Ggra9316.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9316.t1
Unique NameGgra9316.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:603309..604199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9316Ggra9316Gracilaria gracilis GNS1m malegenetig00000863_pilon 603309..604199 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9316.t1.stop1Ggra9316.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 603309..603311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9316.t1.CDS1Ggra9316.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 603309..604199 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9316.t1.exon1Ggra9316.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 603309..604199 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9316.t1.start1Ggra9316.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 604197..604199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9316.t1Ggra9316.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 603309..604199 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9316.t1 ID=Ggra9316.t1|Name=Ggra9316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MPSQNEIPHVGATSTALDAENSSERRGLLPIAGSLYEASSHPVPMQKPSP
PQPMAFPHSYATAHCSGAPHTHSGHLHAVPPPMPVVYQAPASGGTAAAAD
FGASAVRLLVRVTMLMIVVLPVSIFALYCTQTGRSNDPVKDLKRFAHKEA
VKNKVEHIDDLSVSGLKLYAQATCVKGPTVTEVREALRAQLYEIQRTARD
RIVASAVIRGIDAVGTGQDTSSDIEGSGTAFSYLAYWNTKYNGGEVLLSD
RYSTCAMVAGVNVKAEEDIAGYETTTSKVKIGTKPCKCSMLWCVGR*
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spliced messenger RNA

>Ggra9316.t1 ID=Ggra9316.t1|Name=Ggra9316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000863_pilon:603309..604199- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCTCAGAACGAAATACCCCATGTGGGGGCGACTTCAACCGCGCT
CGACGCTGAGAACTCTTCGGAGCGGCGGGGTTTACTGCCCATCGCCGGCA
GCTTGTACGAGGCGTCATCGCACCCTGTCCCAATGCAGAAGCCGTCTCCA
CCACAGCCAATGGCTTTCCCACATTCCTATGCTACCGCTCATTGCAGCGG
CGCCCCACACACGCATTCGGGACATCTTCACGCCGTGCCCCCTCCAATGC
CCGTTGTGTACCAAGCGCCTGCCTCGGGCGGAACGGCAGCTGCAGCGGAC
TTCGGCGCGTCGGCCGTTCGTTTGCTTGTGAGAGTCACAATGCTCATGAT
CGTTGTGCTGCCGGTGAGTATTTTTGCGTTATATTGCACACAAACGGGTC
GATCAAATGATCCTGTGAAAGATCTAAAACGGTTTGCTCACAAGGAAGCG
GTCAAGAACAAAGTGGAACACATTGACGATCTCTCCGTTAGCGGCCTGAA
GCTCTATGCACAGGCTACATGTGTGAAGGGCCCTACAGTGACGGAGGTTA
GAGAGGCCCTCCGCGCTCAGCTCTATGAAATACAGCGCACCGCTCGTGAC
CGTATCGTCGCAAGTGCCGTCATTAGAGGAATCGATGCTGTGGGTACGGG
ACAGGATACGTCCTCCGATATAGAAGGCTCTGGCACCGCGTTCAGTTACT
TGGCCTATTGGAACACCAAATACAACGGCGGTGAAGTTTTGCTTTCTGAT
AGATACTCTACTTGTGCCATGGTCGCTGGCGTGAACGTGAAGGCCGAGGA
AGACATTGCGGGATACGAAACTACCACTTCCAAAGTTAAAATCGGGACCA
AACCGTGCAAGTGTAGCATGTTGTGGTGCGTTGGTCGTTGA
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protein sequence of Ggra9316.t1

