Ggra9323.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9323.t1
Unique NameGgra9323.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:772129..773788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9323Ggra9323Gracilaria gracilis GNS1m malegenetig00000863_pilon 772129..773788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1Ggra9323.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 772129..773788 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1.start1Ggra9323.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 772129..772131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1.CDS1Ggra9323.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 772129..773656 +
Ggra9323.t1.CDS2Ggra9323.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 773757..773788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1.exon1Ggra9323.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 772129..773656 +
Ggra9323.t1.exon2Ggra9323.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 773757..773788 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1.intron1Ggra9323.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 773657..773756 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9323.t1.stop1Ggra9323.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 773786..773788 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9323.t1 ID=Ggra9323.t1|Name=Ggra9323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=520bp
MYTLWFVLAFSLLSLVAATSWLHRGYASSASTATLRGRTLISARTFNASE
SRTPRLLQFRAELKRPIILFDQLEENLVRIASYTRNASTLKAAVTLHGHN
LNRSHFEQGAAFVIYVFDWERNCAPVEHVPGINPNDDVLFFVIDAVIGSN
SLLSLQMTVTSGSEVVPHVDIEVGQQLPFSIALPNKLIFDDDASHEATNL
LLHRIIDLVEIDPPEPRMVRRYTFYPASGVKMDLKVSMMVGVSGFSLHRY
ANNEFKWEQFLDARLEGSLEATTKAKVRRSGQLLARQPLLYFDGSVALPF
VGRAQLEGFGKAEWMLDADIDVGTHAKFECSQEMKHIVKLETTTWGVTAR
RPRDYETLLLESASVSFVDQSAKKGFSGFFGIRPAVGLSYEDFSKDFETD
TGAYVGLQAMTSARQPPFRAYNGLGSTLGNCQVCHKIRGSAAVKTLNASL
RLRKGHEAQKEYSLSTPQATERFLGTVCALEDETCGGFAEPCVRCVTDFA
CPQDYECINPQFMGQLARL*
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spliced messenger RNA

>Ggra9323.t1 ID=Ggra9323.t1|Name=Ggra9323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000863_pilon:772129..773788+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACACTTTGGTTTGTTCTGGCCTTCTCCCTTCTCAGTCTCGTCGC
CGCCACTTCCTGGTTGCACCGCGGCTACGCGTCATCAGCATCGACAGCCA
CGCTTCGCGGGCGTACCCTTATTTCTGCGAGGACATTCAACGCTTCCGAA
TCACGTACTCCGCGCTTATTGCAATTCCGAGCCGAGTTGAAGCGGCCAAT
CATTCTTTTCGACCAGTTGGAAGAAAATCTCGTCCGCATTGCGTCCTATA
CCCGCAATGCCTCCACGCTCAAAGCCGCAGTCACGCTGCACGGGCACAAC
CTCAACCGCTCTCACTTTGAACAAGGCGCGGCCTTTGTCATCTACGTTTT
CGACTGGGAACGAAATTGCGCTCCGGTTGAGCATGTGCCCGGTATTAACC
CGAATGATGATGTCCTCTTTTTCGTGATTGACGCAGTTATTGGGTCAAAT
TCTCTCCTTTCTTTGCAGATGACCGTTACCTCTGGATCGGAGGTTGTCCC
GCATGTTGACATCGAAGTCGGTCAGCAGTTACCTTTTTCCATCGCACTTC
CGAACAAGCTGATCTTTGATGACGATGCCTCGCACGAAGCTACAAACTTA
