Ggra9374.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9374.t1
Unique NameGgra9374.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:119527..120291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706111.1
Preferred namePSMB4
PFAMsProteasome
Max annot lvl2759|Eukaryota
KEGG koko:K02736,ko:K05542,ko:K18740
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000226,GO:0000502,GO:0001530,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007098,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022402,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031023,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0036211,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080134,GO:0090068,GO:0097367,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Evalue1.23e-85
EggNOG OGsKOG0185@1|root,KOG0185@2759|Eukaryota
EC1.3.1.88,3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016,ko03019,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9374Ggra9374Gracilaria gracilis GNS1m malegenetig00000883_pilon 119527..120291 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9374.t1.stop1Ggra9374.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 119527..119529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9374.t1.CDS1Ggra9374.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 119527..120291 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9374.t1.exon1Ggra9374.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 119527..120291 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9374.t1.start1Ggra9374.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 120289..120291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9374.t1Ggra9374.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 119527..120291 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9374.t1 ID=Ggra9374.t1|Name=Ggra9374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MSGLRLTAAVPPRARDESVRASATGAPITHTSRPIVTGSSVIAIKCKDGV
VIATDTLASYGSLARFRQISRLFQATDSCVIGGGGDMSDFHEICDMVRKE
TTMEYCHDDGHMISASAVHQMLARIMYNRRNKMDPLWNYLVVAGWQDGKP
LLGYVDLVGSHFQSDVIATGYGEYLGLPLLRKAHRDDITVEEGKKVLLDI
LKVLFYRDARTIDRVQIACVTEKGAVVEQPVKLETEWSFKAFVSGARKTD
VSTW*
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spliced messenger RNA

>Ggra9374.t1 ID=Ggra9374.t1|Name=Ggra9374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000883_pilon:119527..120291- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGGCTCCGATTAACGGCGGCCGTTCCGCCGCGCGCCAGGGATGA
GTCTGTCAGAGCGTCGGCTACGGGCGCCCCCATCACGCACACCTCGCGCC
CCATTGTCACTGGATCCTCTGTGATCGCCATCAAATGTAAAGACGGCGTC
GTGATCGCCACCGATACCCTGGCTTCTTATGGATCTCTTGCGCGATTCAG
ACAGATTTCGCGACTGTTTCAGGCCACCGACTCGTGCGTCATTGGCGGCG
GCGGTGACATGTCCGACTTTCACGAGATTTGCGATATGGTTCGAAAGGAG
ACTACCATGGAGTATTGCCATGATGATGGCCATATGATTAGCGCCAGCGC
CGTTCATCAGATGCTTGCTAGAATTATGTATAATCGACGAAATAAGATGG
ATCCGCTTTGGAACTATCTCGTTGTTGCCGGATGGCAAGACGGAAAACCT
TTGTTGGGATACGTCGATCTTGTTGGAAGTCACTTCCAGAGTGATGTTAT
TGCTACAGGCTATGGTGAATATCTTGGTTTACCTTTGCTTCGAAAAGCCC
ATCGCGACGATATAACTGTGGAGGAGGGTAAGAAAGTGCTGCTTGATATT
CTCAAGGTTTTGTTTTATCGCGATGCTAGGACTATTGATCGTGTGCAGAT
CGCCTGCGTTACGGAGAAGGGCGCTGTTGTTGAGCAGCCTGTTAAGCTTG
AAACCGAATGGAGCTTCAAGGCGTTCGTTAGCGGTGCAAGGAAAACAGAT
GTTTCAACATGGTAA
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protein sequence of Ggra9374.t1

