Ggra935.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra935.t1
Unique Name	Ggra935.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:790928..792376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	452471.Aasi_0451
Preferred name	ylqF
PFAMs	MMR_HSR1
Max annot lvl	2\|Bacteria
KEGG ko	ko:K14540
GOs	GO:0003674,GO:0003824,GO:0003924,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022613,GO:0042254,GO:0044085,GO:0071840
Evalue	4.33e-17
EggNOG OGs	COG1161@1\|root,COG1161@2\|Bacteria
Description	GTP binding
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra935	Ggra935	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 790769..792376 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra935.t1.start1	Ggra935.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 790928..790930 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra935.t1.CDS1	Ggra935.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 790928..792376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra935.t1.exon1	Ggra935.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 790928..792376 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra935.t1.stop1	Ggra935.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 792374..792376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra935.t1	Ggra935.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 790928..792376 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:790928..792376+
coding sequence from alignment at tig00000049_pilon:790928..792376+

mRNA sequence

>Ggra935.t1 ID=Ggra935.t1|Name=Ggra935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MYPESTSSDLGGKSKDKPSGTDDPSLYVDIAGKIVLPNEECKVQHEVQDP
LDRMNPEEHRTAQEQWSTQHRFAEQQLPALQQYRASQENWAPQGPRVRQE
RRTTQESGIPQEGQTPKEHQTPEAIPYPAHLYPQHAQEHPTTLTGHEYTM
DPLPVSKQPFAQPSSPTAGKIKAQTTLSDNEVATKMPACFMDEPTAAISE
PIRVIVLGNPGVGKSTIQNTLVGEAVFESGISLGGGLTKRIESCAREGWT
FVDTPGLDDIYHRNTAAQELSKAFRGPCWAKIVFVTALEAGRVRAADVCT
LATIVTALKKAGVEMRDRYALIVNKCEPSLAEKLDNEHYRELRAKVLDPF
LLVEKTRQVRTIRLEVGLRGKGGVLFREEENAQLRQLVDRTPKIYFPAKP
EVRLDVENFESATQMMDEELNQRPNQAQQSAGAGRYKASETGGRKITHSQ
SGFGSERLGRWKSKLRGIISDMLETGVALSIA*

spliced messenger RNA

>Ggra935.t1 ID=Ggra935.t1|Name=Ggra935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000049_pilon:790928..792376+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCCGAAAGCACAAGTAGTGATCTTGGCGGCAAGAGTAAAGATAA
ACCTAGCGGAACAGATGACCCGTCCCTTTATGTTGATATCGCCGGTAAAA
TAGTTCTCCCCAATGAAGAATGCAAGGTTCAACATGAAGTGCAGGATCCT
CTAGACCGTATGAATCCAGAAGAACATCGGACGGCGCAAGAACAGTGGAG
CACCCAACATCGCTTTGCTGAACAACAACTTCCTGCTCTACAACAATACC
GAGCTTCGCAAGAAAACTGGGCCCCGCAAGGACCCAGGGTTCGGCAAGAA
CGCCGTACGACGCAAGAATCGGGAATTCCACAAGAAGGTCAGACTCCGAA
AGAACACCAAACACCAGAAGCCATCCCCTATCCGGCACATCTCTATCCTC
AACATGCCCAGGAGCATCCTACGACATTGACAGGACACGAATATACAATG
GACCCTCTGCCGGTCTCGAAGCAGCCTTTCGCACAACCTTCGTCACCAAC
GGCAGGTAAGATAAAAGCCCAAACTACTCTGTCGGACAATGAGGTCGCAA
CCAAGATGCCCGCTTGCTTCATGGATGAACCAACTGCAGCAATCAGCGAA
CCCATAAGAGTGATCGTTTTGGGGAATCCAGGAGTAGGTAAGTCAACCAT
CCAAAACACTCTAGTGGGAGAAGCAGTCTTCGAGTCTGGTATCTCTTTGG
GAGGAGGTCTTACGAAGCGCATTGAATCATGTGCAAGAGAAGGTTGGACG
TTCGTAGACACGCCTGGTTTGGATGATATATATCATAGAAATACGGCGGC
GCAGGAATTGTCAAAAGCTTTTCGTGGACCTTGTTGGGCTAAAATCGTGT
TTGTCACGGCTTTGGAAGCGGGTCGTGTTCGTGCAGCTGATGTGTGTACG
CTGGCGACCATTGTGACAGCATTGAAGAAAGCAGGAGTGGAAATGCGTGA
TCGATATGCGCTGATTGTGAACAAATGTGAGCCTTCATTGGCTGAGAAGC
TTGATAATGAGCACTACCGTGAACTTCGTGCCAAGGTGTTGGATCCGTTT
CTCCTGGTGGAGAAAACAAGACAAGTAAGAACCATTAGACTTGAAGTGGG
TTTGCGTGGAAAGGGTGGTGTTTTGTTTAGAGAAGAAGAAAACGCTCAGC
TACGGCAATTGGTGGATCGCACGCCAAAGATTTATTTTCCTGCAAAGCCG
GAGGTGAGGTTAGACGTTGAAAACTTTGAAAGTGCGACGCAAATGATGGA
CGAAGAGTTGAATCAACGCCCTAATCAAGCCCAACAAAGTGCAGGAGCTG
GTAGATACAAAGCTTCTGAAACTGGAGGCAGAAAGATAACCCATTCGCAG
TCTGGTTTCGGGAGCGAGAGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGG
AATTATCTCCGATATGCTTGAAACtggggtggcgttgtccatcgcgtag

