Ggra9361.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9361.t1
Unique Name	Ggra9361.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:91645..93312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010683772.1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15200
Evalue	1.83e-07
EggNOG OGs	COG0122@1\|root,KOG1918@2759\|Eukaryota,37PHK@33090\|Viridiplantae,3GABB@35493\|Streptophyta
Description	WD40 repeats
COG category	L
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9361	Ggra9361	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 91645..93312 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9361.t1.start1	Ggra9361.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 91645..91647 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9361.t1.CDS1	Ggra9361.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 91645..93312 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9361.t1.exon1	Ggra9361.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 91645..93312 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9361.t1.stop1	Ggra9361.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 93310..93312 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9361.t1	Ggra9361.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 91645..93312 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:91645..93312+
coding sequence from alignment at tig00000883_pilon:91645..93312+

mRNA sequence

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MDSEKTTECSELSKFSPPIALDSSQVSGWKSPNRLSLFKSRTLPDNGGVA
FAGGRISVLKWHPQVEGILATAAHRSDQPVHEVLESYTGTGHIQIWCIGK
GKAVCLGVVPHNGDCTWDLKWRPTIGDPESGNGWNGTFAAALGDGTILIC
CFKGISRHSNGCNTESRRIPVLPCSQTILRANTDGSLQRPVRVVQWSLDG
KRLLVGCVTGSLEVYESSPSESVWPKWSVPAQESIVTDIRWVNRYLFCCL
GTSCALRLRDIRDPIATIEQNAEGLAGSLSMCMAEPNVAVVGGDTGHLRV
VRLCGTDNFKAKDPVRRVYVQGNSFRTMQSVSAPHNGLSRSLVFTGGCEG
ILHEIAFPRPLWLGYEQSSISKTKIGQLLRWRVHDSSPNKSDNHLTLLLT
IGTSGTSTIDSAPKSAQGNERQAVDETQNSVQRVQKSTTQQRTRKISGPS
GDDKPLFGTAYHQSVTITRVDVSIPDRRVAVGIDGGIITWLQLNHKLFES
SLVRTKPPSTKKGKRSSSKTMEVKTEDNTVPNELHGEADHEYNDGPLADE
NAPES*

spliced messenger RNA

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:91645..93312+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAGAAAAGACAACAGAATGCTCCGAACTATCCAAGTTTTCACC
ACCCATTGCTTTGGATAGTTCACAGGTTTCGGGCTGGAAGTCGCCTAACA
GGTTATCACTCTTTAAGAGTAGAACTCTTCCCGACAATGGTGGTGTAGCC
TTCGCAGGCGGACGCATTAGCGTTCTAAAGTGGCATCCACAAGTTGAAGG
GATTTTAGCTACAGCGGCACACAGATCCGACCAACCAGTGCATGAAGTTC
TTGAATCGTATACTGGGACCGGCCACATTCAAATATGGTGCATTGGAAAG
GGTAAAGCCGTTTGTCTGGGTGTCGTTCCGCATAATGGTGACTGTACCTG
GGATCTGAAGTGGAGACCCACGATTGGAGATCCAGAATCGGGGAACGGGT
GGAATGGAACATTTGCCGCAGCTCTTGGAGATGGAACTATCTTGATATGC
TGCTTCAAGGGCATTAGTCGTCACTCGAATGGTTGCAACACAGAGTCGCG
CCGAATTCCTGTTCTGCCTTGTTCACAAACCATCCTTCGGGCAAACACGG
ATGGTTCTCTGCAAAGACCTGTTCGTGTGGTGCAATGGTCCTTAGATGGC
AAACGTCTTCTCGTTGGCTGTGTCACTGGTTCTTTGGAAGTATATGAATC
ATCCCCTTCTGAATCAGTATGGCCAAAATGGAGTGTTCCAGCTCAAGAGT
CAATAGTGACGGATATAAGATGGGTGAATCGGTATCTATTTTGTTGTTTA
GGGACATCATGTGCTCTTCGACTGCGAGATATCCGTGATCCAATTGCTAC
AATTGAGCAGAATGCCGAAGGACTGGCGGGAAGCCTTAGTATGTGCATGG
CAGAACCTAACGTTGCAGTGGTCGGAGGAGATACAGGTCACCTCCGTGTA
GTGAGACTGTGTGGAACGGATAACTTCAAAGCTAAGGATCCAGTACGAAG
AGTATATGTACAGGGGAACTCGTTTAGAACGATGCAGTCTGTTAGTGCGC
CACACAATGGGCTTTCTCGAAGCCTTGTGTTCACTGGAGGTTGTGAGGGA
ATTCTGCACGAAATCGCCTTCCCTCGACCTTTATGGCTGGGATATGAACA
GAGCAGCATATCCAAGACGAAGATAGGACAACTTCTTAGATGGCGTGTTC
ACGACAGTTCGCCAAACAAAAGTGATAACCATTTGACTCTACTGCTCACC
ATTGGTACCAGCGGTACCTCGACTATTGATAGTGCCCCCAAAAGTGCACA
AGGCAACGAACGGCAGGCTGTCGATGAAACTCAGAACAGCGTACAACGAG
TGCAAAAGAGCACTACTCAGCAAAGAACACGGAAGATCAGTGGCCCAAGC
GGGGACGACAAGCCTCTATTTGGCACAGCTTATCATCAATCTGTAACAAT
AACCCGAGTTGACGTGAGCATTCCCGATAGAAGAGTTGCCGTTGGTATAG
ACGGAGGTATCATTACGTGGCTGCAATTGAATCATAAGCTGTTCGAGTCT
TCTCTCGTTCGCACGAAGCCGCCGTCAACGAAGAAGGGAAAAAGATCTTC
CAGCAAGACAATGGAAGTTAAAACTGAGGACAATACGGTCCCCAACGAAT
TACATGGGGAGGCTGATCATGAATACAATGATGGCCCTCTTGCAGACGAG
AACGCACCCGAAAGTTGA

