Ggra9375.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9375.t1
Unique NameGgra9375.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length640
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:124345..127051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FP63
PFAMsEF-hand_5,HD_4,RelA_SpoT,TPR_16,TPR_19,TPR_8
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K20310
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Evalue1.84e-14
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
EC2.7.6.5
Descriptioncellular component assembly
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9375Ggra9375Gracilaria gracilis GNS1m malegenetig00000883_pilon 124345..127051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1Ggra9375.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 124345..127051 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1.start1Ggra9375.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 124345..124347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1.CDS1Ggra9375.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 124345..124764 +
Ggra9375.t1.CDS2Ggra9375.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 125552..127051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1.exon1Ggra9375.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 124345..124764 +
Ggra9375.t1.exon2Ggra9375.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 125552..127051 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1.intron1Ggra9375.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 124765..125551 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9375.t1.stop1Ggra9375.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 127049..127051 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=640bp
MHAAVATFASRVGAPRHVQPAGFRDFRGWLLRLSSAQAQHAWDELFGAVA
LAGGGDARAIQLHKVQMVRSIVRLVVKPRADESSKLVSTNAGRQAGKPRG
SGSTLMSVLDEQLRRWQRAHGASWAGSASAAAAAASAAASRMTDKVHAHL
LEEEQKPLGGGGGAGGGGGAGGGGGDGGGRACAQPLQPLPLQLDLLNYRA
RRQMWRAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFR
AGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVAL
SLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLESDARNVSTARA
LFERAAAANARNAATFVAWGVFEAAQGELPRAERAFQRAQQVSPRNVRAY
VAHAAALERAGFRNRARTALLRALRRRPHAPAPRQMMALLEFRDGRAEQA
RELFRSALHADRAHAPSWHAWACVERLCGDAPRARTLFQHAVWAAPHSPH
AVRSWHAWASLELELGQYDAARRYFAHALLIDAHSVPILTGLARLEARCG
HMHRARELLETSVRLQPALGSTWKLYEDLELAHGSLRRARLVYRRCELYM
KQLDQRVVVSDPLPGDFRAGGMWIDALQLDCADSAFHSF*
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spliced messenger RNA

>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00000883_pilon:124345..127051+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCGGCGGTGGCCACGTTCGCGTCGCGCGTAGGCGCGCCGCGCCA
CGTACAGCCGGCGGGCTTTCGGGACTTTCGGGGCTGGCTGCTGCGGCTGA
GCTCCGCGCAGGCGCAGCACGCATGGGACGAGCTGTTTGGCGCGGTGGCG
CTGGCCGGCGGCGGCGACGCGCGCGCCATCCAGCTGCACAAGGTGCAGAT
GGTGCGCTCCATCGTGCGGCTGGTGGTGAAGCCGCGCGCGGACGAGAGCT
CCAAGCTGGTGAGCACCAACGCCGGGCGGCAGGCCGGCAAGCCGCGCGGC
TCCGGCTCCACGCTCATGTCAGTTTTGGACGAGCAGCTGCGGCGGTGGCA
GCGCGCTCACGGCGCGTCGTGGGCGGGGTcggcgtcggcggcggcggcgg
cggcgtcggcggcggcgTCGCGCATGACGGACAAGGTGCACGCGCACCTG
CTAGAGGAGGAGCAAAAGCCGCTGggtggtggtggtggtgctggtggtgg
tggtggtgctggtggtggtggtggtgatggtggtggAAGGGCGTGTGCGC
AGCCGCTGCAGCCGCTACCACTGCAGCTGGACCTGCTCAACTACCGCGCG
CGTCGGCAGATGTGGCGCGCGCCGCAGCGTGCCGAAGCGCTGTTCCAGCG
CGCGGTGGCCATCAACGCGGCGGACGGGCGCGCGTGGCTCGGGCTGGCGC
GTCTACGCGTGGCGGCGCGTAAACACGACGCGGCGCGCGCCACCTTCCGC
GCCGGCGTGCGCGCGTCGCCGCGCAACGCGCACCTGCTGCAGGCGTGGGG
CGTGTTTGAGCAGCGGCAGCGCTCAATGGCGCGCGCACACGCGCTGTTAC
GCGCGGCGGTGCGCGTGCAGCCCACGCACGCGCCGGCGTGGGTGGCGCTG
TCGCTGTGGTACCAACGGGTGGCGCGCGACGTGCACCGCGCGCGAGGCTG
CGTGCGACGCGCCACAAAGGTGGCGCCCGAGAGCTACTACGCGTGGACGG
TGTGGGCGCAGCTGGAGAGCGACGCGCGCAACGTGAGCACAGCGCGCGCG
CTGTTCGAACGCGCGGCGGCGGCCAACGCGCGCAACGCCGCCACCTTTGT
GGCGTGGGGCGTGTTCGAGGCGGCGCAAGGCGAGCTCCCGCGCGCCGAAC
GCGCGTTCCAACGCGCGCAGCAAGTGTCGCCGCGAAACGTGCGCGCGTAC
GTGGCGCACGCGGCGGCGCTGGAGCGCGCGGGCTTCCGCAACcgcgctcg
caccgcgctgctgcgcgcgctgcggcgacggccgcacgcgccggcgccgc
gGCAGATGATGGCGCTGCTGGAGTTTCGCGACGGGCGCGCCGAGCAGGCG
CGCGAGCTGTTCCGCTCCGCGCTGCACGCCGACCGCGCGCACGCGCCGTC
GTGGCACGCGTGGGCGTGCGTGGAGCGGCTGTGCGGCGACGCGCCGCGCG
CGCGCACGCTGTTTCAACACGCCGTGTGGGCGGCGCCGCACTCGCCGCAC
GCCGTGCGCTCGTGGCACGCGTGGGCGTCGCTCGAGCTGGAGCTTGGGCA
GTATGACGCGGCGCGGCGCTACTTTGCGCACGCGCTGCTCATCGACGCGC
