGACAGCCGGCGTCATTCTGCGGTGTAACGGGCTTCAAGCCCTCATAT
GGTCGGGTGAGCCGTCATGGTCTTCTTTCTTATGGTTCTTCCCTTGACAC
AGTTGGGCCGATATGTCGCAATGCTCAAGATGCCGCACTTTTGATGCAAA
TTATTGCTGGGCCTGATGGGATGGATTCTACAGCGAGTAACACTTCTGTG
CCCCCATTTACAGAACTTTTGGAAGGAGACCTTTCTGATGTGCGGATTGG
CGTTGTTCATGAATCACTGTCTTCTGGAGTGAATACTGAAGTAGCTGAAG
CGGTACAAGGTGCGTTGGATGTATTTAGGAGTCTTGGGGCTAGTGTTGAG
GTGGTGTCAGTACCGCTGTTGTCGGTGGCCGCTCCAGCGTACTACGTGAT
CACAAATTCTGAAGCCTCGGCCAATTTAGCGAGGTACGACGGTGTCAGAT
ACGGCGTGCGGGAGCAAGATGCCAAGAACTCATCGGACATGTACGCAAAG
TCACGTTCTTCTGGTTTCGGATGGGAGGTGAAGCGCCGAATCATGGGAGG
CACGTACGCACTGTCTAGCGGATATTATGACGCGTACTACCTCAAAGCTC
AGCGAGTGCGAACAGCACTAACCAACTCCATAAAGGACAAGTTCGCGGAA
GGTTTTGATTTTCTGGTTACTCCGGTCGCACCAACACCAGCGTTCGGAAT
TGGAGAGAAGATATCTGACCCCATTTGGATGATGCTGAATGACATCTTTA
CTGTTCCGGCAAGTCTTGCGGGACTTCCGGCCATCAGTGTGCCTTGCGGG
ATGACGTCAAAGAATTTGCCCATTGGACTACAAGTTATTGGCTCGTTCAT
GAAGGACGAACTTGTTTTGAAGGCCGCCCACGCGTATCAACAAAACACGG
CTCACCACAAGCTTTTGCCAGAACCAGTGGAAGGCAAAGTCGCATTGTCC
GCGTAA
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