protein sequence of Ggra9361.t1

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MDSEKTTECSELSKFSPPIALDSSQVSGWKSPNRLSLFKSRTLPDNGGVA
FAGGRISVLKWHPQVEGILATAAHRSDQPVHEVLESYTGTGHIQIWCIGK
GKAVCLGVVPHNGDCTWDLKWRPTIGDPESGNGWNGTFAAALGDGTILIC
CFKGISRHSNGCNTESRRIPVLPCSQTILRANTDGSLQRPVRVVQWSLDG
KRLLVGCVTGSLEVYESSPSESVWPKWSVPAQESIVTDIRWVNRYLFCCL
GTSCALRLRDIRDPIATIEQNAEGLAGSLSMCMAEPNVAVVGGDTGHLRV
VRLCGTDNFKAKDPVRRVYVQGNSFRTMQSVSAPHNGLSRSLVFTGGCEG
ILHEIAFPRPLWLGYEQSSISKTKIGQLLRWRVHDSSPNKSDNHLTLLLT
IGTSGTSTIDSAPKSAQGNERQAVDETQNSVQRVQKSTTQQRTRKISGPS
GDDKPLFGTAYHQSVTITRVDVSIPDRRVAVGIDGGIITWLQLNHKLFES
SLVRTKPPSTKKGKRSSSKTMEVKTEDNTVPNELHGEADHEYNDGPLADE
NAPES*

mRNA from alignment at tig00000883_pilon:91645..93312+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:91645..93312+ (Gracilaria gracilis GNS1m male)
ATGGACTCAGAAAAGACAACAGAATGCTCCGAACTATCCAAGTTTTCACC
ACCCATTGCTTTGGATAGTTCACAGGTTTCGGGCTGGAAGTCGCCTAACA
GGTTATCACTCTTTAAGAGTAGAACTCTTCCCGACAATGGTGGTGTAGCC
TTCGCAGGCGGACGCATTAGCGTTCTAAAGTGGCATCCACAAGTTGAAGG
GATTTTAGCTACAGCGGCACACAGATCCGACCAACCAGTGCATGAAGTTC
TTGAATCGTATACTGGGACCGGCCACATTCAAATATGGTGCATTGGAAAG
GGTAAAGCCGTTTGTCTGGGTGTCGTTCCGCATAATGGTGACTGTACCTG
GGATCTGAAGTGGAGACCCACGATTGGAGATCCAGAATCGGGGAACGGGT
GGAATGGAACATTTGCCGCAGCTCTTGGAGATGGAACTATCTTGATATGC
TGCTTCAAGGGCATTAGTCGTCACTCGAATGGTTGCAACACAGAGTCGCG
CCGAATTCCTGTTCTGCCTTGTTCACAAACCATCCTTCGGGCAAACACGG
ATGGTTCTCTGCAAAGACCTGTTCGTGTGGTGCAATGGTCCTTAGATGGC
AAACGTCTTCTCGTTGGCTGTGTCACTGGTTCTTTGGAAGTATATGAATC
ATCCCCTTCTGAATCAGTATGGCCAAAATGGAGTGTTCCAGCTCAAGAGT
CAATAGTGACGGATATAAGATGGGTGAATCGGTATCTATTTTGTTGTTTA
GGGACATCATGTGCTCTTCGACTGCGAGATATCCGTGATCCAATTGCTAC
AATTGAGCAGAATGCCGAAGGACTGGCGGGAAGCCTTAGTATGTGCATGG
CAGAACCTAACGTTGCAGTGGTCGGAGGAGATACAGGTCACCTCCGTGTA
GTGAGACTGTGTGGAACGGATAACTTCAAAGCTAAGGATCCAGTACGAAG
AGTATATGTACAGGGGAACTCGTTTAGAACGATGCAGTCTGTTAGTGCGC
CACACAATGGGCTTTCTCGAAGCCTTGTGTTCACTGGAGGTTGTGAGGGA
ATTCTGCACGAAATCGCCTTCCCTCGACCTTTATGGCTGGGATATGAACA
GAGCAGCATATCCAAGACGAAGATAGGACAACTTCTTAGATGGCGTGTTC
ACGACAGTTCGCCAAACAAAAGTGATAACCATTTGACTCTACTGCTCACC
ATTGGTACCAGCGGTACCTCGACTATTGATAGTGCCCCCAAAAGTGCACA
AGGCAACGAACGGCAGGCTGTCGATGAAACTCAGAACAGCGTACAACGAG
TGCAAAAGAGCACTACTCAGCAAAGAACACGGAAGATCAGTGGCCCAAGC
GGGGACGACAAGCCTCTATTTGGCACAGCTTATCATCAATCTGTAACAAT
AACCCGAGTTGACGTGAGCATTCCCGATAGAAGAGTTGCCGTTGGTATAG
ACGGAGGTATCATTACGTGGCTGCAATTGAATCATAAGCTGTTCGAGTCT
TCTCTCGTTCGCACGAAGCCGCCGTCAACGAAGAAGGGAAAAAGATCTTC
CAGCAAGACAATGGAAGTTAAAACTGAGGACAATACGGTCCCCAACGAAT
TACATGGGGAGGCTGATCATGAATACAATGATGGCCCTCTTGCAGACGAG
AACGCACCCGAAAGTTGA

