Ggra9370.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9370.t1
Unique NameGgra9370.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:112427..113386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP02971
Max annot lvl3041|Chlorophyta
Evalue1.59e-05
EggNOG OGsCOG0624@1|root,KOG2275@2759|Eukaryota,37Q0X@33090|Viridiplantae,34N00@3041|Chlorophyta
Descriptionaminoacylase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9370Ggra9370Gracilaria gracilis GNS1m malegenetig00000883_pilon 112427..113386 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9370.t1.stop1Ggra9370.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 112427..112429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9370.t1.CDS1Ggra9370.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 112427..113386 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9370.t1.exon1Ggra9370.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 112427..113386 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9370.t1.start1Ggra9370.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 113384..113386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9370.t1Ggra9370.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 112427..113386 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9370.t1 ID=Ggra9370.t1|Name=Ggra9370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MTLLAFVPRLPTPVSTPTRSLPLPSKSASCIRPPARRTTVVASLAFDSTT
ITSFTEQIKGEWTGYEGNFCPHTGKAVPVPDYYIPEEFSQWGLTPLGFES
NHSITVRSDKLYRKFFRVLPSVSLFADHVDTEEDFRCDTIGDGLTVYSDG
SFVNGNKKLPTKKSKLERPPRIEFRLPHPYQQKQAANLTLHVDFESATIV
QDIRAIVEKWSCIYCDGADMEGSSGYIEGWVAGAPGNAQDLTGRWLRGDK
LFEREQASQREGGYVFLPEGLDVAFEERADGGRIARAAWRVSDRRVALQR
IFDTEGNVVSTERFVEQRQ*
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spliced messenger RNA

>Ggra9370.t1 ID=Ggra9370.t1|Name=Ggra9370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000883_pilon:112427..113386- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTTCTCGCCTTCGTGCCACGTTTGCCGACGCCGGTTTCAACGCC
CACTCGCTCGTTACCGCTTCCCAGCAAGTCCGCCTCGTGCATACGCCCGC
CCGCGCGTCGCACCACTGTCGTGGCGTCTCTAGCTTTCGATAGCACCACC
ATCACGTCCTTCACCGAGCAAATCAAGGGCGAGTGGACAGGCTACGAGGG
CAACTTCTGCCCGCACACCGGCAAGGCAGTCCCAGTGCCCGATTACTACA
TCCCCGAGGAATTTTCGCAGTGGGGGTTGACGCCGCTTGGTTTTGAGAGC
AACCATTCCATCACCGTCAGGAGCGACAAGTTGTACAGAAAGTTCTTCCG
TGTGTTGCCGTCCGTGTCACTGTTTGCAGATCATGTGGATACAGAGGAGG
ACTTCAGGTGTGATACGATTGGAGATGGGCTTACTGTTTATTCCGATGGC
AGTTTTGTCAATGGTAACAAAAAGTTGCCCACAAAGAAGAGCAAGTTAGA
GCGACCGCCGCGTATCGAATTTCGTTTACCGCACCCTTATCAACAGAAAC
AGGCCGCCAACCTCACGCTGCACGTCGACTTTGAATCAGCCACAATTGTA
CAGGACATTCGAGCCATCGTCGAGAAGTGGTCCTGTATTTACTGTGACGG
CGCGGATATGGAAGGTTCGTCCGGTTATATTGAGGGTTGGGTCGCAGGCG
CTCCAGGAAACGCCCAAGATTTGACGGGCAGATGGCTCAGAGGTGATAAG
CTGTTCGAAAGAGAACAAGCTAGTCAACGTGAAGGTGGCTATGTATTTTT
GCCCGAAGGACTTGATGTGGCGTTTGAAGAGCGTGCCGATGGAGGTCGAA
TCGCTAGGGCTGCCTGGCGCGTCAGTGACCGACGTGTGGCGCTTCAACGT
ATCTTTGATACTGAGGGGAATGTTGTGAGTACCGAGAGGTTTGTTGAACA
ACGTCAGTAA
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protein sequence of Ggra9370.t1

