Ggra9330.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9330.t1
Unique Name	Ggra9330.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:907537..909798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12596T0
PFAMs	PS_pyruv_trans
Max annot lvl	2759\|Eukaryota
Evalue	6.72e-28
EggNOG OGs	2E45X@1\|root,2SB45@2759\|Eukaryota
Description	Polysaccharide pyruvyl transferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9330	Ggra9330	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 907537..909798 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9330.t1.stop1	Ggra9330.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 907537..907539 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9330.t1.CDS1	Ggra9330.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 907537..909798 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9330.t1.exon1	Ggra9330.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 907537..909798 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9330.t1.start1	Ggra9330.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 909796..909798 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9330.t1	Ggra9330.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 907537..909798 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:907537..909798-
coding sequence from alignment at tig00000863_pilon:907537..909798-

mRNA sequence

>Ggra9330.t1 ID=Ggra9330.t1|Name=Ggra9330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp
MSSAHPDADGSANHQASPLTFALLLLVWWGCNNLFAVHAHRLLADHARVP
YLFVDVSLAQVALGLCLGSLFTRLTAADADADSAAAPAPAAKPTRDPHAS
ALLAGAAVLHAAATQLTNASYALIGGTSTLVWKLTEPLFAAALRRIVLGQ
RCRALSLAGVALVLLGALLFSAQELSLRFSPVVLANVLLPLRNVALKRRQ
SAASANNAVAAATASAAARTYVQLSARALPLCVAAALLKRAALGSASLPP
PQPLLLNALLFNAYQLASLALLARMDVLTHSLANTLKRLSGVAVAAVATS
EPLTPLRAVALLLAAVGFPLHVAASRNALRARLPLALLALLLTAAAVLAL
AMALAGASPWLAPAVARTEQAPSSSFVISQAGYYIYTEDTYHSEREALTF
PDTNNGNMVWQYGGYRRLVDFSNSVTCNDTHVNCNRADASMRRRCMVHYR
PAANGFNSKMNLSFSDAYERLEYEHDVILYVGIGMQYAFKDDSSKDDMFD
GQRIENSVHTFRFPHPSLKFLYTMNQLRIPMFMRGDFTLNASRLAGYQYG
VSAGCPSLFINRNLQLGALLEHKYRRIINARGKKRFKIAFNLTGRHRMFK
WMKSIADLHPGSLFYPQGPEDFRVLRNHNVSFEQVRFFGNVDDWMESLSH
MDLSIGPRIHGNMAAIAAGVPAFVVAPDFRVLEMVQRMHIPHTTMYDDGL
EKGMDVGEMLSKAAFDGSAFDANRCQIAKVYREHFARFGLHLSQHVQQLS
QLC*