Coding sequence (CDS) from alignment at tig00000883_pilon:91645..93312+

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000883_pilon:91645..93312+ (Gracilaria gracilis GNS1m male)
ATGGACTCAGAAAAGACAACAGAATGCTCCGAACTATCCAAGTTTTCACC
ACCCATTGCTTTGGATAGTTCACAGGTTTCGGGCTGGAAGTCGCCTAACA
GGTTATCACTCTTTAAGAGTAGAACTCTTCCCGACAATGGTGGTGTAGCC
TTCGCAGGCGGACGCATTAGCGTTCTAAAGTGGCATCCACAAGTTGAAGG
GATTTTAGCTACAGCGGCACACAGATCCGACCAACCAGTGCATGAAGTTC
TTGAATCGTATACTGGGACCGGCCACATTCAAATATGGTGCATTGGAAAG
GGTAAAGCCGTTTGTCTGGGTGTCGTTCCGCATAATGGTGACTGTACCTG
GGATCTGAAGTGGAGACCCACGATTGGAGATCCAGAATCGGGGAACGGGT
GGAATGGAACATTTGCCGCAGCTCTTGGAGATGGAACTATCTTGATATGC
TGCTTCAAGGGCATTAGTCGTCACTCGAATGGTTGCAACACAGAGTCGCG
CCGAATTCCTGTTCTGCCTTGTTCACAAACCATCCTTCGGGCAAACACGG
ATGGTTCTCTGCAAAGACCTGTTCGTGTGGTGCAATGGTCCTTAGATGGC
AAACGTCTTCTCGTTGGCTGTGTCACTGGTTCTTTGGAAGTATATGAATC
ATCCCCTTCTGAATCAGTATGGCCAAAATGGAGTGTTCCAGCTCAAGAGT
CAATAGTGACGGATATAAGATGGGTGAATCGGTATCTATTTTGTTGTTTA
GGGACATCATGTGCTCTTCGACTGCGAGATATCCGTGATCCAATTGCTAC
AATTGAGCAGAATGCCGAAGGACTGGCGGGAAGCCTTAGTATGTGCATGG
CAGAACCTAACGTTGCAGTGGTCGGAGGAGATACAGGTCACCTCCGTGTA
GTGAGACTGTGTGGAACGGATAACTTCAAAGCTAAGGATCCAGTACGAAG
AGTATATGTACAGGGGAACTCGTTTAGAACGATGCAGTCTGTTAGTGCGC
CACACAATGGGCTTTCTCGAAGCCTTGTGTTCACTGGAGGTTGTGAGGGA
ATTCTGCACGAAATCGCCTTCCCTCGACCTTTATGGCTGGGATATGAACA
GAGCAGCATATCCAAGACGAAGATAGGACAACTTCTTAGATGGCGTGTTC
ACGACAGTTCGCCAAACAAAAGTGATAACCATTTGACTCTACTGCTCACC
ATTGGTACCAGCGGTACCTCGACTATTGATAGTGCCCCCAAAAGTGCACA
AGGCAACGAACGGCAGGCTGTCGATGAAACTCAGAACAGCGTACAACGAG
TGCAAAAGAGCACTACTCAGCAAAGAACACGGAAGATCAGTGGCCCAAGC
GGGGACGACAAGCCTCTATTTGGCACAGCTTATCATCAATCTGTAACAAT
AACCCGAGTTGACGTGAGCATTCCCGATAGAAGAGTTGCCGTTGGTATAG
ACGGAGGTATCATTACGTGGCTGCAATTGAATCATAAGCTGTTCGAGTCT
TCTCTCGTTCGCACGAAGCCGCCGTCAACGAAGAAGGGAAAAAGATCTTC
CAGCAAGACAATGGAAGTTAAAACTGAGGACAATACGGTCCCCAACGAAT
TACATGGGGAGGCTGATCATGAATACAATGATGGCCCTCTTGCAGACGAG
AACGCACCCGAAAGTTGA