>Ggra9374.t1 ID=Ggra9374.t1|Name=Ggra9374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MSGLRLTAAVPPRARDESVRASATGAPITHTSRPIVTGSSVIAIKCKDGV
VIATDTLASYGSLARFRQISRLFQATDSCVIGGGGDMSDFHEICDMVRKE
TTMEYCHDDGHMISASAVHQMLARIMYNRRNKMDPLWNYLVVAGWQDGKP
LLGYVDLVGSHFQSDVIATGYGEYLGLPLLRKAHRDDITVEEGKKVLLDI
LKVLFYRDARTIDRVQIACVTEKGAVVEQPVKLETEWSFKAFVSGARKTD
VSTW*
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mRNA from alignment at tig00000883_pilon:119527..120291-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9374.t1 ID=Ggra9374.t1|Name=Ggra9374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000883_pilon:119527..120291- (Gracilaria gracilis GNS1m male)
ATGTCTGGGCTCCGATTAACGGCGGCCGTTCCGCCGCGCGCCAGGGATGA
GTCTGTCAGAGCGTCGGCTACGGGCGCCCCCATCACGCACACCTCGCGCC
CCATTGTCACTGGATCCTCTGTGATCGCCATCAAATGTAAAGACGGCGTC
GTGATCGCCACCGATACCCTGGCTTCTTATGGATCTCTTGCGCGATTCAG
ACAGATTTCGCGACTGTTTCAGGCCACCGACTCGTGCGTCATTGGCGGCG
GCGGTGACATGTCCGACTTTCACGAGATTTGCGATATGGTTCGAAAGGAG
ACTACCATGGAGTATTGCCATGATGATGGCCATATGATTAGCGCCAGCGC
CGTTCATCAGATGCTTGCTAGAATTATGTATAATCGACGAAATAAGATGG
ATCCGCTTTGGAACTATCTCGTTGTTGCCGGATGGCAAGACGGAAAACCT
TTGTTGGGATACGTCGATCTTGTTGGAAGTCACTTCCAGAGTGATGTTAT
TGCTACAGGCTATGGTGAATATCTTGGTTTACCTTTGCTTCGAAAAGCCC
ATCGCGACGATATAACTGTGGAGGAGGGTAAGAAAGTGCTGCTTGATATT
CTCAAGGTTTTGTTTTATCGCGATGCTAGGACTATTGATCGTGTGCAGAT
CGCCTGCGTTACGGAGAAGGGCGCTGTTGTTGAGCAGCCTGTTAAGCTTG
AAACCGAATGGAGCTTCAAGGCGTTCGTTAGCGGTGCAAGGAAAACAGAT
GTTTCAACATGGTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:119527..120291-

>Ggra9374.t1 ID=Ggra9374.t1|Name=Ggra9374.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000883_pilon:119527..120291- (Gracilaria gracilis GNS1m male)
ATGTCTGGGCTCCGATTAACGGCGGCCGTTCCGCCGCGCGCCAGGGATGA
GTCTGTCAGAGCGTCGGCTACGGGCGCCCCCATCACGCACACCTCGCGCC
CCATTGTCACTGGATCCTCTGTGATCGCCATCAAATGTAAAGACGGCGTC
GTGATCGCCACCGATACCCTGGCTTCTTATGGATCTCTTGCGCGATTCAG
ACAGATTTCGCGACTGTTTCAGGCCACCGACTCGTGCGTCATTGGCGGCG
GCGGTGACATGTCCGACTTTCACGAGATTTGCGATATGGTTCGAAAGGAG
ACTACCATGGAGTATTGCCATGATGATGGCCATATGATTAGCGCCAGCGC
CGTTCATCAGATGCTTGCTAGAATTATGTATAATCGACGAAATAAGATGG
ATCCGCTTTGGAACTATCTCGTTGTTGCCGGATGGCAAGACGGAAAACCT
TTGTTGGGATACGTCGATCTTGTTGGAAGTCACTTCCAGAGTGATGTTAT
TGCTACAGGCTATGGTGAATATCTTGGTTTACCTTTGCTTCGAAAAGCCC
ATCGCGACGATATAACTGTGGAGGAGGGTAAGAAAGTGCTGCTTGATATT
CTCAAGGTTTTGTTTTATCGCGATGCTAGGACTATTGATCGTGTGCAGAT
CGCCTGCGTTACGGAGAAGGGCGCTGTTGTTGAGCAGCCTGTTAAGCTTG
AAACCGAATGGAGCTTCAAGGCGTTCGTTAGCGGTGCAAGGAAAACAGAT
GTTTCAACATGGTAA
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