>Ggra9370.t1 ID=Ggra9370.t1|Name=Ggra9370.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MTLLAFVPRLPTPVSTPTRSLPLPSKSASCIRPPARRTTVVASLAFDSTT
ITSFTEQIKGEWTGYEGNFCPHTGKAVPVPDYYIPEEFSQWGLTPLGFES
NHSITVRSDKLYRKFFRVLPSVSLFADHVDTEEDFRCDTIGDGLTVYSDG
SFVNGNKKLPTKKSKLERPPRIEFRLPHPYQQKQAANLTLHVDFESATIV
QDIRAIVEKWSCIYCDGADMEGSSGYIEGWVAGAPGNAQDLTGRWLRGDK
LFEREQASQREGGYVFLPEGLDVAFEERADGGRIARAAWRVSDRRVALQR
IFDTEGNVVSTERFVEQRQ*
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mRNA from alignment at tig00000883_pilon:112427..113386-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9370.t1 ID=Ggra9370.t1|Name=Ggra9370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000883_pilon:112427..113386- (Gracilaria gracilis GNS1m male)
ATGACGCTTCTCGCCTTCGTGCCACGTTTGCCGACGCCGGTTTCAACGCC
CACTCGCTCGTTACCGCTTCCCAGCAAGTCCGCCTCGTGCATACGCCCGC
CCGCGCGTCGCACCACTGTCGTGGCGTCTCTAGCTTTCGATAGCACCACC
ATCACGTCCTTCACCGAGCAAATCAAGGGCGAGTGGACAGGCTACGAGGG
CAACTTCTGCCCGCACACCGGCAAGGCAGTCCCAGTGCCCGATTACTACA
TCCCCGAGGAATTTTCGCAGTGGGGGTTGACGCCGCTTGGTTTTGAGAGC
AACCATTCCATCACCGTCAGGAGCGACAAGTTGTACAGAAAGTTCTTCCG
TGTGTTGCCGTCCGTGTCACTGTTTGCAGATCATGTGGATACAGAGGAGG
ACTTCAGGTGTGATACGATTGGAGATGGGCTTACTGTTTATTCCGATGGC
AGTTTTGTCAATGGTAACAAAAAGTTGCCCACAAAGAAGAGCAAGTTAGA
GCGACCGCCGCGTATCGAATTTCGTTTACCGCACCCTTATCAACAGAAAC
AGGCCGCCAACCTCACGCTGCACGTCGACTTTGAATCAGCCACAATTGTA
CAGGACATTCGAGCCATCGTCGAGAAGTGGTCCTGTATTTACTGTGACGG
CGCGGATATGGAAGGTTCGTCCGGTTATATTGAGGGTTGGGTCGCAGGCG
CTCCAGGAAACGCCCAAGATTTGACGGGCAGATGGCTCAGAGGTGATAAG
CTGTTCGAAAGAGAACAAGCTAGTCAACGTGAAGGTGGCTATGTATTTTT
GCCCGAAGGACTTGATGTGGCGTTTGAAGAGCGTGCCGATGGAGGTCGAA
TCGCTAGGGCTGCCTGGCGCGTCAGTGACCGACGTGTGGCGCTTCAACGT
ATCTTTGATACTGAGGGGAATGTTGTGAGTACCGAGAGGTTTGTTGAACA
ACGTCAGTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:112427..113386-

>Ggra9370.t1 ID=Ggra9370.t1|Name=Ggra9370.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000883_pilon:112427..113386- (Gracilaria gracilis GNS1m male)
ATGACGCTTCTCGCCTTCGTGCCACGTTTGCCGACGCCGGTTTCAACGCC
CACTCGCTCGTTACCGCTTCCCAGCAAGTCCGCCTCGTGCATACGCCCGC
CCGCGCGTCGCACCACTGTCGTGGCGTCTCTAGCTTTCGATAGCACCACC
ATCACGTCCTTCACCGAGCAAATCAAGGGCGAGTGGACAGGCTACGAGGG
CAACTTCTGCCCGCACACCGGCAAGGCAGTCCCAGTGCCCGATTACTACA
TCCCCGAGGAATTTTCGCAGTGGGGGTTGACGCCGCTTGGTTTTGAGAGC
AACCATTCCATCACCGTCAGGAGCGACAAGTTGTACAGAAAGTTCTTCCG
TGTGTTGCCGTCCGTGTCACTGTTTGCAGATCATGTGGATACAGAGGAGG
ACTTCAGGTGTGATACGATTGGAGATGGGCTTACTGTTTATTCCGATGGC
AGTTTTGTCAATGGTAACAAAAAGTTGCCCACAAAGAAGAGCAAGTTAGA
GCGACCGCCGCGTATCGAATTTCGTTTACCGCACCCTTATCAACAGAAAC
AGGCCGCCAACCTCACGCTGCACGTCGACTTTGAATCAGCCACAATTGTA
CAGGACATTCGAGCCATCGTCGAGAAGTGGTCCTGTATTTACTGTGACGG
CGCGGATATGGAAGGTTCGTCCGGTTATATTGAGGGTTGGGTCGCAGGCG
CTCCAGGAAACGCCCAAGATTTGACGGGCAGATGGCTCAGAGGTGATAAG
CTGTTCGAAAGAGAACAAGCTAGTCAACGTGAAGGTGGCTATGTATTTTT
GCCCGAAGGACTTGATGTGGCGTTTGAAGAGCGTGCCGATGGAGGTCGAA
TCGCTAGGGCTGCCTGGCGCGTCAGTGACCGACGTGTGGCGCTTCAACGT
ATCTTTGATACTGAGGGGAATGTTGTGAGTACCGAGAGGTTTGTTGAACA
ACGTCAGTAA
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