Ggra9349.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9349.t1
Unique NameGgra9349.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length704
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:52065..54176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9349Ggra9349Gracilaria gracilis GNS1m malegenetig00000883_pilon 52065..54176 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1.stop1Ggra9349.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 52065..52067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1.CDS1Ggra9349.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 52065..54176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1.exon1Ggra9349.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 52065..54176 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1.start1Ggra9349.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 54174..54176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1Ggra9349.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 52065..54176 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=704bp
MSTSQRGANRRPSPPILPALLEVHRRGKPPFLVRNLRYVHDDRQRARRRL
WDISWTRPSYRSAPGARHLLLTVRPSRCVLRAGIRTRLFNTRLFRDGEYV
PLTAAMRLCLCVRQEGGHYVSFSLRDLSVRVWPAEDLSAGLVEPSDVAIR
ETFDISAVLPVLSSDAEALSLVVELMPTANDNSAANRTSDKLRGELVLWE
KGSANGTVVPNGFVTLPLYLVNDSATQPKHVVLERAVRQSSASFAPLKGD
LPFVGAGAASIVLQLEGAPQHSISKAVRRHKPNLMITLTYTSQQVPHWDG
IVRHDFVCPWCHRNCYRYRTLLCHFQMEHEQMKFQLTSLKSAKPSDGDGA
RSTTAARNETVPFLLRFSVERMDPQPAQSVDPLSSSVPKRMRSSDGTVQL
PEQIIYANPHRYASYVANANNSAGADEKVREAVERVSLRDNALSSDLQSV
ASTELYDNTRRDILSAVQEELSRCCKHCQRPHDFAYKANTEFCSEWCEAI
YTINRDEDGVSLRGNQRYFPLTSFSSCNARKRFDFRQSLGHRKLFHVVTM
TPVKEEHYDEDDPDSEDEVDQSWRGRLAIERAMYLENTTTTETLFMVMWN
KFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRVLH
MHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSVPGSNGRGSRSRRFG
ART*
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spliced messenger RNA

>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00000883_pilon:52065..54176- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGTCGCAGCGCGGCGCTAATCGACGTCCATCACCACCCATCCT
ACCAGCGTTACTTGAGGTCCATCGCCGTGGGAAGCCACCCTTTCTCGTCC
GCAATCTACGTTATGTACACGACGATCGTCAACGAGCGCGCCGTCGACTG
TGGGATATCTCGTGGACCCGTCCTTCATATCGCTCCGCGCCCGGCGCTCG
ACACCTCTTGCTCACAGTTCGCCCCAGTCGCTGCGTGCTGCGCGCAGGCA
TTCGCACAAGATTGTTTAACACTCGCCTGTTTCGCGATGGCGAGTACGTA
CCGTTGACTGCGGCGATGCGACTTTGTTTGTGCGTTAGGCAGGAGGGCGG
TCATTACGTGTCCTTTTCGTTGAGAGACTTGTCTGTTCGCGTTTGGCCGG