protein sequence of Ggra935.t1

>Ggra935.t1 ID=Ggra935.t1|Name=Ggra935.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MYPESTSSDLGGKSKDKPSGTDDPSLYVDIAGKIVLPNEECKVQHEVQDP
LDRMNPEEHRTAQEQWSTQHRFAEQQLPALQQYRASQENWAPQGPRVRQE
RRTTQESGIPQEGQTPKEHQTPEAIPYPAHLYPQHAQEHPTTLTGHEYTM
DPLPVSKQPFAQPSSPTAGKIKAQTTLSDNEVATKMPACFMDEPTAAISE
PIRVIVLGNPGVGKSTIQNTLVGEAVFESGISLGGGLTKRIESCAREGWT
FVDTPGLDDIYHRNTAAQELSKAFRGPCWAKIVFVTALEAGRVRAADVCT
LATIVTALKKAGVEMRDRYALIVNKCEPSLAEKLDNEHYRELRAKVLDPF
LLVEKTRQVRTIRLEVGLRGKGGVLFREEENAQLRQLVDRTPKIYFPAKP
EVRLDVENFESATQMMDEELNQRPNQAQQSAGAGRYKASETGGRKITHSQ
SGFGSERLGRWKSKLRGIISDMLETGVALSIA*

mRNA from alignment at tig00000049_pilon:790928..792376+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra935.t1 ID=Ggra935.t1|Name=Ggra935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000049_pilon:790928..792376+ (Gracilaria gracilis GNS1m male)
ATGTATCCCGAAAGCACAAGTAGTGATCTTGGCGGCAAGAGTAAAGATAA
ACCTAGCGGAACAGATGACCCGTCCCTTTATGTTGATATCGCCGGTAAAA
TAGTTCTCCCCAATGAAGAATGCAAGGTTCAACATGAAGTGCAGGATCCT
CTAGACCGTATGAATCCAGAAGAACATCGGACGGCGCAAGAACAGTGGAG
CACCCAACATCGCTTTGCTGAACAACAACTTCCTGCTCTACAACAATACC
GAGCTTCGCAAGAAAACTGGGCCCCGCAAGGACCCAGGGTTCGGCAAGAA
CGCCGTACGACGCAAGAATCGGGAATTCCACAAGAAGGTCAGACTCCGAA
AGAACACCAAACACCAGAAGCCATCCCCTATCCGGCACATCTCTATCCTC
AACATGCCCAGGAGCATCCTACGACATTGACAGGACACGAATATACAATG
GACCCTCTGCCGGTCTCGAAGCAGCCTTTCGCACAACCTTCGTCACCAAC
GGCAGGTAAGATAAAAGCCCAAACTACTCTGTCGGACAATGAGGTCGCAA
CCAAGATGCCCGCTTGCTTCATGGATGAACCAACTGCAGCAATCAGCGAA
CCCATAAGAGTGATCGTTTTGGGGAATCCAGGAGTAGGTAAGTCAACCAT
CCAAAACACTCTAGTGGGAGAAGCAGTCTTCGAGTCTGGTATCTCTTTGG
GAGGAGGTCTTACGAAGCGCATTGAATCATGTGCAAGAGAAGGTTGGACG
TTCGTAGACACGCCTGGTTTGGATGATATATATCATAGAAATACGGCGGC
GCAGGAATTGTCAAAAGCTTTTCGTGGACCTTGTTGGGCTAAAATCGTGT
TTGTCACGGCTTTGGAAGCGGGTCGTGTTCGTGCAGCTGATGTGTGTACG
CTGGCGACCATTGTGACAGCATTGAAGAAAGCAGGAGTGGAAATGCGTGA
TCGATATGCGCTGATTGTGAACAAATGTGAGCCTTCATTGGCTGAGAAGC
TTGATAATGAGCACTACCGTGAACTTCGTGCCAAGGTGTTGGATCCGTTT
CTCCTGGTGGAGAAAACAAGACAAGTAAGAACCATTAGACTTGAAGTGGG
TTTGCGTGGAAAGGGTGGTGTTTTGTTTAGAGAAGAAGAAAACGCTCAGC
TACGGCAATTGGTGGATCGCACGCCAAAGATTTATTTTCCTGCAAAGCCG
GAGGTGAGGTTAGACGTTGAAAACTTTGAAAGTGCGACGCAAATGATGGA
CGAAGAGTTGAATCAACGCCCTAATCAAGCCCAACAAAGTGCAGGAGCTG
GTAGATACAAAGCTTCTGAAACTGGAGGCAGAAAGATAACCCATTCGCAG
TCTGGTTTCGGGAGCGAGAGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGG
AATTATCTCCGATATGCTTGAAACtggggtggcgttgtccatcgcgtag