CTTCTCCACCGAATAATTGATCTAGTAGAAATCGATCCACCCGAGCCCAG
AATGGTTAGAAGATATACGTTTTATCCTGCGTCTGGGGTCAAAATGGATC
TGAAAGTCTCCATGATGGTGGGAGTATCTGGATTTAGTCTCCACCGATAC
GCTAATAACGAGTTCAAATGGGAACAGTTTCTCGATGCAAGACTTGAGGG
ATCGCTGGAAGCAACAACGAAAGCGAAAGTTCGACGAAGCGGCCAACTCC
TCGCTCGCCAACCTCTTCTATATTTTGATGGATCTGTCGCACTTCCGTTT
GTTGGTCGTGCCCAACTGGAGGGATTTGGAAAAGCCGAATGGATGCTGGA
CGCAGATATTGATGTTGGCACACACGCAAAATTTGAATGCTCGCAGGAGA
TGAAGCATATTGTGAAGCTGGAAACAACTACATGGGGAGTGACAGCTCGT
CGACCTCGCGATTATGAAACCCTCCTTCTTGAGAGTGCGTCTGTTTCTTT
CGTCGATCAGAGTGCGAAGAAAGGCTTCAGCGGCTTCTTCGGGATACGCC
CTGCCGTTGGGCTTTCGTACGAAGACTTCAGCAAGGATTTCGAAACAGAC
ACTGGTGCATACGTTGGCTTGCAAGCCATGACATCAGCGCGTCAGCCGCC
ATTCCGTGCGTACAACGGGCTCGGTTCTACGCTGGGCAACTGCCAAGTAT
GTCACAAAATAAGAGGTAGTGCGGCAGTCAAAACTCTGAACGCCTCCCTG
CGCCTACGGAAGGGGCACGAGGCGCAGAAGGAGTATTCGTTATCGACGCC
GCAAGCAACGGAAAGATTTTTGGGCACCGTTTGTGCTCTTGAAGATGAGA
CATGTGGAGGTTTTGCAGAGCCATGCGTTCGCTGTGTGACCGACTTTGCA
TGCCCGCAGGACTACGAATGTATCAACCCGCAGTTCATGGGGCAACTGGC
ACGTCTCTAG
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protein sequence of Ggra9323.t1

>Ggra9323.t1 ID=Ggra9323.t1|Name=Ggra9323.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=520bp
MYTLWFVLAFSLLSLVAATSWLHRGYASSASTATLRGRTLISARTFNASE
SRTPRLLQFRAELKRPIILFDQLEENLVRIASYTRNASTLKAAVTLHGHN
LNRSHFEQGAAFVIYVFDWERNCAPVEHVPGINPNDDVLFFVIDAVIGSN
SLLSLQMTVTSGSEVVPHVDIEVGQQLPFSIALPNKLIFDDDASHEATNL
LLHRIIDLVEIDPPEPRMVRRYTFYPASGVKMDLKVSMMVGVSGFSLHRY
ANNEFKWEQFLDARLEGSLEATTKAKVRRSGQLLARQPLLYFDGSVALPF
VGRAQLEGFGKAEWMLDADIDVGTHAKFECSQEMKHIVKLETTTWGVTAR
RPRDYETLLLESASVSFVDQSAKKGFSGFFGIRPAVGLSYEDFSKDFETD
TGAYVGLQAMTSARQPPFRAYNGLGSTLGNCQVCHKIRGSAAVKTLNASL
RLRKGHEAQKEYSLSTPQATERFLGTVCALEDETCGGFAEPCVRCVTDFA
CPQDYECINPQFMGQLARL*
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mRNA from alignment at tig00000863_pilon:772129..773788+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9323.t1 ID=Ggra9323.t1|Name=Ggra9323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1660bp|location=Sequence derived from alignment at tig00000863_pilon:772129..773788+ (Gracilaria gracilis GNS1m male)
ATGTACACACTTTGGTTTGTTCTGGCCTTCTCCCTTCTCAGTCTCGTCGC
CGCCACTTCCTGGTTGCACCGCGGCTACGCGTCATCAGCATCGACAGCCA
CGCTTCGCGGGCGTACCCTTATTTCTGCGAGGACATTCAACGCTTCCGAA
TCACGTACTCCGCGCTTATTGCAATTCCGAGCCGAGTTGAAGCGGCCAAT
CATTCTTTTCGACCAGTTGGAAGAAAATCTCGTCCGCATTGCGTCCTATA
CCCGCAATGCCTCCACGCTCAAAGCCGCAGTCACGCTGCACGGGCACAAC
CTCAACCGCTCTCACTTTGAACAAGGCGCGGCCTTTGTCATCTACGTTTT
CGACTGGGAACGAAATTGCGCTCCGGTTGAGCATGTGCCCGGTATTAACC
CGAATGATGATGTCCTCTTTTTCGTGATTGACGCAGTTATTGGGTCAAAT
TCTCTCCTTTCTTTGCAGATGACCGTTACCTCTGGATCGGAGGTTGTCCC
GCATGTTGACATCGAAGTCGGTCAGCAGTTACCTTTTTCCATCGCACTTC
CGAACAAGCTGATCTTTGATGACGATGCCTCGCACGAAGCTACAAACTTA
CTTCTCCACCGAATAATTGATCTAGTAGAAATCGATCCACCCGAGCCCAG
AATGGTTAGAAGATATACGTTTTATCCTGCGTCTGGGGTCAAAATGGATC
TGAAAGTCTCCATGATGGTGGGAGTATCTGGATTTAGTCTCCACCGATAC
