Ggra9357.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9357.t1
Unique NameGgra9357.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length721
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:80629..82791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog489825.LYNGBM3L_17460
Preferred nametktA
PFAMsTransket_pyr,Transketolase_C,Transketolase_N
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615
KEGG ReactionR01067,R01641,R01830,R06590
KEGG Pathwayko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167
Evalue1.82e-294
EggNOG OGsCOG0021@1|root,COG0021@2|Bacteria,1G0GC@1117|Cyanobacteria,1H7T2@1150|Oscillatoriales
EC2.2.1.1
DescriptionCatalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9357Ggra9357Gracilaria gracilis GNS1m malegenetig00000883_pilon 80629..82791 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9357.t1.stop1Ggra9357.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 80629..80631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9357.t1.CDS1Ggra9357.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 80629..82791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9357.t1.exon1Ggra9357.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 80629..82791 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9357.t1.start1Ggra9357.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 82789..82791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9357.t1Ggra9357.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 80629..82791 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9357.t1 ID=Ggra9357.t1|Name=Ggra9357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=721bp
MAFVSSFVPASVAPRLQSRSSCFVAAPRVGAPVARAARFVPSMVASEPAS
TTLQTGDQFLDDCINAIRFLAIDAVEKAKSGHPGMPMGMAPASYVLWKKF
MNFNPKNPNFVNRDRFVLSAGHGSMLLYALLYLFGYDSVTIDDIKQFRQY
LSRTPGHPENFETEGVEVTTGPLGQGICNAVGIAMAEAHIEAVYNKPDIS
IIDNYTYCILGDGCNMEGVSGEACSLAGHYGLGKLIAIYDDNHISIDGHT
DISFTEDVGKRFEAYGWQVINVPSGNTDVVALEKAIAEAKACTDKPTLIK
VTTIIGYGSPNKADSHDSHGAALGTDEVAATREALGWKYQPFEVPQNVMD
HYREKVADGAACEAAWNDTFAAYKAKYPELAAQFEKFVINKELPPEVEQA
LVDVAMETPAKPTRQLSQIMLNTIAPIYPPFIGGSADLAGSNLTIMKGFG
DFQKATPEGRNLRFGVREHGMVAIANGIAQAGYGLRPYTATFFVFTDYAR