Coding sequence (CDS) from alignment at tig00000049_pilon:790928..792376+

>Ggra935.t1 ID=Ggra935.t1|Name=Ggra935.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000049_pilon:790928..792376+ (Gracilaria gracilis GNS1m male)
ATGTATCCCGAAAGCACAAGTAGTGATCTTGGCGGCAAGAGTAAAGATAA
ACCTAGCGGAACAGATGACCCGTCCCTTTATGTTGATATCGCCGGTAAAA
TAGTTCTCCCCAATGAAGAATGCAAGGTTCAACATGAAGTGCAGGATCCT
CTAGACCGTATGAATCCAGAAGAACATCGGACGGCGCAAGAACAGTGGAG
CACCCAACATCGCTTTGCTGAACAACAACTTCCTGCTCTACAACAATACC
GAGCTTCGCAAGAAAACTGGGCCCCGCAAGGACCCAGGGTTCGGCAAGAA
CGCCGTACGACGCAAGAATCGGGAATTCCACAAGAAGGTCAGACTCCGAA
AGAACACCAAACACCAGAAGCCATCCCCTATCCGGCACATCTCTATCCTC
AACATGCCCAGGAGCATCCTACGACATTGACAGGACACGAATATACAATG
GACCCTCTGCCGGTCTCGAAGCAGCCTTTCGCACAACCTTCGTCACCAAC
GGCAGGTAAGATAAAAGCCCAAACTACTCTGTCGGACAATGAGGTCGCAA
CCAAGATGCCCGCTTGCTTCATGGATGAACCAACTGCAGCAATCAGCGAA
CCCATAAGAGTGATCGTTTTGGGGAATCCAGGAGTAGGTAAGTCAACCAT
CCAAAACACTCTAGTGGGAGAAGCAGTCTTCGAGTCTGGTATCTCTTTGG
GAGGAGGTCTTACGAAGCGCATTGAATCATGTGCAAGAGAAGGTTGGACG
TTCGTAGACACGCCTGGTTTGGATGATATATATCATAGAAATACGGCGGC
GCAGGAATTGTCAAAAGCTTTTCGTGGACCTTGTTGGGCTAAAATCGTGT
TTGTCACGGCTTTGGAAGCGGGTCGTGTTCGTGCAGCTGATGTGTGTACG
CTGGCGACCATTGTGACAGCATTGAAGAAAGCAGGAGTGGAAATGCGTGA
TCGATATGCGCTGATTGTGAACAAATGTGAGCCTTCATTGGCTGAGAAGC
TTGATAATGAGCACTACCGTGAACTTCGTGCCAAGGTGTTGGATCCGTTT
CTCCTGGTGGAGAAAACAAGACAAGTAAGAACCATTAGACTTGAAGTGGG
TTTGCGTGGAAAGGGTGGTGTTTTGTTTAGAGAAGAAGAAAACGCTCAGC
TACGGCAATTGGTGGATCGCACGCCAAAGATTTATTTTCCTGCAAAGCCG
GAGGTGAGGTTAGACGTTGAAAACTTTGAAAGTGCGACGCAAATGATGGA
CGAAGAGTTGAATCAACGCCCTAATCAAGCCCAACAAAGTGCAGGAGCTG
GTAGATACAAAGCTTCTGAAACTGGAGGCAGAAAGATAACCCATTCGCAG
TCTGGTTTCGGGAGCGAGAGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGG
AATTATCTCCGATATGCTTGAAACtggggtggcgttgtccatcgcgtag