ACAGCGTGCCCATCCTCACCGGGCTGGCGCGGCTGGAGGCGCGCTGCGGC
CACATGCACCGCGCCAGGGAGCTGTTGGAGACGAGCGTGCGCCTGCAGCC
GGCGCTGGGCTCCACGTGGAAGCTGTACGAGGACCTGGAGCTGGCGCACG
GCTCGCTGCGACGCGCGCGGCTTGTTTACCGACGCTGTGAGCTGTACATG
AAGCAGCTGGACCAGCGCGTGGTTGTGTCCGACCCGCTGCCCGGCGACTT
TCGCGCCGGCGGTATGTGGATCGACGCGCTGCAGCTCGATTGCGCCGACA
GTGCGTTTCACAGCTTTTGA
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protein sequence of Ggra9375.t1

>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=640bp
MHAAVATFASRVGAPRHVQPAGFRDFRGWLLRLSSAQAQHAWDELFGAVA
LAGGGDARAIQLHKVQMVRSIVRLVVKPRADESSKLVSTNAGRQAGKPRG
SGSTLMSVLDEQLRRWQRAHGASWAGSASAAAAAASAAASRMTDKVHAHL
LEEEQKPLGGGGGAGGGGGAGGGGGDGGGRACAQPLQPLPLQLDLLNYRA
RRQMWRAPQRAEALFQRAVAINAADGRAWLGLARLRVAARKHDAARATFR
AGVRASPRNAHLLQAWGVFEQRQRSMARAHALLRAAVRVQPTHAPAWVAL
SLWYQRVARDVHRARGCVRRATKVAPESYYAWTVWAQLESDARNVSTARA
LFERAAAANARNAATFVAWGVFEAAQGELPRAERAFQRAQQVSPRNVRAY
VAHAAALERAGFRNRARTALLRALRRRPHAPAPRQMMALLEFRDGRAEQA
RELFRSALHADRAHAPSWHAWACVERLCGDAPRARTLFQHAVWAAPHSPH
AVRSWHAWASLELELGQYDAARRYFAHALLIDAHSVPILTGLARLEARCG
HMHRARELLETSVRLQPALGSTWKLYEDLELAHGSLRRARLVYRRCELYM
KQLDQRVVVSDPLPGDFRAGGMWIDALQLDCADSAFHSF*
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mRNA from alignment at tig00000883_pilon:124345..127051+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2707bp|location=Sequence derived from alignment at tig00000883_pilon:124345..127051+ (Gracilaria gracilis GNS1m male)
ATGCACGCGGCGGTGGCCACGTTCGCGTCGCGCGTAGGCGCGCCGCGCCA
CGTACAGCCGGCGGGCTTTCGGGACTTTCGGGGCTGGCTGCTGCGGCTGA
GCTCCGCGCAGGCGCAGCACGCATGGGACGAGCTGTTTGGCGCGGTGGCG
CTGGCCGGCGGCGGCGACGCGCGCGCCATCCAGCTGCACAAGGTGCAGAT
GGTGCGCTCCATCGTGCGGCTGGTGGTGAAGCCGCGCGCGGACGAGAGCT
CCAAGCTGGTGAGCACCAACGCCGGGCGGCAGGCCGGCAAGCCGCGCGGC
TCCGGCTCCACGCTCATGTCAGTTTTGGACGAGCAGCTGCGGCGGTGGCA
GCGCGCTCACGGCGCGTCGTGGGCGGGGTcggcgtcggcggcggcggcgg
cggcgtcggcggcggcgTCGGTGAGTtcgccgtcgtcggggtcgtttgtg
ccgtggtcggcgtcgtcgagcgcgacgcggtcgccgtcgcggtcACGTGG
AagcggcagcggcagcggcagcggcaTGGCGGCGCCATTGAACCGGTCGT
TCTCGTCGATTGGAAAgcgcgggcgcggggggtcgggcagcgggggcgag
cgGCTGCCGTCGCTACAGCAGCTGCTGCACGGGACGTCGGCGTCACAGGC
GCCGCTGCCGTCGTTCCAGGAGCTGGACGACTCGATAgcgcggcgcggcg