GAMRLSSLARTGVINVTTHDSVFLGEDGPTHQPIEHLASFRAMPNHYMYR
PADPIETAAAYSVALQSTKTPTTMAYTRQKTCILEGGSFEGAKKGMYVLS
DDSDNGIPDMILIGTGSETELAQEAAKQLRESGKTVRVVSAPCVDIFEEQ
SESYKDSVLPAIVPKSKRLVVEAATSYGWSKYAENFVCIDGFGISAPGKD
DMKKHFGMTVENVVEKAKAM*
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spliced messenger RNA

>Ggra9357.t1 ID=Ggra9357.t1|Name=Ggra9357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000883_pilon:80629..82791- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTCTCGTCGTTCGTCCCGGCTTCCGTCGCGCCTCGCCTGCA
GTCCCGTTCGTCATGCTTCGTGGCTGCGCCGCGCGTCGGCGCGCCGGTGG
CGCGCGCCGCCAGGTTCGTGCCCTCTATGGTGGCGTCCGAGCCCGCCAGT
ACTACGCTGCAGACCGGAGATCAGTTCCTGGATGACTGCATCAACGCCAT
TCGCTTCCTGGCCATTGACGCCGTGGAGAAGGCAAAGTCGGGGCACCCCG
GCATGCCCATGGGCATGGCCCCCGCTTCCTACGTGCTGTGGAAGAAGTTC
ATGAACTTCAACCCCAAGAACCCCAACTTTGTCAACCGCGATCGCTTCGT
GCTTTCGGCTGGCCATGGATCCATGTTGTTGTATGCTCTCTTGTATCTGT
TTGGATACGACTCAGTTACCATTGATGATATCAAGCAGTTCCGTCAGTAC
CTCTCGCGAACCCCCGGTCATCCGGAGAACTTTGAGACCGAGGGTGTCGA
GGTCACCACCGGCCCGCTTGGCCAGGGTATTTGCAATGCCGTTGGTATCG
CCATGGCCGAGGCTCACATCGAAGCCGTGTACAACAAGCCGGATATCTCC
ATCATTGACAACTACACCTACTGCATCTTGGGTGACGGCTGCAACATGGA
GGGTGTGTCCGGTGAGGCCTGCTCGCTGGCTGGTCACTACGGCCTTGGAA
AGCTCATTGCTATCTACGATGACAACCACATTTCCATTGACGGTCACACC
GACATCTCCTTCACTGAGGACGTCGGAAAGCGCTTTGAGGCTTATGGATG
GCAGGTTATCAATGTTCCAAGCGGCAACACCGATGTGGTTGCCCTTGAAA
AGGCCATCGCCGAGGCCAAGGCATGCACCGACAAGCCTACCCTCATCAAG
GTCACCACCATCATTGGATATGGATCTCCCAACAAGGCTGACAGTCACGA
CAGTCATGGTGCCGCTCTCGGAACTGACGAAGTTGCTGCCACCCGTGAAG
CTCTTGGATGGAAGTACCAACCGTTCGAGGTTCCGCAGAACGTGATGGAT
CACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAGGCGGCGTGGAA
CGACACCTTTGCCGCGTACAAGGCCAAGTATCCAGAACTGGCCGCTCAAT
TCGAGAAGTTCGTCATCAACAAAGAGCTGCCGCCTGAGGTCGAACAGGCT
CTGGTCGATGTCGCCATGGAGACACCTGCGAAGCCCACTCGTCAGCTCTC
GCAGATTATGCTCAACACTATTGCGCCGATTTACCCGCCGTTCATCGGTG
GATCGGCTGATCTTGCTGGCTCTAATCTCACCATCATGAAGGGCTTTGGC
GACTTCCAGAAGGCTACGCCTGAGGGTCGCAACCTTCGCTTTGGTGTGCG
TGAACACGGTATGGTTGCCATTGCCAACGGTATCGCGCAGGCTGGCTATG
GTCTCAGGCCGTACACTGCTACTTTCTTCGTGTTTACTGATTACGCTCGT
GGTGCCATGCGTCTGTCGTCGCTTGCACGTACCGGTGTGATCAATGTGAC
CACTCATGACTCTGTGTTCCTTGGAGAGGATGGTCCCACTCATCAGCCCA
TCGAGCATTTGGCTTCGTTCAGAGCGATGCCCAACCACTACATGTACCGA