spliced messenger RNA

>Ggra9330.t1 ID=Ggra9330.t1|Name=Ggra9330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000863_pilon:907537..909798- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCCGCGCACCCCGACGCCGACGGCTCGGCCAATCACCAAGCTTC
ACCGCTCACCTTCGCGCTGCTGCTGCTCGTGTGGTGGGGCTGCAACAACC
TCTTCGCCGTGCACGCGCACCGCCTGCTTGCCGACCATGCGCGCGTGCCG
TACCTGTTCGTCGACGTGTCGCTGGCGCAGGTCGCGCTGGGGCTCTGTCT
CGGCTCGCTCTTCACGCGCCTCACCGCCGCCGACGCCGACGCCGACAGCG
CCGCCGCTCCCGCGCCCGCCGCCAAGCCGACGCGCGACCCGCACGCAAGC
GCGCTGCTGGCGGGCGCGGCCGTGCTGCACGCCGCGGCCACGCAGCTGAC
CAACGCGTCGTACGCGCTCATCGGCGGCACGTCCACGCTGGTGTGGAAGC
TCACGGAGCCGCTGTTCGCCGCCGCGCTGCGCCGCATCGTGCTGGGACAG
CGCTGCCGCGCGCTGTCGCTGGCCGGCGTGGCGCTGGTGCTGCTCGGCGC
GCTGCTGTTCTCGGCGCAAGAGCTGTCGCTACGCTTCTCGCCCGTCGTGC
TCGCCAACGTGCTGCTGCCGCTGCGCAACGTCGCGCTCAAGCGCCGCCAG
AGCGCCGCCTCCGCCAACAACGCCGTCGCCGCCGCCACCGCCTCCGCCGC
CGCGCGCACGTACGTGCAGCTGTCGGCGCGCGCGCTGCCGCTATGCGTGG
CGGCCGCGCTGCTGAAGCGCGCCGCGTTGGGGTCGGCATCATTGCCGCCG
CCGCAGCCGCTGCTGCTCAACGCGCTGCTGTTCAACGCGTACCAGCTGGC
CAGTCTGGCACTGCTGGCGCGCATGGACGTGCTCACGCACTCGCTGGCCA
ACACGCTCAAGCGGCTGTCGGGCGTGGCGGTGGCCGCCGTGGCCACGTCC
GAGCCGCTCACGCCGCTGCGCGCCGTCGCGCTGCTGCTGGCCGCCGTCGG
CTTCCCGCTGCACGTCGCCGCGTCGCGCAACGCTCTGCGCGCCCGCCTGC
CGCTGGCGCTGCTGGCGCTGCTGCTGACGGCCGCTGCCGTGCTGGCGCTG
GCCATGGCGCTGGCGGGCGCCTCGCCGTGGCTGGCGCCGGCTGTTGCGCG
CACGGAACAGGCTCCTTCTTCTTCGTTCGTCATCAGCCAGGCCGGCTACT
ACATCTACACGGAGGATACGTATCATTCGGAGCGCGAGGCGCTCACTTTT
CCAGACACTAACAACGGCAACATGGTGTGGCAGTACGGCGGCTACCGCCG
GCTGGTCGACTTCTCCAACAGCGTCACGTGCAACGACACGCACGTCAACT
GCAACCGCGCCGACGCCTCCATGAGACGGCGCTGCATGGTGCACTACCGG
CCCGCGGCCAACGGCTTCAACTCCAAGATGAATCTCTCGTTCAGTGACGC
GTACGAGCGGCTGGAATACGAGCACGATGTCATTCTCTACGTCGGCATTG
GAATGCAGTACGCGTTCAAAGATGACTCGTCCAAGGACGACATGTTCGAC
GGCCAGCGCATCGAAAACTCCGTGCACACGTTCCGCTTTCCACACCCGTC
GCTCAAGTTCCTGTACACCATGAACCAACTGCGCATTCCAATGTTCATGC
GCGGCGACTTCACTCTCAACGCGTCGCGGCTTGCGGGCTATCAGTACGGC
GTGTCCGCGGGCTGCCCGAGCCTGTTCATCAACCGCAACCTGCAGCTGGG
CGCGCTATTGGAGCACAAATACCGCCGCATCATCAACGCCCGCGGCAAAA
AGCGGTTCAAGATCGCGTTCAACCTCACCGGCCGGCACAGGATGTTCAAG
TGGATGAAGTCCATTGCCGATCTGCACCCCGGCAGCCTGTTTTACCCGCA
GGGCCCGGAGGACTTTCGCGTGCTGCGCAACCACAACGTGTCGTTCGAGC
AAGTGCGCTTCTTTGGCAACGTTGACGACTGGATGGAAAGCCTATCGCAC
ATGGACTTGTCCATCGGGCCGCGCATTCACGGCAACATGGCCGCTATCGC
CGCCGGTGTGCCCGCCTTCGTGGTGGCGCCGGACTTTCGCGTTCTGGAGA
TGGTGCAAAGAATGCACATTCCGCACACCACCATGTACGACGACGGTCTA
GAAAAGGGAATGGACGTGGGGGAGATGCTGTCGAAAGCGGCGTTTGACGG
ATCTGCTTTCGATGCTAACCGCTGCCAGATCGCTAAGGTGTACAGGGAGC
ATTTTGCGCGTTTTGGATTGCATTTGTCGCAACATGTGCAGCAGCTGTCG
CAATTGTGCTGA

