Ggra9319.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9319.t1
Unique NameGgra9319.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:635091..635810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1178825.ALIH01000013_gene500
PFAMsAlginate_lyase2
Max annot lvl976|Bacteroidetes
Evalue4.17e-16
EggNOG OGsCOG3291@1|root,COG3291@2|Bacteria,4PI3Y@976|Bacteroidetes,1I8VR@117743|Flavobacteriia
DescriptionAlginate lyase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9319Ggra9319Gracilaria gracilis GNS1m malegenetig00000863_pilon 635091..635810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9319.t1.stop1Ggra9319.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 635091..635093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9319.t1.CDS1Ggra9319.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 635091..635810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9319.t1.exon1Ggra9319.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 635091..635810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9319.t1.start1Ggra9319.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 635808..635810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9319.t1Ggra9319.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 635091..635810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9319.t1 ID=Ggra9319.t1|Name=Ggra9319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MQPLFVLLCAVCSLCLPEVLAYTAPSTKAKFHPVLARAKLQAPDSSTAAS
NLFGYSSSYFHLQGGTYMQFQMKGASKRSELREMKTNGDKAAWSVESSNT
LHAEIALPKPVSDMNEITFLQVHSGASKPALRISWRKSYKENGKTYSDCI
ISNLRDGLGSNDVNKKFLAQRHTGTKSYKIRVKNSKVSVWIGGSRVLNEA
SMAFWKQYPTCYFKAGVYINNPSSNSASARTKFKELDWS*
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spliced messenger RNA

>Ggra9319.t1 ID=Ggra9319.t1|Name=Ggra9319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000863_pilon:635091..635810- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCACTTTTCGTGCTGCTTTGTGCCGTGTGTTCCCTGTGCTTGCC
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAAGCCAAGTTCCACCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTCC
AACCTTTTTGGCTATTCGTCCTCATATTTTCACCTGCAGGGGGGCACGTA
CATGCAGTTCCAGATGAAAGGTGCTTCAAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCGGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGTGTCTGACATGAACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCGGCATTGCGAATCA
GCTGGCGGAAGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCAACCTGAGGGATGGACTTGGAAGTAACGATGTCAACAAGAAGTT
TCTCGCTCAACGTCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCGTTTGGATTGGTGGTTCCCGTGTGCTCAATGAGGCA
AGTATGGCATTCTGGAAGCAGTATCCAACTTGTTACTTCAAGGCTGGTGT
TTATATTAACAACCCCAGCAGCAATAGTGCTTCTGCCCGCACCAAATTCA
AAGAGCTTGATTGGTCTTAG
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protein sequence of Ggra9319.t1

>Ggra9319.t1 ID=Ggra9319.t1|Name=Ggra9319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MQPLFVLLCAVCSLCLPEVLAYTAPSTKAKFHPVLARAKLQAPDSSTAAS
NLFGYSSSYFHLQGGTYMQFQMKGASKRSELREMKTNGDKAAWSVESSNT
LHAEIALPKPVSDMNEITFLQVHSGASKPALRISWRKSYKENGKTYSDCI
ISNLRDGLGSNDVNKKFLAQRHTGTKSYKIRVKNSKVSVWIGGSRVLNEA
SMAFWKQYPTCYFKAGVYINNPSSNSASARTKFKELDWS*
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mRNA from alignment at tig00000863_pilon:635091..635810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9319.t1 ID=Ggra9319.t1|Name=Ggra9319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000863_pilon:635091..635810- (Gracilaria gracilis GNS1m male)
ATGCAACCACTTTTCGTGCTGCTTTGTGCCGTGTGTTCCCTGTGCTTGCC
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAAGCCAAGTTCCACCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTCC
AACCTTTTTGGCTATTCGTCCTCATATTTTCACCTGCAGGGGGGCACGTA
CATGCAGTTCCAGATGAAAGGTGCTTCAAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCGGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGTGTCTGACATGAACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCGGCATTGCGAATCA
GCTGGCGGAAGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCAACCTGAGGGATGGACTTGGAAGTAACGATGTCAACAAGAAGTT
TCTCGCTCAACGTCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCGTTTGGATTGGTGGTTCCCGTGTGCTCAATGAGGCA
AGTATGGCATTCTGGAAGCAGTATCCAACTTGTTACTTCAAGGCTGGTGT
TTATATTAACAACCCCAGCAGCAATAGTGCTTCTGCCCGCACCAAATTCA
AAGAGCTTGATTGGTCTTAG
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Coding sequence (CDS) from alignment at tig00000863_pilon:635091..635810-

>Ggra9319.t1 ID=Ggra9319.t1|Name=Ggra9319.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000863_pilon:635091..635810- (Gracilaria gracilis GNS1m male)
ATGCAACCACTTTTCGTGCTGCTTTGTGCCGTGTGTTCCCTGTGCTTGCC
TGAGGTTCTGGCCTATACGGCGCCGTCCACCAAAGCCAAGTTCCACCCGG
TGCTGGCAAGAGCAAAGCTGCAAGCCCCGGATTCAAGCACTGCCGCCTCC
AACCTTTTTGGCTATTCGTCCTCATATTTTCACCTGCAGGGGGGCACGTA
CATGCAGTTCCAGATGAAAGGTGCTTCAAAGCGCTCCGAGCTCCGTGAAA
TGAAGACCAACGGTGACAAGGCGGCTTGGTCTGTCGAGTCGTCCAATACG
CTTCACGCCGAAATCGCGTTGCCAAAGCCTGTGTCTGACATGAACGAGAT
TACCTTTCTGCAAGTGCATTCTGGTGCTTCTAAGCCGGCATTGCGAATCA
GCTGGCGGAAGAGCTACAAAGAGAACGGGAAGACCTACTCGGATTGCATT
ATCTCCAACCTGAGGGATGGACTTGGAAGTAACGATGTCAACAAGAAGTT
TCTCGCTCAACGTCACACGGGTACCAAGAGCTACAAGATTCGGGTAAAAA
ATAGCAAAGTGAGCGTTTGGATTGGTGGTTCCCGTGTGCTCAATGAGGCA
AGTATGGCATTCTGGAAGCAGTATCCAACTTGTTACTTCAAGGCTGGTGT
TTATATTAACAACCCCAGCAGCAATAGTGCTTCTGCCCGCACCAAATTCA
AAGAGCTTGATTGGTCTTAG
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