Ggra9359.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9359.t1
Unique NameGgra9359.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:85423..86571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_13156T0
PFAMsADH_N,ADH_zinc_N
Max annot lvl33154|Opisthokonta
Evalue2.55e-80
EggNOG OGsCOG1064@1|root,KOG0023@2759|Eukaryota,38EJ7@33154|Opisthokonta
Descriptionalcohol dehydrogenase (NADP ) activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9359Ggra9359Gracilaria gracilis GNS1m malegenetig00000883_pilon 85423..86571 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9359.t1.stop1Ggra9359.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 85423..85425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9359.t1.CDS1Ggra9359.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 85423..86571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9359.t1.exon1Ggra9359.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 85423..86571 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9359.t1.start1Ggra9359.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 86569..86571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9359.t1Ggra9359.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 85423..86571 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9359.t1 ID=Ggra9359.t1|Name=Ggra9359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MSPSPTDTLQTTEDKVDTKKPLTTEGYVVNERGAKLTLQPVTLPPMTATM
VQVKILMCGLCHTDVHMRDNDTGISDFPALLGHEGIGVVTHLGSSVRHLK
VGDRVALSWIRDSCSTCAACCVGRENICEEGYQGLFLSKAAGIWGSSPKQ
YNLHGGCFARHQRIEERFALKIPDGLPSDMACPLVCGGGTVFEPLCDYVT
PGKHVGVVGIGGLGTAAVKLAKLRGCIVWALSGTASKKDGILAAGAHKFV
HMKDVEDRKRVVGKLDLVVDTTPALMDVASMTELLRMGGTVCKVGLPFAN
DCTYSGDLRGLIFHQQKVAGSVVCGTKRFKEMMELVEANMEFMKDTGVWK
TEHVPMEKVNEAMEQLLEGKNRGYRFVLHWDM*
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spliced messenger RNA

>Ggra9359.t1 ID=Ggra9359.t1|Name=Ggra9359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000883_pilon:85423..86571- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCCGAGTCCAACCGATACGCTCCAAACTACCGAAGACAAGGTCGA
CACGAAAAAGCCGCTCACTACGGAGGGCTACGTTGTCAATGAACGAGGAG
CCAAGCTGACTCTGCAGCCAGTTACATTACCGCCCATGACAGCTACAATG
GTGCAAGTCAAGATCTTGATGTGTGGTCTATGCCATACTGACGTTCACAT
GAGAGATAACGATACTGGAATTTCCGATTTCCCGGCGCTACTGGGTCACG
AGGGTATTGGCGTAGTTACGCATCTGGGCTCCTCTGTTCGCCACCTCAAA
GTGGGCGACAGGGTCGCCCTGAGCTGGATTCGCGATTCGTGCAGCACATG
TGCCGCCTGTTGCGTCGGTCGCGAGAACATTTGTGAAGAGGGATACCAAG
GACTGTTCCTTTCGAAGGCCGCCGGTATATGGGGTTCCTCCCCGAAACAG
TACAATTTGCACGGCGGCTGTTTTGCACGTCATCAGAGGATCGAAGAGCG
GTTTGCCCTCAAGATTCCAGATGGGTTGCCGAGTGACATGGCATGCCCGC
TGGTGTGTGGCGGTGGTACGGTGTTTGAACCGTTGTGCGACTACGTGACA
CCAGGGAAGCATGTGGGTGTGGTTGGAATCGGAGGACTGGGGACTGCTGC
TGTGAAGCTGGCCAAATTGAGAGGTTGCATTGTTTGGGCGTTAAGCGGAA
CTGCTTCGAAGAAAGATGGCATTCTGGCAGCCGGTGCTCATAAATTCGTG
CACATGAAAGACGTGGAAGATCGCAAGAGAGTAGTCGGCAAGCTGGATTT
GGTTGTTGATACTACGCCGGCTCTTATGGATGTTGCTTCAATGACAGAGC
TGTTGCGAATGGGTGGGACGGTGTGCAAGGTAGGGCTTCCGTTTGCTAAT
GACTGCACGTATTCTGGAGATTTGAGAGGACTTATTTTCCATCAGCAGAA
AGTTGCTGGTTCTGTGGTTTGTGGGACTAAACGATTTAAGGAAATGATGG
AACTCGTAGAAGCGAATATGGAGTTTATGAAGGATACAGGTGTGTGGAAA
ACTGAGCATGTGCCCATGGAAAAGGTGAATGAAGCTATGGAACAGTTACT
TGAGGGCAAGAACCGTGGATATCGTTTTGTTCTGCACTGGGATATGTAA
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protein sequence of Ggra9359.t1

