Ggra9387.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9387.t1
Unique NameGgra9387.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:285289..286369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9387Ggra9387Gracilaria gracilis GNS1m malegenetig00000883_pilon 285289..287265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1Ggra9387.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 285289..286369 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1.start1Ggra9387.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 285289..285291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1.CDS1Ggra9387.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 285289..286229 +
Ggra9387.t1.CDS2Ggra9387.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 286330..286369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1.exon1Ggra9387.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 285289..286229 +
Ggra9387.t1.exon2Ggra9387.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 286330..286369 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1.intron1Ggra9387.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 286230..286329 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9387.t1.stop1Ggra9387.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 286367..286369 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9387.t1 ID=Ggra9387.t1|Name=Ggra9387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MMEASASDDDESWGMDDFNRDYYDELKEEYKDNKKVHIFAKEDYELHERD
AAYLFDNRARDLEQIRKEMESRPKAKLDEHTTVDDVMLLSDMRDEIEIEG
FKKTLLTHDAINGKGWQDPMPESDLDGDPEHIHFRKAPKPEKDPRSEDIL
ASLEETNLLTSKQYGCEQDERDALNSSYDMMQTEFWDEPIEPFSLSGNVD
VPDRDEFARWQAEAKARGGTLTRGDSYFFPPYNDPMGKIERPDPPEEHDV
PHQLNSLVNANRGVWQGTAKVFALESGDKFAPQLSACFSLHSSVRKGAGD
SLEWTSTASGGSLEMASVGKTPSFSQ*
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spliced messenger RNA

>Ggra9387.t1 ID=Ggra9387.t1|Name=Ggra9387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000883_pilon:285289..286369+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGA
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protein sequence of Ggra9387.t1

>Ggra9387.t1 ID=Ggra9387.t1|Name=Ggra9387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MMEASASDDDESWGMDDFNRDYYDELKEEYKDNKKVHIFAKEDYELHERD
AAYLFDNRARDLEQIRKEMESRPKAKLDEHTTVDDVMLLSDMRDEIEIEG
FKKTLLTHDAINGKGWQDPMPESDLDGDPEHIHFRKAPKPEKDPRSEDIL
ASLEETNLLTSKQYGCEQDERDALNSSYDMMQTEFWDEPIEPFSLSGNVD
VPDRDEFARWQAEAKARGGTLTRGDSYFFPPYNDPMGKIERPDPPEEHDV
PHQLNSLVNANRGVWQGTAKVFALESGDKFAPQLSACFSLHSSVRKGAGD
SLEWTSTASGGSLEMASVGKTPSFSQ*
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mRNA from alignment at tig00000883_pilon:285289..286369+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9387.t1 ID=Ggra9387.t1|Name=Ggra9387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1081bp|location=Sequence derived from alignment at tig00000883_pilon:285289..286369+ (Gracilaria gracilis GNS1m male)
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAGTATGTGTC
AGACGTTTGTATTCCTTCACCAAAACATGGGGAAGCACTTGTACCTGGTC
GAGCGGTATCTGCGGAGGGTGGCTATGTTGTGTGCCGGAAGAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:285289..286369+

>Ggra9387.t1 ID=Ggra9387.t1|Name=Ggra9387.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000883_pilon:285289..286369+ (Gracilaria gracilis GNS1m male)
ATGATGGAGGCCAGTGCTTCAGATGATGATGAAAGTTGGGGCATGGACGA
CTTTAATCGAGATTACTACGATGAGCTCAAGGAAGAGTACAAGGACAACA
AGAAAGTACATATTTTCGCTAAGGAAGACTATGAACTACACGAGAGAGAT
GCGGCCTATTTATTTGACAATCGCGCTCGCGATTTGGAACAGATTAGGAA
AGAGATGGAATCACGGCCAAAAGCAAAGCTAGATGAACACACCACTGTCG
ACGATGTAATGCTGCTCTCTGATATGCGCGACGAGATCGAAATCGAAGGT
TTCAAGAAGACATTACTGACGCATGACGCCATAAACGGAAAAGGATGGCA
GGATCCGATGCCTGAAAGTGACCTTGACGGTGACCCAGAACACATTCATT
TTCGCAAAGCACCCAAACCGGAAAAAGATCCCCGATCTGAGGATATTCTT
GCATCTCTCGAAGAAACAAACTTATTGACAAGTAAGCAATATGGGTGCGA
GCAGGATGAGAGAGACGCTCTAAACAGCAGCTATGATATGATGCAAACAG
AATTCTGGGACGAACCTATAGAACCTTTTAGCTTAAGCGGCAACGTCGAC
GTGCCAGACCGAGACGAATTCGCTCGCTGGCAAGCAGAAGCAAAAGCGCG
AGGTGGAACACTCACCAGAGGAGATTCGTACTTTTTTCCGCCTTACAATG
ACCCAATGGGCAAAATTGAACGACCGGATCCACCTGAAGAGCACGATGTA
CCGCATCAACTAAACTCCCTTGTCAATGCAAATCGCGGCGTATGGCAGGG
CACCGCCAAAGTGTTTGCGCTCGAATCTGGCGACAAGTTTGCTCCTCAGT
TGTCTGCATGCTTCTCCCTGCACAGCTCTGTCCGAAAGGGTGCGGGTGAC
AGTCTTGAATGGACATCAACGGCAAGTGGTGGATCACTAGAAATGGCATC
AGTCGGAAAGACACCGAGTTTTTCACAATGA
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