CCGGCTGACCCGATCGAGACGGCTGCGGCGTACTCTGTTGCTCTGCAGAG
CACCAAGACGCCCACTACCATGGCGTACACGCGACAGAAGACTTGCATTC
TGGAGGGTGGCTCTTTCGAGGGCGCCAAGAAGGGTATGTACGTGCTGAGC
GATGACTCGGACAACGGTATCCCAGACATGATTCTGATTGGAACTGGGTC
TGAGACTGAGCTGGCACAAGAGGCAGCCAAGCAATTGAGAGAGAGCGGAA
AGACTGTGCGCGTTGTTTCTGCGCCTTGCGTGGATATCTTTGAGGAACAG
AGTGAGTCGTACAAGGACAGCGTTCTGCCAGCGATTGTGCCCAAGTCGAA
GAGATTGGTAGTGGAGGCTGCTACAAGCTATGGATGGTCAAAGTACGCAG
AAAACTTTGTGTGCATTGATGGATTCGGTATCTCGGCACCTGGAAAGGAT
GACATGAAGAAACACTTTGGTATGACTGTTGAGAACGTTGTGGAGAAGGC
AAAGGCCATGTAG
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protein sequence of Ggra9357.t1

>Ggra9357.t1 ID=Ggra9357.t1|Name=Ggra9357.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=721bp
MAFVSSFVPASVAPRLQSRSSCFVAAPRVGAPVARAARFVPSMVASEPAS
TTLQTGDQFLDDCINAIRFLAIDAVEKAKSGHPGMPMGMAPASYVLWKKF
MNFNPKNPNFVNRDRFVLSAGHGSMLLYALLYLFGYDSVTIDDIKQFRQY
LSRTPGHPENFETEGVEVTTGPLGQGICNAVGIAMAEAHIEAVYNKPDIS
IIDNYTYCILGDGCNMEGVSGEACSLAGHYGLGKLIAIYDDNHISIDGHT
DISFTEDVGKRFEAYGWQVINVPSGNTDVVALEKAIAEAKACTDKPTLIK
VTTIIGYGSPNKADSHDSHGAALGTDEVAATREALGWKYQPFEVPQNVMD
HYREKVADGAACEAAWNDTFAAYKAKYPELAAQFEKFVINKELPPEVEQA
LVDVAMETPAKPTRQLSQIMLNTIAPIYPPFIGGSADLAGSNLTIMKGFG
DFQKATPEGRNLRFGVREHGMVAIANGIAQAGYGLRPYTATFFVFTDYAR
GAMRLSSLARTGVINVTTHDSVFLGEDGPTHQPIEHLASFRAMPNHYMYR
PADPIETAAAYSVALQSTKTPTTMAYTRQKTCILEGGSFEGAKKGMYVLS
DDSDNGIPDMILIGTGSETELAQEAAKQLRESGKTVRVVSAPCVDIFEEQ
SESYKDSVLPAIVPKSKRLVVEAATSYGWSKYAENFVCIDGFGISAPGKD
DMKKHFGMTVENVVEKAKAM*
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mRNA from alignment at tig00000883_pilon:80629..82791-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9357.t1 ID=Ggra9357.t1|Name=Ggra9357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000883_pilon:80629..82791- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTCTCGTCGTTCGTCCCGGCTTCCGTCGCGCCTCGCCTGCA
GTCCCGTTCGTCATGCTTCGTGGCTGCGCCGCGCGTCGGCGCGCCGGTGG
CGCGCGCCGCCAGGTTCGTGCCCTCTATGGTGGCGTCCGAGCCCGCCAGT
ACTACGCTGCAGACCGGAGATCAGTTCCTGGATGACTGCATCAACGCCAT
TCGCTTCCTGGCCATTGACGCCGTGGAGAAGGCAAAGTCGGGGCACCCCG
GCATGCCCATGGGCATGGCCCCCGCTTCCTACGTGCTGTGGAAGAAGTTC
ATGAACTTCAACCCCAAGAACCCCAACTTTGTCAACCGCGATCGCTTCGT
GCTTTCGGCTGGCCATGGATCCATGTTGTTGTATGCTCTCTTGTATCTGT