CTGAGGATCTCTCCGCCGGATTGGTGGAACCGTCTGACGTCGCAATTAGA
GAAACTTTTGACATCTCTGCCGTTTTGCCGGTGTTGTCGTCTGATGCAGA
GGCTCTTAGTCTTGTTGTGGAGCTCATGCCCACCGCGAATGATAATTCTG
CTGCGAATCGAACTTCCGATAAGCTGCGTGGAGAGCTTGTGCTTTGGGAG
AAGGGGTCTGCCAATGGAACTGTTGTACCGAATGGTTTTGTAACGCTGCC
TTTGTACCTTGTCAATGACAGCGCTACACAACCGAAGCACGTAGTTTTGG
AACGCGCTGTACGGCAGTCGAGCGCGTCGTTTGCTCCGCTGAAGGGTGAT
CTGCCATTTGTTGGAGCGGGTGCTGCGAGCATCGTTTTGCAGTTGGAGGG
AGCCCCACAACATTCCATTTCTAAAGCGGTGCGACGACACAAGCCGAACC
TCATGATCACGCTTACATACACTTCGCAACAGGTACCGCATTGGGATGGC
ATCGTACGACACGATTTTGTTTGTCCTTGGTGTCATAGAAACTGTTACAG
ATATCGAACGCTTCTGTGTCACTTTCAAATGGAGCATGAACAAATGAAGT
TTCAATTGACCAGTCTCAAATCTGCCAAGCCTTCCGACGGCGATGGTGCT
CGTTCCACCACCGCTGCTCGCAACGAGACCGTCCCTTTCCTGCTACGATT
CAGCGTGGAGCGCATGGATCCTCAACCAGCACAATCGGTTGACCCACTTT
CGTCATCGGTACCTAAGAGAATGCGTTCCAGTGATGGCACTGTACAACTA
CCCGAACAAATTATTTATGCCAATCCGCACCGCTATGCTTCGTATGTCGC
TAACGCAAACAACAGCGCCGGCGCCGATGAGAAAGTCAGGGAAGCCGTGG
AACGCGTCTCACTGCGAGACAATGCCTTATCCTCCGACTTGCAATCGGTA
GCTTCTACGGAATTGTATGACAACACGCGTCGCGACATTCTATCAGCAGT
ACAAGAAGAGCTAAGTAGGTGCTGCAAACACTGTCAAAGACCTCACGATT
TTGCGTACAAGGCGAACACCGAGTTTTGTTCAGAGTGGTGTGAGGCGATT
TACACCATCAATCGCGATGAAGATGGAGTGAGTCTTCGCGGGAATCAAAG
ATACTTCCCTCTAACTTCATTCTCGAGCTGCAATGCTAGAAAACGTTTCG
ATTTTCGACAAAGTCTCGGACATCGGAAGCTCTTTCATGTGGTCACCATG
ACGCCCGTGAAGGAGGAGCATTATGACGAAGACGACCCTGATTCGGAAGA
TGAAGTGGATCAGTCCTGGCGTGGTCGTTTAGCTATTGAACGTGCCATGT
ACTTGGAGAACACCACTACAACGGAAACTCTGTTTATGGTAATGTGGAAC
AAGTTTGCGCATGAAAATTTCCCGCTACCGTCGCTTTATGGCGACCGGTT
TACTAGGTATACATTGGAACTTTTTGCAATTGAGAACCGAGCTCATATCA
TTCGACTCAAACTGCGACTTAAGTTTCTTGCGTTCCTCCGCGTTTTGCAT
ATGCATGGTTTGATCGACTCGGTGGCTGTGTTGTCCATCTTCCAGTGCCT
CGATGGGAAAAAGAAGAGACGCGACATTGCGCTTAGTAGTCGACCAGAAA
GAAGTGTACCGGGAAGTAACGGGAGAGGAAGTCGAAGTCGGAGATTTGGA
GCTCGAACATGA
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protein sequence of Ggra9349.t1

>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=704bp
MSTSQRGANRRPSPPILPALLEVHRRGKPPFLVRNLRYVHDDRQRARRRL
WDISWTRPSYRSAPGARHLLLTVRPSRCVLRAGIRTRLFNTRLFRDGEYV
PLTAAMRLCLCVRQEGGHYVSFSLRDLSVRVWPAEDLSAGLVEPSDVAIR
ETFDISAVLPVLSSDAEALSLVVELMPTANDNSAANRTSDKLRGELVLWE
KGSANGTVVPNGFVTLPLYLVNDSATQPKHVVLERAVRQSSASFAPLKGD
LPFVGAGAASIVLQLEGAPQHSISKAVRRHKPNLMITLTYTSQQVPHWDG
IVRHDFVCPWCHRNCYRYRTLLCHFQMEHEQMKFQLTSLKSAKPSDGDGA
RSTTAARNETVPFLLRFSVERMDPQPAQSVDPLSSSVPKRMRSSDGTVQL
PEQIIYANPHRYASYVANANNSAGADEKVREAVERVSLRDNALSSDLQSV
ASTELYDNTRRDILSAVQEELSRCCKHCQRPHDFAYKANTEFCSEWCEAI
YTINRDEDGVSLRGNQRYFPLTSFSSCNARKRFDFRQSLGHRKLFHVVTM
TPVKEEHYDEDDPDSEDEVDQSWRGRLAIERAMYLENTTTTETLFMVMWN
KFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRVLH
MHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSVPGSNGRGSRSRRFG
ART*
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mRNA from alignment at tig00000883_pilon:52065..54176-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00000883_pilon:52065..54176- (Gracilaria gracilis GNS1m male)
ATGTCTACGTCGCAGCGCGGCGCTAATCGACGTCCATCACCACCCATCCT
ACCAGCGTTACTTGAGGTCCATCGCCGTGGGAAGCCACCCTTTCTCGTCC
GCAATCTACGTTATGTACACGACGATCGTCAACGAGCGCGCCGTCGACTG
TGGGATATCTCGTGGACCCGTCCTTCATATCGCTCCGCGCCCGGCGCTCG
ACACCTCTTGCTCACAGTTCGCCCCAGTCGCTGCGTGCTGCGCGCAGGCA
TTCGCACAAGATTGTTTAACACTCGCCTGTTTCGCGATGGCGAGTACGTA
CCGTTGACTGCGGCGATGCGACTTTGTTTGTGCGTTAGGCAGGAGGGCGG
TCATTACGTGTCCTTTTCGTTGAGAGACTTGTCTGTTCGCGTTTGGCCGG
CTGAGGATCTCTCCGCCGGATTGGTGGAACCGTCTGACGTCGCAATTAGA
GAAACTTTTGACATCTCTGCCGTTTTGCCGGTGTTGTCGTCTGATGCAGA
GGCTCTTAGTCTTGTTGTGGAGCTCATGCCCACCGCGAATGATAATTCTG
CTGCGAATCGAACTTCCGATAAGCTGCGTGGAGAGCTTGTGCTTTGGGAG
AAGGGGTCTGCCAATGGAACTGTTGTACCGAATGGTTTTGTAACGCTGCC
TTTGTACCTTGTCAATGACAGCGCTACACAACCGAAGCACGTAGTTTTGG
AACGCGCTGTACGGCAGTCGAGCGCGTCGTTTGCTCCGCTGAAGGGTGAT
CTGCCATTTGTTGGAGCGGGTGCTGCGAGCATCGTTTTGCAGTTGGAGGG
AGCCCCACAACATTCCATTTCTAAAGCGGTGCGACGACACAAGCCGAACC
TCATGATCACGCTTACATACACTTCGCAACAGGTACCGCATTGGGATGGC
ATCGTACGACACGATTTTGTTTGTCCTTGGTGTCATAGAAACTGTTACAG
ATATCGAACGCTTCTGTGTCACTTTCAAATGGAGCATGAACAAATGAAGT
TTCAATTGACCAGTCTCAAATCTGCCAAGCCTTCCGACGGCGATGGTGCT
CGTTCCACCACCGCTGCTCGCAACGAGACCGTCCCTTTCCTGCTACGATT
CAGCGTGGAGCGCATGGATCCTCAACCAGCACAATCGGTTGACCCACTTT
CGTCATCGGTACCTAAGAGAATGCGTTCCAGTGATGGCACTGTACAACTA
CCCGAACAAATTATTTATGCCAATCCGCACCGCTATGCTTCGTATGTCGC
TAACGCAAACAACAGCGCCGGCGCCGATGAGAAAGTCAGGGAAGCCGTGG
AACGCGTCTCACTGCGAGACAATGCCTTATCCTCCGACTTGCAATCGGTA
GCTTCTACGGAATTGTATGACAACACGCGTCGCGACATTCTATCAGCAGT
ACAAGAAGAGCTAAGTAGGTGCTGCAAACACTGTCAAAGACCTCACGATT
TTGCGTACAAGGCGAACACCGAGTTTTGTTCAGAGTGGTGTGAGGCGATT
TACACCATCAATCGCGATGAAGATGGAGTGAGTCTTCGCGGGAATCAAAG
ATACTTCCCTCTAACTTCATTCTCGAGCTGCAATGCTAGAAAACGTTTCG
ATTTTCGACAAAGTCTCGGACATCGGAAGCTCTTTCATGTGGTCACCATG
ACGCCCGTGAAGGAGGAGCATTATGACGAAGACGACCCTGATTCGGAAGA
TGAAGTGGATCAGTCCTGGCGTGGTCGTTTAGCTATTGAACGTGCCATGT
ACTTGGAGAACACCACTACAACGGAAACTCTGTTTATGGTAATGTGGAAC
AAGTTTGCGCATGAAAATTTCCCGCTACCGTCGCTTTATGGCGACCGGTT
TACTAGGTATACATTGGAACTTTTTGCAATTGAGAACCGAGCTCATATCA
TTCGACTCAAACTGCGACTTAAGTTTCTTGCGTTCCTCCGCGTTTTGCAT
ATGCATGGTTTGATCGACTCGGTGGCTGTGTTGTCCATCTTCCAGTGCCT
CGATGGGAAAAAGAAGAGACGCGACATTGCGCTTAGTAGTCGACCAGAAA