protein sequence of Ggra9330.t1

>Ggra9330.t1 ID=Ggra9330.t1|Name=Ggra9330.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MSSAHPDADGSANHQASPLTFALLLLVWWGCNNLFAVHAHRLLADHARVP
YLFVDVSLAQVALGLCLGSLFTRLTAADADADSAAAPAPAAKPTRDPHAS
ALLAGAAVLHAAATQLTNASYALIGGTSTLVWKLTEPLFAAALRRIVLGQ
RCRALSLAGVALVLLGALLFSAQELSLRFSPVVLANVLLPLRNVALKRRQ
SAASANNAVAAATASAAARTYVQLSARALPLCVAAALLKRAALGSASLPP
PQPLLLNALLFNAYQLASLALLARMDVLTHSLANTLKRLSGVAVAAVATS
EPLTPLRAVALLLAAVGFPLHVAASRNALRARLPLALLALLLTAAAVLAL
AMALAGASPWLAPAVARTEQAPSSSFVISQAGYYIYTEDTYHSEREALTF
PDTNNGNMVWQYGGYRRLVDFSNSVTCNDTHVNCNRADASMRRRCMVHYR
PAANGFNSKMNLSFSDAYERLEYEHDVILYVGIGMQYAFKDDSSKDDMFD
GQRIENSVHTFRFPHPSLKFLYTMNQLRIPMFMRGDFTLNASRLAGYQYG
VSAGCPSLFINRNLQLGALLEHKYRRIINARGKKRFKIAFNLTGRHRMFK
WMKSIADLHPGSLFYPQGPEDFRVLRNHNVSFEQVRFFGNVDDWMESLSH
MDLSIGPRIHGNMAAIAAGVPAFVVAPDFRVLEMVQRMHIPHTTMYDDGL
EKGMDVGEMLSKAAFDGSAFDANRCQIAKVYREHFARFGLHLSQHVQQLS
QLC*