TTGGATACGACTCAGTTACCATTGATGATATCAAGCAGTTCCGTCAGTAC
CTCTCGCGAACCCCCGGTCATCCGGAGAACTTTGAGACCGAGGGTGTCGA
GGTCACCACCGGCCCGCTTGGCCAGGGTATTTGCAATGCCGTTGGTATCG
CCATGGCCGAGGCTCACATCGAAGCCGTGTACAACAAGCCGGATATCTCC
ATCATTGACAACTACACCTACTGCATCTTGGGTGACGGCTGCAACATGGA
GGGTGTGTCCGGTGAGGCCTGCTCGCTGGCTGGTCACTACGGCCTTGGAA
AGCTCATTGCTATCTACGATGACAACCACATTTCCATTGACGGTCACACC
GACATCTCCTTCACTGAGGACGTCGGAAAGCGCTTTGAGGCTTATGGATG
GCAGGTTATCAATGTTCCAAGCGGCAACACCGATGTGGTTGCCCTTGAAA
AGGCCATCGCCGAGGCCAAGGCATGCACCGACAAGCCTACCCTCATCAAG
GTCACCACCATCATTGGATATGGATCTCCCAACAAGGCTGACAGTCACGA
CAGTCATGGTGCCGCTCTCGGAACTGACGAAGTTGCTGCCACCCGTGAAG
CTCTTGGATGGAAGTACCAACCGTTCGAGGTTCCGCAGAACGTGATGGAT
CACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAGGCGGCGTGGAA
CGACACCTTTGCCGCGTACAAGGCCAAGTATCCAGAACTGGCCGCTCAAT
TCGAGAAGTTCGTCATCAACAAAGAGCTGCCGCCTGAGGTCGAACAGGCT
CTGGTCGATGTCGCCATGGAGACACCTGCGAAGCCCACTCGTCAGCTCTC
GCAGATTATGCTCAACACTATTGCGCCGATTTACCCGCCGTTCATCGGTG
GATCGGCTGATCTTGCTGGCTCTAATCTCACCATCATGAAGGGCTTTGGC
GACTTCCAGAAGGCTACGCCTGAGGGTCGCAACCTTCGCTTTGGTGTGCG
TGAACACGGTATGGTTGCCATTGCCAACGGTATCGCGCAGGCTGGCTATG
GTCTCAGGCCGTACACTGCTACTTTCTTCGTGTTTACTGATTACGCTCGT
GGTGCCATGCGTCTGTCGTCGCTTGCACGTACCGGTGTGATCAATGTGAC
CACTCATGACTCTGTGTTCCTTGGAGAGGATGGTCCCACTCATCAGCCCA
TCGAGCATTTGGCTTCGTTCAGAGCGATGCCCAACCACTACATGTACCGA
CCGGCTGACCCGATCGAGACGGCTGCGGCGTACTCTGTTGCTCTGCAGAG
CACCAAGACGCCCACTACCATGGCGTACACGCGACAGAAGACTTGCATTC
TGGAGGGTGGCTCTTTCGAGGGCGCCAAGAAGGGTATGTACGTGCTGAGC
GATGACTCGGACAACGGTATCCCAGACATGATTCTGATTGGAACTGGGTC
TGAGACTGAGCTGGCACAAGAGGCAGCCAAGCAATTGAGAGAGAGCGGAA
AGACTGTGCGCGTTGTTTCTGCGCCTTGCGTGGATATCTTTGAGGAACAG
AGTGAGTCGTACAAGGACAGCGTTCTGCCAGCGATTGTGCCCAAGTCGAA
GAGATTGGTAGTGGAGGCTGCTACAAGCTATGGATGGTCAAAGTACGCAG
AAAACTTTGTGTGCATTGATGGATTCGGTATCTCGGCACCTGGAAAGGAT
GACATGAAGAAACACTTTGGTATGACTGTTGAGAACGTTGTGGAGAAGGC
AAAGGCCATGTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:80629..82791-

>Ggra9357.t1 ID=Ggra9357.t1|Name=Ggra9357.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2163bp|location=Sequence derived from alignment at tig00000883_pilon:80629..82791- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTCTCGTCGTTCGTCCCGGCTTCCGTCGCGCCTCGCCTGCA
GTCCCGTTCGTCATGCTTCGTGGCTGCGCCGCGCGTCGGCGCGCCGGTGG