GCTAATAACGAGTTCAAATGGGAACAGTTTCTCGATGCAAGACTTGAGGG
ATCGCTGGAAGCAACAACGAAAGCGAAAGTTCGACGAAGCGGCCAACTCC
TCGCTCGCCAACCTCTTCTATATTTTGATGGATCTGTCGCACTTCCGTTT
GTTGGTCGTGCCCAACTGGAGGGATTTGGAAAAGCCGAATGGATGCTGGA
CGCAGATATTGATGTTGGCACACACGCAAAATTTGAATGCTCGCAGGAGA
TGAAGCATATTGTGAAGCTGGAAACAACTACATGGGGAGTGACAGCTCGT
CGACCTCGCGATTATGAAACCCTCCTTCTTGAGAGTGCGTCTGTTTCTTT
CGTCGATCAGAGTGCGAAGAAAGGCTTCAGCGGCTTCTTCGGGATACGCC
CTGCCGTTGGGCTTTCGTACGAAGACTTCAGCAAGGATTTCGAAACAGAC
ACTGGTGCATACGTTGGCTTGCAAGCCATGACATCAGCGCGTCAGCCGCC
ATTCCGTGCGTACAACGGGCTCGGTTCTACGCTGGGCAACTGCCAAGTAT
GTCACAAAATAAGAGGTAGTGCGGCAGTCAAAACTCTGAACGCCTCCCTG
CGCCTACGGAAGGGGCACGAGGCGCAGAAGGAGTATTCGTTATCGACGCC
GCAAGCAACGGAAAGATTTTTGGGCACCGTTTGTGCTCTTGAAGATGAGA
CATGTGGAGGTTTTGCAGAGCCATGCGTTCGCTGTGTGACCGACTTTGCA
TGCCCGCAGGACTACGAATGTATCAACCGTAAGTGCTTCCTCAGGCGCGA
GGGAGGACAGTCGTGTGGCCCTTGTGCCATTTGCAACACCGGTTTGTGCT
CTTCTGGTTCTGGTATATGCATTCATAGCGCAGTTCATGGGGCAACTGGC
ACGTCTCTAG
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Coding sequence (CDS) from alignment at tig00000863_pilon:772129..773788+

>Ggra9323.t1 ID=Ggra9323.t1|Name=Ggra9323.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00000863_pilon:772129..773788+ (Gracilaria gracilis GNS1m male)
ATGTACACACTTTGGTTTGTTCTGGCCTTCTCCCTTCTCAGTCTCGTCGC
CGCCACTTCCTGGTTGCACCGCGGCTACGCGTCATCAGCATCGACAGCCA
CGCTTCGCGGGCGTACCCTTATTTCTGCGAGGACATTCAACGCTTCCGAA
TCACGTACTCCGCGCTTATTGCAATTCCGAGCCGAGTTGAAGCGGCCAAT
CATTCTTTTCGACCAGTTGGAAGAAAATCTCGTCCGCATTGCGTCCTATA
CCCGCAATGCCTCCACGCTCAAAGCCGCAGTCACGCTGCACGGGCACAAC
CTCAACCGCTCTCACTTTGAACAAGGCGCGGCCTTTGTCATCTACGTTTT
CGACTGGGAACGAAATTGCGCTCCGGTTGAGCATGTGCCCGGTATTAACC
CGAATGATGATGTCCTCTTTTTCGTGATTGACGCAGTTATTGGGTCAAAT
TCTCTCCTTTCTTTGCAGATGACCGTTACCTCTGGATCGGAGGTTGTCCC
GCATGTTGACATCGAAGTCGGTCAGCAGTTACCTTTTTCCATCGCACTTC
CGAACAAGCTGATCTTTGATGACGATGCCTCGCACGAAGCTACAAACTTA
CTTCTCCACCGAATAATTGATCTAGTAGAAATCGATCCACCCGAGCCCAG
AATGGTTAGAAGATATACGTTTTATCCTGCGTCTGGGGTCAAAATGGATC
TGAAAGTCTCCATGATGGTGGGAGTATCTGGATTTAGTCTCCACCGATAC
GCTAATAACGAGTTCAAATGGGAACAGTTTCTCGATGCAAGACTTGAGGG
ATCGCTGGAAGCAACAACGAAAGCGAAAGTTCGACGAAGCGGCCAACTCC
TCGCTCGCCAACCTCTTCTATATTTTGATGGATCTGTCGCACTTCCGTTT
GTTGGTCGTGCCCAACTGGAGGGATTTGGAAAAGCCGAATGGATGCTGGA
CGCAGATATTGATGTTGGCACACACGCAAAATTTGAATGCTCGCAGGAGA
TGAAGCATATTGTGAAGCTGGAAACAACTACATGGGGAGTGACAGCTCGT
CGACCTCGCGATTATGAAACCCTCCTTCTTGAGAGTGCGTCTGTTTCTTT
CGTCGATCAGAGTGCGAAGAAAGGCTTCAGCGGCTTCTTCGGGATACGCC
CTGCCGTTGGGCTTTCGTACGAAGACTTCAGCAAGGATTTCGAAACAGAC
ACTGGTGCATACGTTGGCTTGCAAGCCATGACATCAGCGCGTCAGCCGCC
ATTCCGTGCGTACAACGGGCTCGGTTCTACGCTGGGCAACTGCCAAGTAT
GTCACAAAATAAGAGGTAGTGCGGCAGTCAAAACTCTGAACGCCTCCCTG
CGCCTACGGAAGGGGCACGAGGCGCAGAAGGAGTATTCGTTATCGACGCC
GCAAGCAACGGAAAGATTTTTGGGCACCGTTTGTGCTCTTGAAGATGAGA
CATGTGGAGGTTTTGCAGAGCCATGCGTTCGCTGTGTGACCGACTTTGCA
TGCCCGCAGGACTACGAATGTATCAACCCGCAGTTCATGGGGCAACTGGC
ACGTCTCTAG
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