cggcgcccaaggcgcggcgGCGCTAGTGACAGCTGTTAGATGTGGTAGAA
GCGAACAGGCTGGCTGTAAGCACATGATATTAATGCATTAATTATTCCAC
GCTCGGCGAGCATCACAGCGAGGCGTCGGCGCCTGTGAGTGCAGCCGCAC
GTGTGCGCGTATCGGCTGCAGCATGGCGCATCACACGCATGCACCAACCG
GCGCGTGCCAAGTGGACGGCGTCGCAGCCGCGTGTGCGCCTTTGCACTCA
CACACATAAGCTCGCAGGTTGCTCTCAGCTCGCAAGTTGCTCAGTTGGCC
GCGCTCCGCGCCCGCGACGCGCCCGTGCTCACCTTCCCCAACCCCATGCG
CGCGCCCTTGTTCGTGgctgccgccgcgccgctgccgctgctgctggcgc
gcgcccgcgctgcgtgctcgccgcacgcctgcgccacgcgcccgccgccg
ccgccgccgcGTGaacagcaacagcaacagcaacagcaacCTTCATGCGA
CGCGCAGCGCATGACGGACAAGGTGCACGCGCACCTGCTAGAGGAGGAGC
AAAAGCCGCTGggtggtggtggtggtgctggtggtggtggtggtgctggt
ggtggtggtggtgatggtggtggAAGGGCGTGTGCGCAGCCGCTGCAGCC
GCTACCACTGCAGCTGGACCTGCTCAACTACCGCGCGCGTCGGCAGATGT
GGCGCGCGCCGCAGCGTGCCGAAGCGCTGTTCCAGCGCGCGGTGGCCATC
AACGCGGCGGACGGGCGCGCGTGGCTCGGGCTGGCGCGTCTACGCGTGGC
GGCGCGTAAACACGACGCGGCGCGCGCCACCTTCCGCGCCGGCGTGCGCG
CGTCGCCGCGCAACGCGCACCTGCTGCAGGCGTGGGGCGTGTTTGAGCAG
CGGCAGCGCTCAATGGCGCGCGCACACGCGCTGTTACGCGCGGCGGTGCG
CGTGCAGCCCACGCACGCGCCGGCGTGGGTGGCGCTGTCGCTGTGGTACC
AACGGGTGGCGCGCGACGTGCACCGCGCGCGAGGCTGCGTGCGACGCGCC
ACAAAGGTGGCGCCCGAGAGCTACTACGCGTGGACGGTGTGGGCGCAGCT
GGAGAGCGACGCGCGCAACGTGAGCACAGCGCGCGCGCTGTTCGAACGCG
CGGCGGCGGCCAACGCGCGCAACGCCGCCACCTTTGTGGCGTGGGGCGTG
TTCGAGGCGGCGCAAGGCGAGCTCCCGCGCGCCGAACGCGCGTTCCAACG
CGCGCAGCAAGTGTCGCCGCGAAACGTGCGCGCGTACGTGGCGCACGCGG
CGGCGCTGGAGCGCGCGGGCTTCCGCAACcgcgctcgcaccgcgctgctg
cgcgcgctgcggcgacggccgcacgcgccggcgccgcgGCAGATGATGGC
GCTGCTGGAGTTTCGCGACGGGCGCGCCGAGCAGGCGCGCGAGCTGTTCC
GCTCCGCGCTGCACGCCGACCGCGCGCACGCGCCGTCGTGGCACGCGTGG
GCGTGCGTGGAGCGGCTGTGCGGCGACGCGCCGCGCGCGCGCACGCTGTT
TCAACACGCCGTGTGGGCGGCGCCGCACTCGCCGCACGCCGTGCGCTCGT
GGCACGCGTGGGCGTCGCTCGAGCTGGAGCTTGGGCAGTATGACGCGGCG
CGGCGCTACTTTGCGCACGCGCTGCTCATCGACGCGCACAGCGTGCCCAT
CCTCACCGGGCTGGCGCGGCTGGAGGCGCGCTGCGGCCACATGCACCGCG
CCAGGGAGCTGTTGGAGACGAGCGTGCGCCTGCAGCCGGCGCTGGGCTCC
ACGTGGAAGCTGTACGAGGACCTGGAGCTGGCGCACGGCTCGCTGCGACG
CGCGCGGCTTGTTTACCGACGCTGTGAGCTGTACATGAAGCAGCTGGACC
AGCGCGTGGTTGTGTCCGACCCGCTGCCCGGCGACTTTCGCGCCGGCGGT
ATGTGGATCGACGCGCTGCAGCTCGATTGCGCCGACAGTGCGTTTCACAG
CTTTTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:124345..127051+

