Ggra9386.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9386.t1
Unique Name	Ggra9386.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:283522..284727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707216.1
PFAMs	AAA
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	2.12e-158
EggNOG OGs	COG0464@1\|root,KOG0730@2759\|Eukaryota
Description	ATP binding
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9386	Ggra9386	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 283522..284727 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9386.t1.start1	Ggra9386.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 283522..283524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9386.t1.CDS1	Ggra9386.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 283522..284727 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9386.t1.exon1	Ggra9386.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 283522..284727 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9386.t1.stop1	Ggra9386.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 284725..284727 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9386.t1	Ggra9386.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 283522..284727 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:283522..284727+
coding sequence from alignment at tig00000883_pilon:283522..284727+

mRNA sequence

>Ggra9386.t1 ID=Ggra9386.t1|Name=Ggra9386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MAFIPTGATPLRGSRSSSARLLCSPRPSRASRSVSTPRMTDTEAPEYETP
VTRRLSDALKEKDVEARKTREENEKKERAKMEKRMARQRKIDKLNSIPDD
LEVGSVNQHMYEAGVQEELALLDKDLVGLKPVKTRVAEIAALLIVDKLRK
GLGLETAVPSLHMSFTGAPGTGKTTVAMRMGQLLKRMGYCRQGHLVVATR
DDLVGQYVGHTAPKTKEVIKKAFGGVLLIDEAYYLYNASNDKDYGQESIE
ILLQVMEHQRDDLVVVLAGYEDRMDRFYGFNPGMSSRIGNHINFPNYSAE
ELVAIAKVMSRELQYVFAEGSETVFKEYVEKRMQMPYFSNARTVRNAVDR
ARMRASIRLFNEAMTPGSDGMVSKTDLMTIMAEDLVSAKELEARGDSAIV
E*

spliced messenger RNA

>Ggra9386.t1 ID=Ggra9386.t1|Name=Ggra9386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000883_pilon:283522..284727+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCATTCCGACTGGTGCTACGCCGCTGCGTGGCAGTCGCTCTTC
ATCGGCGCGTTTGCTGTGTTCGCCGCGGCCTTCGCGCGCGTCGCGCAGCG
TGTCCACGCCGCGCATGACGGATACGGAGGCGCCGGAGTATGAGACGCCG
GTCACGCGACGTTTATCAGACGCGCTgaaggagaaggatgtggaggcgcg
caagacacgcgaagagaatgagaagaaggagagagcgaagatggagaagA
GGATGGCTCGCCAACGAAAGATTGACAAGTTGAATAGTATTCCGGATGAC
CTGGAGGTTGGTAGTGTCAATCAGCATATGTATGAAGCGGGCGTTCAGGA
GGAATTGGCGCTTTTGGATAAAGACCTGGTTGGTTTGAAGCCGGTCAAGA
CCAGGGTTGCCGAGATCGCTGCTCTGTTGATTGTTGACAAGTTGAGAAAG
GGGCTTGGTTTGGAAACTGCTGTGCCTTCGTTGCACATGTCTTTCACTGG
TGCGCCAGGTACTGGAAAGACTACGGTGGCCATGAGGATGGGTCAATTGT
TGAAGAGGATGGGATATTGTCGTCAGGGACATCTTGTGGTTGCTACTCGT
GATGACCTTGTTGGACAATATGTCGGTCACACTGCACCCAAGACAAAAGA
AGTTATTAAGAAGGCATTCGGAGGAGTGTTGCTCATTGACGAGGCCTACT
ATCTGTACAATGCCTCCAATGATAAGGATTATGGACAAGAGTCTATTGAG
ATTCTTCTGCAGGTCATGGAGCATCAGCGCGATGACTTGGTTGTTGTCTT
GGCTGGTTATGAAGACCGTATGGATAGGTTCTACGGCTTCAACCCTGGTA
TGAGCTCTCGTATTGGAAACCATATCAACTTCCCTAACTACTCGGCCGAA
GAGCTGGTTGCCATTGCGAAGGTCATGAGTCGTGAGCTGCAGTACGTGTT
TGCAGAGGGCTCTGAGACCGTGTTCAAGGAGTATGTTGAGAAGCGTATGC
AGATGCCGTACTTCTCCAACGCCAGAACTGTGCGTAACGCTGTGGATCGC
GCCAGGATGAGAGCTTCCATCCGTTTGTTCAATGAGGCTATGACCCCTGG
TTCTGACGGCATGGTTTCCAAGACTGATCTGATGACCATTATGGCGGAGG
ACTTGGTCTCCGCCAAGGAACTTGAGGCTCGTGGTGATAGCGCAATCGTT
GAATAA

