Ggra933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra933.t1
Unique NameGgra933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:757000..757815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra933Ggra933Gracilaria gracilis GNS1m malegenetig00000049_pilon 757000..757815 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra933.t1.start1Ggra933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 757000..757002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra933.t1.CDS1Ggra933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 757000..757815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra933.t1.exon1Ggra933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 757000..757815 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra933.t1.stop1Ggra933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 757813..757815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra933.t1Ggra933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 757000..757815 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra933.t1 ID=Ggra933.t1|Name=Ggra933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MGVGAVHEPIVFGQDFSPYFKLGVSRCIHVDEVQDMETLAGDLVEDAHGL
LNRDEGRTATIDYGHVYCISYRHLDDASKEFEGLCMALHAAAEITLARGG
RMFWVWMDKLLRHHTRSSCCWAFYGLLPYAYFPVIAVRSMDEDEGERMWL
LAEERLGYGNMGIFWIDTQAASLRYIAGVSRGPENAIRIYLRYIRTGEAA
EEKTFHAIDKERFERLANTHGIADEEDILVSLKGSKQESSVMNEVSEIWW
HSIVAVESYASLRNREVRGVL*
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spliced messenger RNA

>Ggra933.t1 ID=Ggra933.t1|Name=Ggra933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000049_pilon:757000..757815+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATGGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TAATACTCATGGAATCGCGGATGAGGAGGATATTTTGGTCAGCCTGAAGG
GGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGGTGG
CATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGAAGT
Aaggggcgttctataa
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protein sequence of Ggra933.t1

>Ggra933.t1 ID=Ggra933.t1|Name=Ggra933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MGVGAVHEPIVFGQDFSPYFKLGVSRCIHVDEVQDMETLAGDLVEDAHGL
LNRDEGRTATIDYGHVYCISYRHLDDASKEFEGLCMALHAAAEITLARGG
RMFWVWMDKLLRHHTRSSCCWAFYGLLPYAYFPVIAVRSMDEDEGERMWL
LAEERLGYGNMGIFWIDTQAASLRYIAGVSRGPENAIRIYLRYIRTGEAA
EEKTFHAIDKERFERLANTHGIADEEDILVSLKGSKQESSVMNEVSEIWW
HSIVAVESYASLRNREVRGVL*
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mRNA from alignment at tig00000049_pilon:757000..757815+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra933.t1 ID=Ggra933.t1|Name=Ggra933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000049_pilon:757000..757815+ (Gracilaria gracilis GNS1m male)
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATGGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TAATACTCATGGAATCGCGGATGAGGAGGATATTTTGGTCAGCCTGAAGG
GGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGGTGG
CATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGAAGT
Aaggggcgttctataa
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Coding sequence (CDS) from alignment at tig00000049_pilon:757000..757815+

>Ggra933.t1 ID=Ggra933.t1|Name=Ggra933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000049_pilon:757000..757815+ (Gracilaria gracilis GNS1m male)
ATGGGAGTAGGGGCCGTGCATGAGCCCATCGTGTTTGGGCAGGACTTCAG
CCCATACTTCAAATTGGGTGTTTCGCGATGTATACATGTCGACGAGGTTC
AAGACATGGAAACTCTTGCAGGAGATCTTGTCGAAGACGCTCATGGGCTT
CTCAACAGAGATGAAGGGCGCACTGCCACAATCGACTATGGTCATGTATA
CTGCATTTCGTATCGTCATCTCGATGATGCCTCGAAAGAGTTTGAGGGTC
TGTGTATGGCGCTGCACGCCGCAGCAGAAATCACTTTGGCACGCGGAGGA
CGCATGTTCTGGGTGTGGATGGATAAACTTTTGAGGCATCACACTCGGAG
CTCATGTTGTTGGGCGTTTTACGGCTTGCTCCCCTATGCCTACTTTCCCG
TCATTGCCGTACGTAGCATGGACGAGGATGAGGGCGAAAGGATGTGGCTA
CTGGCCGAAGAACGACTGGGCTACGGTAACATGGGCATTTTCTGGATTGA
TACACAGGCTGCATCTCTGAGATACATCGCAGGGGTCAGCAGAGGGCCAG
AGAATGCGATAAGAATCTACCTGAGATATATCAGAACAGGTGAGGCTGCG
GAAGAGAAAACATTTCACGCGATTGACAAGGAGCGATTTGAAAGATTGGC
TAATACTCATGGAATCGCGGATGAGGAGGATATTTTGGTCAGCCTGAAGG
GGTCGAAGCAAGAGAGCAGTGTGATGAATGAGGTCTCTGAAATTTGGTGG
CATAGTATTGTGGCTGTGGAGTCGTATGCCAGTCTGCGTAACAGGGAAGT
Aaggggcgttctataa
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