>Ggra9375.t1 ID=Ggra9375.t1|Name=Ggra9375.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00000883_pilon:124345..127051+ (Gracilaria gracilis GNS1m male)
ATGCACGCGGCGGTGGCCACGTTCGCGTCGCGCGTAGGCGCGCCGCGCCA
CGTACAGCCGGCGGGCTTTCGGGACTTTCGGGGCTGGCTGCTGCGGCTGA
GCTCCGCGCAGGCGCAGCACGCATGGGACGAGCTGTTTGGCGCGGTGGCG
CTGGCCGGCGGCGGCGACGCGCGCGCCATCCAGCTGCACAAGGTGCAGAT
GGTGCGCTCCATCGTGCGGCTGGTGGTGAAGCCGCGCGCGGACGAGAGCT
CCAAGCTGGTGAGCACCAACGCCGGGCGGCAGGCCGGCAAGCCGCGCGGC
TCCGGCTCCACGCTCATGTCAGTTTTGGACGAGCAGCTGCGGCGGTGGCA
GCGCGCTCACGGCGCGTCGTGGGCGGGGTcggcgtcggcggcggcggcgg
cggcgtcggcggcggcgTCGCGCATGACGGACAAGGTGCACGCGCACCTG
CTAGAGGAGGAGCAAAAGCCGCTGggtggtggtggtggtgctggtggtgg
tggtggtgctggtggtggtggtggtgatggtggtggAAGGGCGTGTGCGC
AGCCGCTGCAGCCGCTACCACTGCAGCTGGACCTGCTCAACTACCGCGCG
CGTCGGCAGATGTGGCGCGCGCCGCAGCGTGCCGAAGCGCTGTTCCAGCG
CGCGGTGGCCATCAACGCGGCGGACGGGCGCGCGTGGCTCGGGCTGGCGC
GTCTACGCGTGGCGGCGCGTAAACACGACGCGGCGCGCGCCACCTTCCGC
GCCGGCGTGCGCGCGTCGCCGCGCAACGCGCACCTGCTGCAGGCGTGGGG
CGTGTTTGAGCAGCGGCAGCGCTCAATGGCGCGCGCACACGCGCTGTTAC
GCGCGGCGGTGCGCGTGCAGCCCACGCACGCGCCGGCGTGGGTGGCGCTG
TCGCTGTGGTACCAACGGGTGGCGCGCGACGTGCACCGCGCGCGAGGCTG
CGTGCGACGCGCCACAAAGGTGGCGCCCGAGAGCTACTACGCGTGGACGG
TGTGGGCGCAGCTGGAGAGCGACGCGCGCAACGTGAGCACAGCGCGCGCG
CTGTTCGAACGCGCGGCGGCGGCCAACGCGCGCAACGCCGCCACCTTTGT
GGCGTGGGGCGTGTTCGAGGCGGCGCAAGGCGAGCTCCCGCGCGCCGAAC
GCGCGTTCCAACGCGCGCAGCAAGTGTCGCCGCGAAACGTGCGCGCGTAC
GTGGCGCACGCGGCGGCGCTGGAGCGCGCGGGCTTCCGCAACcgcgctcg
caccgcgctgctgcgcgcgctgcggcgacggccgcacgcgccggcgccgc
gGCAGATGATGGCGCTGCTGGAGTTTCGCGACGGGCGCGCCGAGCAGGCG
CGCGAGCTGTTCCGCTCCGCGCTGCACGCCGACCGCGCGCACGCGCCGTC
GTGGCACGCGTGGGCGTGCGTGGAGCGGCTGTGCGGCGACGCGCCGCGCG
CGCGCACGCTGTTTCAACACGCCGTGTGGGCGGCGCCGCACTCGCCGCAC
GCCGTGCGCTCGTGGCACGCGTGGGCGTCGCTCGAGCTGGAGCTTGGGCA
GTATGACGCGGCGCGGCGCTACTTTGCGCACGCGCTGCTCATCGACGCGC
ACAGCGTGCCCATCCTCACCGGGCTGGCGCGGCTGGAGGCGCGCTGCGGC
CACATGCACCGCGCCAGGGAGCTGTTGGAGACGAGCGTGCGCCTGCAGCC
GGCGCTGGGCTCCACGTGGAAGCTGTACGAGGACCTGGAGCTGGCGCACG
GCTCGCTGCGACGCGCGCGGCTTGTTTACCGACGCTGTGAGCTGTACATG
AAGCAGCTGGACCAGCGCGTGGTTGTGTCCGACCCGCTGCCCGGCGACTT
TCGCGCCGGCGGTATGTGGATCGACGCGCTGCAGCTCGATTGCGCCGACA
GTGCGTTTCACAGCTTTTGA
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