protein sequence of Ggra9386.t1

>Ggra9386.t1 ID=Ggra9386.t1|Name=Ggra9386.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MAFIPTGATPLRGSRSSSARLLCSPRPSRASRSVSTPRMTDTEAPEYETP
VTRRLSDALKEKDVEARKTREENEKKERAKMEKRMARQRKIDKLNSIPDD
LEVGSVNQHMYEAGVQEELALLDKDLVGLKPVKTRVAEIAALLIVDKLRK
GLGLETAVPSLHMSFTGAPGTGKTTVAMRMGQLLKRMGYCRQGHLVVATR
DDLVGQYVGHTAPKTKEVIKKAFGGVLLIDEAYYLYNASNDKDYGQESIE
ILLQVMEHQRDDLVVVLAGYEDRMDRFYGFNPGMSSRIGNHINFPNYSAE
ELVAIAKVMSRELQYVFAEGSETVFKEYVEKRMQMPYFSNARTVRNAVDR
ARMRASIRLFNEAMTPGSDGMVSKTDLMTIMAEDLVSAKELEARGDSAIV
E*

mRNA from alignment at tig00000883_pilon:283522..284727+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9386.t1 ID=Ggra9386.t1|Name=Ggra9386.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000883_pilon:283522..284727+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCATTCCGACTGGTGCTACGCCGCTGCGTGGCAGTCGCTCTTC
ATCGGCGCGTTTGCTGTGTTCGCCGCGGCCTTCGCGCGCGTCGCGCAGCG
TGTCCACGCCGCGCATGACGGATACGGAGGCGCCGGAGTATGAGACGCCG
GTCACGCGACGTTTATCAGACGCGCTgaaggagaaggatgtggaggcgcg
caagacacgcgaagagaatgagaagaaggagagagcgaagatggagaagA
GGATGGCTCGCCAACGAAAGATTGACAAGTTGAATAGTATTCCGGATGAC
CTGGAGGTTGGTAGTGTCAATCAGCATATGTATGAAGCGGGCGTTCAGGA
GGAATTGGCGCTTTTGGATAAAGACCTGGTTGGTTTGAAGCCGGTCAAGA
CCAGGGTTGCCGAGATCGCTGCTCTGTTGATTGTTGACAAGTTGAGAAAG
GGGCTTGGTTTGGAAACTGCTGTGCCTTCGTTGCACATGTCTTTCACTGG
TGCGCCAGGTACTGGAAAGACTACGGTGGCCATGAGGATGGGTCAATTGT
TGAAGAGGATGGGATATTGTCGTCAGGGACATCTTGTGGTTGCTACTCGT
GATGACCTTGTTGGACAATATGTCGGTCACACTGCACCCAAGACAAAAGA
AGTTATTAAGAAGGCATTCGGAGGAGTGTTGCTCATTGACGAGGCCTACT
ATCTGTACAATGCCTCCAATGATAAGGATTATGGACAAGAGTCTATTGAG
ATTCTTCTGCAGGTCATGGAGCATCAGCGCGATGACTTGGTTGTTGTCTT
GGCTGGTTATGAAGACCGTATGGATAGGTTCTACGGCTTCAACCCTGGTA
TGAGCTCTCGTATTGGAAACCATATCAACTTCCCTAACTACTCGGCCGAA
GAGCTGGTTGCCATTGCGAAGGTCATGAGTCGTGAGCTGCAGTACGTGTT
TGCAGAGGGCTCTGAGACCGTGTTCAAGGAGTATGTTGAGAAGCGTATGC
AGATGCCGTACTTCTCCAACGCCAGAACTGTGCGTAACGCTGTGGATCGC
GCCAGGATGAGAGCTTCCATCCGTTTGTTCAATGAGGCTATGACCCCTGG
TTCTGACGGCATGGTTTCCAAGACTGATCTGATGACCATTATGGCGGAGG
ACTTGGTCTCCGCCAAGGAACTTGAGGCTCGTGGTGATAGCGCAATCGTT
GAATAA

