Ggra932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra932.t1
Unique Name	Ggra932.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:754258..755880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	452471.Aasi_0451
Preferred name	ylqF
PFAMs	MMR_HSR1
Max annot lvl	2\|Bacteria
KEGG ko	ko:K14540
GOs	GO:0003674,GO:0003824,GO:0003924,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022613,GO:0042254,GO:0044085,GO:0071840
Evalue	3.6e-16
EggNOG OGs	COG1161@1\|root,COG1161@2\|Bacteria
Description	GTP binding
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra932	Ggra932	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 754258..755880 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra932.t1.start1	Ggra932.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 754258..754260 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra932.t1.CDS1	Ggra932.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 754258..755880 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra932.t1.exon1	Ggra932.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 754258..755880 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra932.t1.stop1	Ggra932.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 755878..755880 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra932.t1	Ggra932.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 754258..755880 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:754258..755880+
coding sequence from alignment at tig00000049_pilon:754258..755880+

mRNA sequence

>Ggra932.t1 ID=Ggra932.t1|Name=Ggra932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MISSGKGINKSDGHKSESRGDCRGDWEHQQGNTDWVTAEQNPSYMYPEST
SSDLGGKSKDKPSGTDDPSLYVDIAGKIVLPNEECKVQHEVQDPLDRMNP
EEHRTAQEQWSTQHRFAEQQLPALQQYRASQENWAPQGPRVRQERRTTQE
SGIPQEGQTPKEHQTPEAIPYPAHLYPQHAQEHPTTLTGHEYTMDPLPVS
KQPFAQPSSPTAGKIKAQTTLSDNEVATKMPACFMDEPTAAISEPIRVIV
LGNPGVGKSTIQNTLMGEAVFESGISLEGGLTKRIESCAREGWTFVDTPG
LDDIYHRNTAAQELSKAFRGPCWAKIVFVTALEAGRVRAADVCTLATIVT
ALKKAGVEMRDRYALIVNKCEPSLAEKLDNEHYRELRAKVLDPFLLVEKT
RQVRTIRLEVGLRGKGGVLFREEENAQLRQLVDRTPKIYFPAKPEVRLDV
ENFESATQMMDEELNQRPNQAQQSAGAGRYKASETGGRKITHSQSGFGSE
RLGRWKSKLRGIISDMLETPSSSAMGRRNQGDVGYPEVLE*

spliced messenger RNA

>Ggra932.t1 ID=Ggra932.t1|Name=Ggra932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000049_pilon:754258..755880+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCATCGGGAAAGGGTATCAACAAAAGTGATGGTCATAAATCTGA
AAGCCGTGGCGATTGCCGTGGCGACTGGGAGCATCAACAAGGTAACACTG
ATTGGGTCACAGCGGAACAGAATCCTTCCTATATGTATCCCGAAAGCACA
AGTAGTGATCTTGGCGGCAAGAGTAAAGATAAACCTAGCGGAACAGATGA
CCCGTCCCTTTATGTTGATATCGCCGGTAAAATAGTTCTCCCCAATGAAG
AATGCAAGGTTCAACATGAAGTGCAGGATCCTCTAGACCGTATGAATCCA
GAAGAACATCGGACGGCGCAAGAACAGTGGAGCACCCAACATCGCTTTGC
TGAACAACAACTTCCTGCTCTACAACAATACCGAGCTTCGCAAGAAAACT
GGGCCCCGCAAGGACCCAGGGTTCGGCAAGAACGCCGTACGACGCAAGAA
TCGGGAATTCCACAAGAAGGTCAGACTCCGAAAGAACACCAAACACCAGA
AGCCATCCCCTATCCGGCACATCTCTATCCTCAACATGCCCAGGAGCATC
CTACGACATTGACAGGACACGAATATACAATGGACCCTCTGCCGGTCTCG
AAGCAGCCTTTCGCACAACCTTCGTCACCAACGGCAGGTAAGATAAAAGC
CCAAACTACTCTGTCGGACAATGAGGTCGCAACCAAGATGCCCGCTTGCT
TCATGGATGAACCAACTGCAGCAATCAGCGAACCCATAAGAGTGATCGTT
TTGGGGAATCCAGGAGTAGGTAAGTCAACCATCCAAAACACTCTAATGGG
AGAAGCAGTCTTCGAGTCTGGTATCTCTTTGGAAGGAGGTCTTACGAAGC
GCATTGAATCATGTGCAAGAGAAGGTTGGACGTTCGTAGACACGCCTGGT
TTGGATGATATATATCATAGAAATACGGCGGCGCAGGAATTGTCAAAAGC
TTTTCGTGGACCTTGTTGGGCTAAAATCGTGTTTGTCACGGCTTTGGAAG
CGGGTCGTGTTCGTGCAGCTGATGTGTGTACGCTGGCGACCATTGTGACA
GCATTGAAGAAAGCAGGAGTGGAAATGCGTGATCGATATGCGCTGATTGT
GAACAAATGTGAGCCTTCATTGGCTGAGAAGCTTGATAATGAGCACTACC
GTGAACTTCGTGCCAAGGTGTTGGATCCGTTTCTCCTGGTGGAGAAAACA
AGACAAGTAAGAACCATTAGACTTGAAGTGGGTTTGCGTGGAAAGGGTGG
TGTTTTGTTTAGAGAAGAAGAAAACGCTCAGCTACGGCAATTGGTGGATC
GCACGCCAAAGATTTATTTTCCTGCAAAGCCGGAGGTGAGGTTAGACGTT
GAAAACTTTGAAAGTGCGACGCAAATGATGGACGAAGAGTTGAATCAACG
CCCTAATCAAGCCCAACAAAGTGCAGGAGCTGGTAGATACAAAGCTTCTG
AAACTGGAGGCAGAAAGATAACCCATTCGCAGTCTGGTTTCGGGAGCGAG
AGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGGAATTATCTCCGATATGCT
TGAAACTCCAAGTAGTTCAGCAATGGGAAGACGAAATCAAGGCGACGTTG
GATATCCTGAAGTGCTCGAATGA