>Ggra9359.t1 ID=Ggra9359.t1|Name=Ggra9359.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MSPSPTDTLQTTEDKVDTKKPLTTEGYVVNERGAKLTLQPVTLPPMTATM
VQVKILMCGLCHTDVHMRDNDTGISDFPALLGHEGIGVVTHLGSSVRHLK
VGDRVALSWIRDSCSTCAACCVGRENICEEGYQGLFLSKAAGIWGSSPKQ
YNLHGGCFARHQRIEERFALKIPDGLPSDMACPLVCGGGTVFEPLCDYVT
PGKHVGVVGIGGLGTAAVKLAKLRGCIVWALSGTASKKDGILAAGAHKFV
HMKDVEDRKRVVGKLDLVVDTTPALMDVASMTELLRMGGTVCKVGLPFAN
DCTYSGDLRGLIFHQQKVAGSVVCGTKRFKEMMELVEANMEFMKDTGVWK
TEHVPMEKVNEAMEQLLEGKNRGYRFVLHWDM*
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mRNA from alignment at tig00000883_pilon:85423..86571-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9359.t1 ID=Ggra9359.t1|Name=Ggra9359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000883_pilon:85423..86571- (Gracilaria gracilis GNS1m male)
ATGAGTCCGAGTCCAACCGATACGCTCCAAACTACCGAAGACAAGGTCGA
CACGAAAAAGCCGCTCACTACGGAGGGCTACGTTGTCAATGAACGAGGAG
CCAAGCTGACTCTGCAGCCAGTTACATTACCGCCCATGACAGCTACAATG
GTGCAAGTCAAGATCTTGATGTGTGGTCTATGCCATACTGACGTTCACAT
GAGAGATAACGATACTGGAATTTCCGATTTCCCGGCGCTACTGGGTCACG
AGGGTATTGGCGTAGTTACGCATCTGGGCTCCTCTGTTCGCCACCTCAAA
GTGGGCGACAGGGTCGCCCTGAGCTGGATTCGCGATTCGTGCAGCACATG
TGCCGCCTGTTGCGTCGGTCGCGAGAACATTTGTGAAGAGGGATACCAAG
GACTGTTCCTTTCGAAGGCCGCCGGTATATGGGGTTCCTCCCCGAAACAG
TACAATTTGCACGGCGGCTGTTTTGCACGTCATCAGAGGATCGAAGAGCG
GTTTGCCCTCAAGATTCCAGATGGGTTGCCGAGTGACATGGCATGCCCGC
TGGTGTGTGGCGGTGGTACGGTGTTTGAACCGTTGTGCGACTACGTGACA
CCAGGGAAGCATGTGGGTGTGGTTGGAATCGGAGGACTGGGGACTGCTGC
TGTGAAGCTGGCCAAATTGAGAGGTTGCATTGTTTGGGCGTTAAGCGGAA
CTGCTTCGAAGAAAGATGGCATTCTGGCAGCCGGTGCTCATAAATTCGTG
CACATGAAAGACGTGGAAGATCGCAAGAGAGTAGTCGGCAAGCTGGATTT
GGTTGTTGATACTACGCCGGCTCTTATGGATGTTGCTTCAATGACAGAGC
TGTTGCGAATGGGTGGGACGGTGTGCAAGGTAGGGCTTCCGTTTGCTAAT
GACTGCACGTATTCTGGAGATTTGAGAGGACTTATTTTCCATCAGCAGAA
AGTTGCTGGTTCTGTGGTTTGTGGGACTAAACGATTTAAGGAAATGATGG
AACTCGTAGAAGCGAATATGGAGTTTATGAAGGATACAGGTGTGTGGAAA
ACTGAGCATGTGCCCATGGAAAAGGTGAATGAAGCTATGGAACAGTTACT
TGAGGGCAAGAACCGTGGATATCGTTTTGTTCTGCACTGGGATATGTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:85423..86571-

>Ggra9359.t1 ID=Ggra9359.t1|Name=Ggra9359.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000883_pilon:85423..86571- (Gracilaria gracilis GNS1m male)
ATGAGTCCGAGTCCAACCGATACGCTCCAAACTACCGAAGACAAGGTCGA
CACGAAAAAGCCGCTCACTACGGAGGGCTACGTTGTCAATGAACGAGGAG
CCAAGCTGACTCTGCAGCCAGTTACATTACCGCCCATGACAGCTACAATG
GTGCAAGTCAAGATCTTGATGTGTGGTCTATGCCATACTGACGTTCACAT
GAGAGATAACGATACTGGAATTTCCGATTTCCCGGCGCTACTGGGTCACG
AGGGTATTGGCGTAGTTACGCATCTGGGCTCCTCTGTTCGCCACCTCAAA
GTGGGCGACAGGGTCGCCCTGAGCTGGATTCGCGATTCGTGCAGCACATG
TGCCGCCTGTTGCGTCGGTCGCGAGAACATTTGTGAAGAGGGATACCAAG
GACTGTTCCTTTCGAAGGCCGCCGGTATATGGGGTTCCTCCCCGAAACAG
TACAATTTGCACGGCGGCTGTTTTGCACGTCATCAGAGGATCGAAGAGCG
GTTTGCCCTCAAGATTCCAGATGGGTTGCCGAGTGACATGGCATGCCCGC
TGGTGTGTGGCGGTGGTACGGTGTTTGAACCGTTGTGCGACTACGTGACA
CCAGGGAAGCATGTGGGTGTGGTTGGAATCGGAGGACTGGGGACTGCTGC
TGTGAAGCTGGCCAAATTGAGAGGTTGCATTGTTTGGGCGTTAAGCGGAA
CTGCTTCGAAGAAAGATGGCATTCTGGCAGCCGGTGCTCATAAATTCGTG
CACATGAAAGACGTGGAAGATCGCAAGAGAGTAGTCGGCAAGCTGGATTT
GGTTGTTGATACTACGCCGGCTCTTATGGATGTTGCTTCAATGACAGAGC
TGTTGCGAATGGGTGGGACGGTGTGCAAGGTAGGGCTTCCGTTTGCTAAT
GACTGCACGTATTCTGGAGATTTGAGAGGACTTATTTTCCATCAGCAGAA
AGTTGCTGGTTCTGTGGTTTGTGGGACTAAACGATTTAAGGAAATGATGG
AACTCGTAGAAGCGAATATGGAGTTTATGAAGGATACAGGTGTGTGGAAA
ACTGAGCATGTGCCCATGGAAAAGGTGAATGAAGCTATGGAACAGTTACT
TGAGGGCAAGAACCGTGGATATCGTTTTGTTCTGCACTGGGATATGTAA
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