mRNA from alignment at tig00000863_pilon:907537..909798-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9330.t1 ID=Ggra9330.t1|Name=Ggra9330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000863_pilon:907537..909798- (Gracilaria gracilis GNS1m male)
ATGAGTTCCGCGCACCCCGACGCCGACGGCTCGGCCAATCACCAAGCTTC
ACCGCTCACCTTCGCGCTGCTGCTGCTCGTGTGGTGGGGCTGCAACAACC
TCTTCGCCGTGCACGCGCACCGCCTGCTTGCCGACCATGCGCGCGTGCCG
TACCTGTTCGTCGACGTGTCGCTGGCGCAGGTCGCGCTGGGGCTCTGTCT
CGGCTCGCTCTTCACGCGCCTCACCGCCGCCGACGCCGACGCCGACAGCG
CCGCCGCTCCCGCGCCCGCCGCCAAGCCGACGCGCGACCCGCACGCAAGC
GCGCTGCTGGCGGGCGCGGCCGTGCTGCACGCCGCGGCCACGCAGCTGAC
CAACGCGTCGTACGCGCTCATCGGCGGCACGTCCACGCTGGTGTGGAAGC
TCACGGAGCCGCTGTTCGCCGCCGCGCTGCGCCGCATCGTGCTGGGACAG
CGCTGCCGCGCGCTGTCGCTGGCCGGCGTGGCGCTGGTGCTGCTCGGCGC
GCTGCTGTTCTCGGCGCAAGAGCTGTCGCTACGCTTCTCGCCCGTCGTGC
TCGCCAACGTGCTGCTGCCGCTGCGCAACGTCGCGCTCAAGCGCCGCCAG
AGCGCCGCCTCCGCCAACAACGCCGTCGCCGCCGCCACCGCCTCCGCCGC
CGCGCGCACGTACGTGCAGCTGTCGGCGCGCGCGCTGCCGCTATGCGTGG
CGGCCGCGCTGCTGAAGCGCGCCGCGTTGGGGTCGGCATCATTGCCGCCG
CCGCAGCCGCTGCTGCTCAACGCGCTGCTGTTCAACGCGTACCAGCTGGC
CAGTCTGGCACTGCTGGCGCGCATGGACGTGCTCACGCACTCGCTGGCCA
ACACGCTCAAGCGGCTGTCGGGCGTGGCGGTGGCCGCCGTGGCCACGTCC
GAGCCGCTCACGCCGCTGCGCGCCGTCGCGCTGCTGCTGGCCGCCGTCGG
CTTCCCGCTGCACGTCGCCGCGTCGCGCAACGCTCTGCGCGCCCGCCTGC
CGCTGGCGCTGCTGGCGCTGCTGCTGACGGCCGCTGCCGTGCTGGCGCTG
GCCATGGCGCTGGCGGGCGCCTCGCCGTGGCTGGCGCCGGCTGTTGCGCG
CACGGAACAGGCTCCTTCTTCTTCGTTCGTCATCAGCCAGGCCGGCTACT
ACATCTACACGGAGGATACGTATCATTCGGAGCGCGAGGCGCTCACTTTT
CCAGACACTAACAACGGCAACATGGTGTGGCAGTACGGCGGCTACCGCCG
GCTGGTCGACTTCTCCAACAGCGTCACGTGCAACGACACGCACGTCAACT
GCAACCGCGCCGACGCCTCCATGAGACGGCGCTGCATGGTGCACTACCGG
CCCGCGGCCAACGGCTTCAACTCCAAGATGAATCTCTCGTTCAGTGACGC
GTACGAGCGGCTGGAATACGAGCACGATGTCATTCTCTACGTCGGCATTG
GAATGCAGTACGCGTTCAAAGATGACTCGTCCAAGGACGACATGTTCGAC
GGCCAGCGCATCGAAAACTCCGTGCACACGTTCCGCTTTCCACACCCGTC
GCTCAAGTTCCTGTACACCATGAACCAACTGCGCATTCCAATGTTCATGC
GCGGCGACTTCACTCTCAACGCGTCGCGGCTTGCGGGCTATCAGTACGGC
GTGTCCGCGGGCTGCCCGAGCCTGTTCATCAACCGCAACCTGCAGCTGGG
CGCGCTATTGGAGCACAAATACCGCCGCATCATCAACGCCCGCGGCAAAA
AGCGGTTCAAGATCGCGTTCAACCTCACCGGCCGGCACAGGATGTTCAAG
TGGATGAAGTCCATTGCCGATCTGCACCCCGGCAGCCTGTTTTACCCGCA
GGGCCCGGAGGACTTTCGCGTGCTGCGCAACCACAACGTGTCGTTCGAGC
AAGTGCGCTTCTTTGGCAACGTTGACGACTGGATGGAAAGCCTATCGCAC
ATGGACTTGTCCATCGGGCCGCGCATTCACGGCAACATGGCCGCTATCGC
CGCCGGTGTGCCCGCCTTCGTGGTGGCGCCGGACTTTCGCGTTCTGGAGA
TGGTGCAAAGAATGCACATTCCGCACACCACCATGTACGACGACGGTCTA
GAAAAGGGAATGGACGTGGGGGAGATGCTGTCGAAAGCGGCGTTTGACGG
ATCTGCTTTCGATGCTAACCGCTGCCAGATCGCTAAGGTGTACAGGGAGC
ATTTTGCGCGTTTTGGATTGCATTTGTCGCAACATGTGCAGCAGCTGTCG
CAATTGTGCTGA