protein sequence of Ggra932.t1

>Ggra932.t1 ID=Ggra932.t1|Name=Ggra932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MISSGKGINKSDGHKSESRGDCRGDWEHQQGNTDWVTAEQNPSYMYPEST
SSDLGGKSKDKPSGTDDPSLYVDIAGKIVLPNEECKVQHEVQDPLDRMNP
EEHRTAQEQWSTQHRFAEQQLPALQQYRASQENWAPQGPRVRQERRTTQE
SGIPQEGQTPKEHQTPEAIPYPAHLYPQHAQEHPTTLTGHEYTMDPLPVS
KQPFAQPSSPTAGKIKAQTTLSDNEVATKMPACFMDEPTAAISEPIRVIV
LGNPGVGKSTIQNTLMGEAVFESGISLEGGLTKRIESCAREGWTFVDTPG
LDDIYHRNTAAQELSKAFRGPCWAKIVFVTALEAGRVRAADVCTLATIVT
ALKKAGVEMRDRYALIVNKCEPSLAEKLDNEHYRELRAKVLDPFLLVEKT
RQVRTIRLEVGLRGKGGVLFREEENAQLRQLVDRTPKIYFPAKPEVRLDV
ENFESATQMMDEELNQRPNQAQQSAGAGRYKASETGGRKITHSQSGFGSE
RLGRWKSKLRGIISDMLETPSSSAMGRRNQGDVGYPEVLE*

mRNA from alignment at tig00000049_pilon:754258..755880+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra932.t1 ID=Ggra932.t1|Name=Ggra932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000049_pilon:754258..755880+ (Gracilaria gracilis GNS1m male)
ATGATATCATCGGGAAAGGGTATCAACAAAAGTGATGGTCATAAATCTGA
AAGCCGTGGCGATTGCCGTGGCGACTGGGAGCATCAACAAGGTAACACTG
ATTGGGTCACAGCGGAACAGAATCCTTCCTATATGTATCCCGAAAGCACA
AGTAGTGATCTTGGCGGCAAGAGTAAAGATAAACCTAGCGGAACAGATGA
CCCGTCCCTTTATGTTGATATCGCCGGTAAAATAGTTCTCCCCAATGAAG
AATGCAAGGTTCAACATGAAGTGCAGGATCCTCTAGACCGTATGAATCCA
GAAGAACATCGGACGGCGCAAGAACAGTGGAGCACCCAACATCGCTTTGC
TGAACAACAACTTCCTGCTCTACAACAATACCGAGCTTCGCAAGAAAACT
GGGCCCCGCAAGGACCCAGGGTTCGGCAAGAACGCCGTACGACGCAAGAA
TCGGGAATTCCACAAGAAGGTCAGACTCCGAAAGAACACCAAACACCAGA
AGCCATCCCCTATCCGGCACATCTCTATCCTCAACATGCCCAGGAGCATC
CTACGACATTGACAGGACACGAATATACAATGGACCCTCTGCCGGTCTCG
AAGCAGCCTTTCGCACAACCTTCGTCACCAACGGCAGGTAAGATAAAAGC
CCAAACTACTCTGTCGGACAATGAGGTCGCAACCAAGATGCCCGCTTGCT
TCATGGATGAACCAACTGCAGCAATCAGCGAACCCATAAGAGTGATCGTT
TTGGGGAATCCAGGAGTAGGTAAGTCAACCATCCAAAACACTCTAATGGG
AGAAGCAGTCTTCGAGTCTGGTATCTCTTTGGAAGGAGGTCTTACGAAGC
GCATTGAATCATGTGCAAGAGAAGGTTGGACGTTCGTAGACACGCCTGGT
TTGGATGATATATATCATAGAAATACGGCGGCGCAGGAATTGTCAAAAGC
TTTTCGTGGACCTTGTTGGGCTAAAATCGTGTTTGTCACGGCTTTGGAAG
CGGGTCGTGTTCGTGCAGCTGATGTGTGTACGCTGGCGACCATTGTGACA
GCATTGAAGAAAGCAGGAGTGGAAATGCGTGATCGATATGCGCTGATTGT
GAACAAATGTGAGCCTTCATTGGCTGAGAAGCTTGATAATGAGCACTACC
GTGAACTTCGTGCCAAGGTGTTGGATCCGTTTCTCCTGGTGGAGAAAACA
AGACAAGTAAGAACCATTAGACTTGAAGTGGGTTTGCGTGGAAAGGGTGG
TGTTTTGTTTAGAGAAGAAGAAAACGCTCAGCTACGGCAATTGGTGGATC
GCACGCCAAAGATTTATTTTCCTGCAAAGCCGGAGGTGAGGTTAGACGTT
GAAAACTTTGAAAGTGCGACGCAAATGATGGACGAAGAGTTGAATCAACG
CCCTAATCAAGCCCAACAAAGTGCAGGAGCTGGTAGATACAAAGCTTCTG
AAACTGGAGGCAGAAAGATAACCCATTCGCAGTCTGGTTTCGGGAGCGAG
AGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGGAATTATCTCCGATATGCT
TGAAACTCCAAGTAGTTCAGCAATGGGAAGACGAAATCAAGGCGACGTTG
GATATCCTGAAGTGCTCGAATGA