Coding sequence (CDS) from alignment at tig00000883_pilon:283522..284727+

>Ggra9386.t1 ID=Ggra9386.t1|Name=Ggra9386.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000883_pilon:283522..284727+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCATTCCGACTGGTGCTACGCCGCTGCGTGGCAGTCGCTCTTC
ATCGGCGCGTTTGCTGTGTTCGCCGCGGCCTTCGCGCGCGTCGCGCAGCG
TGTCCACGCCGCGCATGACGGATACGGAGGCGCCGGAGTATGAGACGCCG
GTCACGCGACGTTTATCAGACGCGCTgaaggagaaggatgtggaggcgcg
caagacacgcgaagagaatgagaagaaggagagagcgaagatggagaagA
GGATGGCTCGCCAACGAAAGATTGACAAGTTGAATAGTATTCCGGATGAC
CTGGAGGTTGGTAGTGTCAATCAGCATATGTATGAAGCGGGCGTTCAGGA
GGAATTGGCGCTTTTGGATAAAGACCTGGTTGGTTTGAAGCCGGTCAAGA
CCAGGGTTGCCGAGATCGCTGCTCTGTTGATTGTTGACAAGTTGAGAAAG
GGGCTTGGTTTGGAAACTGCTGTGCCTTCGTTGCACATGTCTTTCACTGG
TGCGCCAGGTACTGGAAAGACTACGGTGGCCATGAGGATGGGTCAATTGT
TGAAGAGGATGGGATATTGTCGTCAGGGACATCTTGTGGTTGCTACTCGT
GATGACCTTGTTGGACAATATGTCGGTCACACTGCACCCAAGACAAAAGA
AGTTATTAAGAAGGCATTCGGAGGAGTGTTGCTCATTGACGAGGCCTACT
ATCTGTACAATGCCTCCAATGATAAGGATTATGGACAAGAGTCTATTGAG
ATTCTTCTGCAGGTCATGGAGCATCAGCGCGATGACTTGGTTGTTGTCTT
GGCTGGTTATGAAGACCGTATGGATAGGTTCTACGGCTTCAACCCTGGTA
TGAGCTCTCGTATTGGAAACCATATCAACTTCCCTAACTACTCGGCCGAA
GAGCTGGTTGCCATTGCGAAGGTCATGAGTCGTGAGCTGCAGTACGTGTT
TGCAGAGGGCTCTGAGACCGTGTTCAAGGAGTATGTTGAGAAGCGTATGC
AGATGCCGTACTTCTCCAACGCCAGAACTGTGCGTAACGCTGTGGATCGC
GCCAGGATGAGAGCTTCCATCCGTTTGTTCAATGAGGCTATGACCCCTGG
TTCTGACGGCATGGTTTCCAAGACTGATCTGATGACCATTATGGCGGAGG
ACTTGGTCTCCGCCAAGGAACTTGAGGCTCGTGGTGATAGCGCAATCGTT
GAATAA