Coding sequence (CDS) from alignment at tig00000863_pilon:907537..909798-

>Ggra9330.t1 ID=Ggra9330.t1|Name=Ggra9330.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2262bp|location=Sequence derived from alignment at tig00000863_pilon:907537..909798- (Gracilaria gracilis GNS1m male)
ATGAGTTCCGCGCACCCCGACGCCGACGGCTCGGCCAATCACCAAGCTTC
ACCGCTCACCTTCGCGCTGCTGCTGCTCGTGTGGTGGGGCTGCAACAACC
TCTTCGCCGTGCACGCGCACCGCCTGCTTGCCGACCATGCGCGCGTGCCG
TACCTGTTCGTCGACGTGTCGCTGGCGCAGGTCGCGCTGGGGCTCTGTCT
CGGCTCGCTCTTCACGCGCCTCACCGCCGCCGACGCCGACGCCGACAGCG
CCGCCGCTCCCGCGCCCGCCGCCAAGCCGACGCGCGACCCGCACGCAAGC
GCGCTGCTGGCGGGCGCGGCCGTGCTGCACGCCGCGGCCACGCAGCTGAC
CAACGCGTCGTACGCGCTCATCGGCGGCACGTCCACGCTGGTGTGGAAGC
TCACGGAGCCGCTGTTCGCCGCCGCGCTGCGCCGCATCGTGCTGGGACAG
CGCTGCCGCGCGCTGTCGCTGGCCGGCGTGGCGCTGGTGCTGCTCGGCGC
GCTGCTGTTCTCGGCGCAAGAGCTGTCGCTACGCTTCTCGCCCGTCGTGC
TCGCCAACGTGCTGCTGCCGCTGCGCAACGTCGCGCTCAAGCGCCGCCAG
AGCGCCGCCTCCGCCAACAACGCCGTCGCCGCCGCCACCGCCTCCGCCGC
CGCGCGCACGTACGTGCAGCTGTCGGCGCGCGCGCTGCCGCTATGCGTGG
CGGCCGCGCTGCTGAAGCGCGCCGCGTTGGGGTCGGCATCATTGCCGCCG
CCGCAGCCGCTGCTGCTCAACGCGCTGCTGTTCAACGCGTACCAGCTGGC
CAGTCTGGCACTGCTGGCGCGCATGGACGTGCTCACGCACTCGCTGGCCA
ACACGCTCAAGCGGCTGTCGGGCGTGGCGGTGGCCGCCGTGGCCACGTCC
GAGCCGCTCACGCCGCTGCGCGCCGTCGCGCTGCTGCTGGCCGCCGTCGG
CTTCCCGCTGCACGTCGCCGCGTCGCGCAACGCTCTGCGCGCCCGCCTGC
CGCTGGCGCTGCTGGCGCTGCTGCTGACGGCCGCTGCCGTGCTGGCGCTG
GCCATGGCGCTGGCGGGCGCCTCGCCGTGGCTGGCGCCGGCTGTTGCGCG
CACGGAACAGGCTCCTTCTTCTTCGTTCGTCATCAGCCAGGCCGGCTACT
ACATCTACACGGAGGATACGTATCATTCGGAGCGCGAGGCGCTCACTTTT
CCAGACACTAACAACGGCAACATGGTGTGGCAGTACGGCGGCTACCGCCG
GCTGGTCGACTTCTCCAACAGCGTCACGTGCAACGACACGCACGTCAACT
GCAACCGCGCCGACGCCTCCATGAGACGGCGCTGCATGGTGCACTACCGG
CCCGCGGCCAACGGCTTCAACTCCAAGATGAATCTCTCGTTCAGTGACGC
GTACGAGCGGCTGGAATACGAGCACGATGTCATTCTCTACGTCGGCATTG
GAATGCAGTACGCGTTCAAAGATGACTCGTCCAAGGACGACATGTTCGAC
GGCCAGCGCATCGAAAACTCCGTGCACACGTTCCGCTTTCCACACCCGTC
GCTCAAGTTCCTGTACACCATGAACCAACTGCGCATTCCAATGTTCATGC
GCGGCGACTTCACTCTCAACGCGTCGCGGCTTGCGGGCTATCAGTACGGC
GTGTCCGCGGGCTGCCCGAGCCTGTTCATCAACCGCAACCTGCAGCTGGG
CGCGCTATTGGAGCACAAATACCGCCGCATCATCAACGCCCGCGGCAAAA
AGCGGTTCAAGATCGCGTTCAACCTCACCGGCCGGCACAGGATGTTCAAG
TGGATGAAGTCCATTGCCGATCTGCACCCCGGCAGCCTGTTTTACCCGCA
GGGCCCGGAGGACTTTCGCGTGCTGCGCAACCACAACGTGTCGTTCGAGC
AAGTGCGCTTCTTTGGCAACGTTGACGACTGGATGGAAAGCCTATCGCAC
ATGGACTTGTCCATCGGGCCGCGCATTCACGGCAACATGGCCGCTATCGC
CGCCGGTGTGCCCGCCTTCGTGGTGGCGCCGGACTTTCGCGTTCTGGAGA
TGGTGCAAAGAATGCACATTCCGCACACCACCATGTACGACGACGGTCTA
GAAAAGGGAATGGACGTGGGGGAGATGCTGTCGAAAGCGGCGTTTGACGG
ATCTGCTTTCGATGCTAACCGCTGCCAGATCGCTAAGGTGTACAGGGAGC
ATTTTGCGCGTTTTGGATTGCATTTGTCGCAACATGTGCAGCAGCTGTCG
CAATTGTGCTGA