CGCGCGCCGCCAGGTTCGTGCCCTCTATGGTGGCGTCCGAGCCCGCCAGT
ACTACGCTGCAGACCGGAGATCAGTTCCTGGATGACTGCATCAACGCCAT
TCGCTTCCTGGCCATTGACGCCGTGGAGAAGGCAAAGTCGGGGCACCCCG
GCATGCCCATGGGCATGGCCCCCGCTTCCTACGTGCTGTGGAAGAAGTTC
ATGAACTTCAACCCCAAGAACCCCAACTTTGTCAACCGCGATCGCTTCGT
GCTTTCGGCTGGCCATGGATCCATGTTGTTGTATGCTCTCTTGTATCTGT
TTGGATACGACTCAGTTACCATTGATGATATCAAGCAGTTCCGTCAGTAC
CTCTCGCGAACCCCCGGTCATCCGGAGAACTTTGAGACCGAGGGTGTCGA
GGTCACCACCGGCCCGCTTGGCCAGGGTATTTGCAATGCCGTTGGTATCG
CCATGGCCGAGGCTCACATCGAAGCCGTGTACAACAAGCCGGATATCTCC
ATCATTGACAACTACACCTACTGCATCTTGGGTGACGGCTGCAACATGGA
GGGTGTGTCCGGTGAGGCCTGCTCGCTGGCTGGTCACTACGGCCTTGGAA
AGCTCATTGCTATCTACGATGACAACCACATTTCCATTGACGGTCACACC
GACATCTCCTTCACTGAGGACGTCGGAAAGCGCTTTGAGGCTTATGGATG
GCAGGTTATCAATGTTCCAAGCGGCAACACCGATGTGGTTGCCCTTGAAA
AGGCCATCGCCGAGGCCAAGGCATGCACCGACAAGCCTACCCTCATCAAG
GTCACCACCATCATTGGATATGGATCTCCCAACAAGGCTGACAGTCACGA
CAGTCATGGTGCCGCTCTCGGAACTGACGAAGTTGCTGCCACCCGTGAAG
CTCTTGGATGGAAGTACCAACCGTTCGAGGTTCCGCAGAACGTGATGGAT
CACTACCGTGAGAAGGTGGCTGACGGTGCCGCCTGCGAGGCGGCGTGGAA
CGACACCTTTGCCGCGTACAAGGCCAAGTATCCAGAACTGGCCGCTCAAT
TCGAGAAGTTCGTCATCAACAAAGAGCTGCCGCCTGAGGTCGAACAGGCT
CTGGTCGATGTCGCCATGGAGACACCTGCGAAGCCCACTCGTCAGCTCTC
GCAGATTATGCTCAACACTATTGCGCCGATTTACCCGCCGTTCATCGGTG
GATCGGCTGATCTTGCTGGCTCTAATCTCACCATCATGAAGGGCTTTGGC
GACTTCCAGAAGGCTACGCCTGAGGGTCGCAACCTTCGCTTTGGTGTGCG
TGAACACGGTATGGTTGCCATTGCCAACGGTATCGCGCAGGCTGGCTATG
GTCTCAGGCCGTACACTGCTACTTTCTTCGTGTTTACTGATTACGCTCGT
GGTGCCATGCGTCTGTCGTCGCTTGCACGTACCGGTGTGATCAATGTGAC
CACTCATGACTCTGTGTTCCTTGGAGAGGATGGTCCCACTCATCAGCCCA
TCGAGCATTTGGCTTCGTTCAGAGCGATGCCCAACCACTACATGTACCGA
CCGGCTGACCCGATCGAGACGGCTGCGGCGTACTCTGTTGCTCTGCAGAG
CACCAAGACGCCCACTACCATGGCGTACACGCGACAGAAGACTTGCATTC
TGGAGGGTGGCTCTTTCGAGGGCGCCAAGAAGGGTATGTACGTGCTGAGC
GATGACTCGGACAACGGTATCCCAGACATGATTCTGATTGGAACTGGGTC
TGAGACTGAGCTGGCACAAGAGGCAGCCAAGCAATTGAGAGAGAGCGGAA
AGACTGTGCGCGTTGTTTCTGCGCCTTGCGTGGATATCTTTGAGGAACAG
AGTGAGTCGTACAAGGACAGCGTTCTGCCAGCGATTGTGCCCAAGTCGAA
GAGATTGGTAGTGGAGGCTGCTACAAGCTATGGATGGTCAAAGTACGCAG
AAAACTTTGTGTGCATTGATGGATTCGGTATCTCGGCACCTGGAAAGGAT
GACATGAAGAAACACTTTGGTATGACTGTTGAGAACGTTGTGGAGAAGGC
AAAGGCCATGTAG
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