Coding sequence (CDS) from alignment at tig00000049_pilon:754258..755880+

>Ggra932.t1 ID=Ggra932.t1|Name=Ggra932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000049_pilon:754258..755880+ (Gracilaria gracilis GNS1m male)
ATGATATCATCGGGAAAGGGTATCAACAAAAGTGATGGTCATAAATCTGA
AAGCCGTGGCGATTGCCGTGGCGACTGGGAGCATCAACAAGGTAACACTG
ATTGGGTCACAGCGGAACAGAATCCTTCCTATATGTATCCCGAAAGCACA
AGTAGTGATCTTGGCGGCAAGAGTAAAGATAAACCTAGCGGAACAGATGA
CCCGTCCCTTTATGTTGATATCGCCGGTAAAATAGTTCTCCCCAATGAAG
AATGCAAGGTTCAACATGAAGTGCAGGATCCTCTAGACCGTATGAATCCA
GAAGAACATCGGACGGCGCAAGAACAGTGGAGCACCCAACATCGCTTTGC
TGAACAACAACTTCCTGCTCTACAACAATACCGAGCTTCGCAAGAAAACT
GGGCCCCGCAAGGACCCAGGGTTCGGCAAGAACGCCGTACGACGCAAGAA
TCGGGAATTCCACAAGAAGGTCAGACTCCGAAAGAACACCAAACACCAGA
AGCCATCCCCTATCCGGCACATCTCTATCCTCAACATGCCCAGGAGCATC
CTACGACATTGACAGGACACGAATATACAATGGACCCTCTGCCGGTCTCG
AAGCAGCCTTTCGCACAACCTTCGTCACCAACGGCAGGTAAGATAAAAGC
CCAAACTACTCTGTCGGACAATGAGGTCGCAACCAAGATGCCCGCTTGCT
TCATGGATGAACCAACTGCAGCAATCAGCGAACCCATAAGAGTGATCGTT
TTGGGGAATCCAGGAGTAGGTAAGTCAACCATCCAAAACACTCTAATGGG
AGAAGCAGTCTTCGAGTCTGGTATCTCTTTGGAAGGAGGTCTTACGAAGC
GCATTGAATCATGTGCAAGAGAAGGTTGGACGTTCGTAGACACGCCTGGT
TTGGATGATATATATCATAGAAATACGGCGGCGCAGGAATTGTCAAAAGC
TTTTCGTGGACCTTGTTGGGCTAAAATCGTGTTTGTCACGGCTTTGGAAG
CGGGTCGTGTTCGTGCAGCTGATGTGTGTACGCTGGCGACCATTGTGACA
GCATTGAAGAAAGCAGGAGTGGAAATGCGTGATCGATATGCGCTGATTGT
GAACAAATGTGAGCCTTCATTGGCTGAGAAGCTTGATAATGAGCACTACC
GTGAACTTCGTGCCAAGGTGTTGGATCCGTTTCTCCTGGTGGAGAAAACA
AGACAAGTAAGAACCATTAGACTTGAAGTGGGTTTGCGTGGAAAGGGTGG
TGTTTTGTTTAGAGAAGAAGAAAACGCTCAGCTACGGCAATTGGTGGATC
GCACGCCAAAGATTTATTTTCCTGCAAAGCCGGAGGTGAGGTTAGACGTT
GAAAACTTTGAAAGTGCGACGCAAATGATGGACGAAGAGTTGAATCAACG
CCCTAATCAAGCCCAACAAAGTGCAGGAGCTGGTAGATACAAAGCTTCTG
AAACTGGAGGCAGAAAGATAACCCATTCGCAGTCTGGTTTCGGGAGCGAG
AGGTTGGGAAGGTGGAAGAGTAAGCTTCGTGGAATTATCTCCGATATGCT
TGAAACTCCAAGTAGTTCAGCAATGGGAAGACGAAATCAAGGCGACGTTG
GATATCCTGAAGTGCTCGAATGA