GAAGTGTACCGGGAAGTAACGGGAGAGGAAGTCGAAGTCGGAGATTTGGA
GCTCGAACATGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:52065..54176-

>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00000883_pilon:52065..54176- (Gracilaria gracilis GNS1m male)
ATGTCTACGTCGCAGCGCGGCGCTAATCGACGTCCATCACCACCCATCCT
ACCAGCGTTACTTGAGGTCCATCGCCGTGGGAAGCCACCCTTTCTCGTCC
GCAATCTACGTTATGTACACGACGATCGTCAACGAGCGCGCCGTCGACTG
TGGGATATCTCGTGGACCCGTCCTTCATATCGCTCCGCGCCCGGCGCTCG
ACACCTCTTGCTCACAGTTCGCCCCAGTCGCTGCGTGCTGCGCGCAGGCA
TTCGCACAAGATTGTTTAACACTCGCCTGTTTCGCGATGGCGAGTACGTA
CCGTTGACTGCGGCGATGCGACTTTGTTTGTGCGTTAGGCAGGAGGGCGG
TCATTACGTGTCCTTTTCGTTGAGAGACTTGTCTGTTCGCGTTTGGCCGG
CTGAGGATCTCTCCGCCGGATTGGTGGAACCGTCTGACGTCGCAATTAGA
GAAACTTTTGACATCTCTGCCGTTTTGCCGGTGTTGTCGTCTGATGCAGA
GGCTCTTAGTCTTGTTGTGGAGCTCATGCCCACCGCGAATGATAATTCTG
CTGCGAATCGAACTTCCGATAAGCTGCGTGGAGAGCTTGTGCTTTGGGAG
AAGGGGTCTGCCAATGGAACTGTTGTACCGAATGGTTTTGTAACGCTGCC
TTTGTACCTTGTCAATGACAGCGCTACACAACCGAAGCACGTAGTTTTGG
AACGCGCTGTACGGCAGTCGAGCGCGTCGTTTGCTCCGCTGAAGGGTGAT
CTGCCATTTGTTGGAGCGGGTGCTGCGAGCATCGTTTTGCAGTTGGAGGG
AGCCCCACAACATTCCATTTCTAAAGCGGTGCGACGACACAAGCCGAACC
TCATGATCACGCTTACATACACTTCGCAACAGGTACCGCATTGGGATGGC
ATCGTACGACACGATTTTGTTTGTCCTTGGTGTCATAGAAACTGTTACAG
ATATCGAACGCTTCTGTGTCACTTTCAAATGGAGCATGAACAAATGAAGT
TTCAATTGACCAGTCTCAAATCTGCCAAGCCTTCCGACGGCGATGGTGCT
CGTTCCACCACCGCTGCTCGCAACGAGACCGTCCCTTTCCTGCTACGATT
CAGCGTGGAGCGCATGGATCCTCAACCAGCACAATCGGTTGACCCACTTT
CGTCATCGGTACCTAAGAGAATGCGTTCCAGTGATGGCACTGTACAACTA
CCCGAACAAATTATTTATGCCAATCCGCACCGCTATGCTTCGTATGTCGC
TAACGCAAACAACAGCGCCGGCGCCGATGAGAAAGTCAGGGAAGCCGTGG
AACGCGTCTCACTGCGAGACAATGCCTTATCCTCCGACTTGCAATCGGTA
GCTTCTACGGAATTGTATGACAACACGCGTCGCGACATTCTATCAGCAGT
ACAAGAAGAGCTAAGTAGGTGCTGCAAACACTGTCAAAGACCTCACGATT
TTGCGTACAAGGCGAACACCGAGTTTTGTTCAGAGTGGTGTGAGGCGATT
TACACCATCAATCGCGATGAAGATGGAGTGAGTCTTCGCGGGAATCAAAG
ATACTTCCCTCTAACTTCATTCTCGAGCTGCAATGCTAGAAAACGTTTCG
ATTTTCGACAAAGTCTCGGACATCGGAAGCTCTTTCATGTGGTCACCATG
ACGCCCGTGAAGGAGGAGCATTATGACGAAGACGACCCTGATTCGGAAGA
TGAAGTGGATCAGTCCTGGCGTGGTCGTTTAGCTATTGAACGTGCCATGT
ACTTGGAGAACACCACTACAACGGAAACTCTGTTTATGGTAATGTGGAAC
AAGTTTGCGCATGAAAATTTCCCGCTACCGTCGCTTTATGGCGACCGGTT
TACTAGGTATACATTGGAACTTTTTGCAATTGAGAACCGAGCTCATATCA
TTCGACTCAAACTGCGACTTAAGTTTCTTGCGTTCCTCCGCGTTTTGCAT
ATGCATGGTTTGATCGACTCGGTGGCTGTGTTGTCCATCTTCCAGTGCCT
CGATGGGAAAAAGAAGAGACGCGACATTGCGCTTAGTAGTCGACCAGAAA
GAAGTGTACCGGGAAGTAACGGGAGAGGAAGTCGAAGTCGGAGATTTGGA
GCTCGAACATGA
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