>Ggra9316.t1 ID=Ggra9316.t1|Name=Ggra9316.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MPSQNEIPHVGATSTALDAENSSERRGLLPIAGSLYEASSHPVPMQKPSP
PQPMAFPHSYATAHCSGAPHTHSGHLHAVPPPMPVVYQAPASGGTAAAAD
FGASAVRLLVRVTMLMIVVLPVSIFALYCTQTGRSNDPVKDLKRFAHKEA
VKNKVEHIDDLSVSGLKLYAQATCVKGPTVTEVREALRAQLYEIQRTARD
RIVASAVIRGIDAVGTGQDTSSDIEGSGTAFSYLAYWNTKYNGGEVLLSD
RYSTCAMVAGVNVKAEEDIAGYETTTSKVKIGTKPCKCSMLWCVGR*
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mRNA from alignment at tig00000863_pilon:603309..604199-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9316.t1 ID=Ggra9316.t1|Name=Ggra9316.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000863_pilon:603309..604199- (Gracilaria gracilis GNS1m male)
ATGCCTTCTCAGAACGAAATACCCCATGTGGGGGCGACTTCAACCGCGCT
CGACGCTGAGAACTCTTCGGAGCGGCGGGGTTTACTGCCCATCGCCGGCA
GCTTGTACGAGGCGTCATCGCACCCTGTCCCAATGCAGAAGCCGTCTCCA
CCACAGCCAATGGCTTTCCCACATTCCTATGCTACCGCTCATTGCAGCGG
CGCCCCACACACGCATTCGGGACATCTTCACGCCGTGCCCCCTCCAATGC
CCGTTGTGTACCAAGCGCCTGCCTCGGGCGGAACGGCAGCTGCAGCGGAC
TTCGGCGCGTCGGCCGTTCGTTTGCTTGTGAGAGTCACAATGCTCATGAT
CGTTGTGCTGCCGGTGAGTATTTTTGCGTTATATTGCACACAAACGGGTC
GATCAAATGATCCTGTGAAAGATCTAAAACGGTTTGCTCACAAGGAAGCG
GTCAAGAACAAAGTGGAACACATTGACGATCTCTCCGTTAGCGGCCTGAA
GCTCTATGCACAGGCTACATGTGTGAAGGGCCCTACAGTGACGGAGGTTA
GAGAGGCCCTCCGCGCTCAGCTCTATGAAATACAGCGCACCGCTCGTGAC
CGTATCGTCGCAAGTGCCGTCATTAGAGGAATCGATGCTGTGGGTACGGG
ACAGGATACGTCCTCCGATATAGAAGGCTCTGGCACCGCGTTCAGTTACT
TGGCCTATTGGAACACCAAATACAACGGCGGTGAAGTTTTGCTTTCTGAT
AGATACTCTACTTGTGCCATGGTCGCTGGCGTGAACGTGAAGGCCGAGGA
AGACATTGCGGGATACGAAACTACCACTTCCAAAGTTAAAATCGGGACCA
AACCGTGCAAGTGTAGCATGTTGTGGTGCGTTGGTCGTTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:603309..604199-

>Ggra9316.t1 ID=Ggra9316.t1|Name=Ggra9316.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000863_pilon:603309..604199- (Gracilaria gracilis GNS1m male)
ATGCCTTCTCAGAACGAAATACCCCATGTGGGGGCGACTTCAACCGCGCT
CGACGCTGAGAACTCTTCGGAGCGGCGGGGTTTACTGCCCATCGCCGGCA
GCTTGTACGAGGCGTCATCGCACCCTGTCCCAATGCAGAAGCCGTCTCCA
CCACAGCCAATGGCTTTCCCACATTCCTATGCTACCGCTCATTGCAGCGG
CGCCCCACACACGCATTCGGGACATCTTCACGCCGTGCCCCCTCCAATGC
CCGTTGTGTACCAAGCGCCTGCCTCGGGCGGAACGGCAGCTGCAGCGGAC
TTCGGCGCGTCGGCCGTTCGTTTGCTTGTGAGAGTCACAATGCTCATGAT
CGTTGTGCTGCCGGTGAGTATTTTTGCGTTATATTGCACACAAACGGGTC
GATCAAATGATCCTGTGAAAGATCTAAAACGGTTTGCTCACAAGGAAGCG
GTCAAGAACAAAGTGGAACACATTGACGATCTCTCCGTTAGCGGCCTGAA
GCTCTATGCACAGGCTACATGTGTGAAGGGCCCTACAGTGACGGAGGTTA
GAGAGGCCCTCCGCGCTCAGCTCTATGAAATACAGCGCACCGCTCGTGAC
CGTATCGTCGCAAGTGCCGTCATTAGAGGAATCGATGCTGTGGGTACGGG
ACAGGATACGTCCTCCGATATAGAAGGCTCTGGCACCGCGTTCAGTTACT
TGGCCTATTGGAACACCAAATACAACGGCGGTGAAGTTTTGCTTTCTGAT
AGATACTCTACTTGTGCCATGGTCGCTGGCGTGAACGTGAAGGCCGAGGA
AGACATTGCGGGATACGAAACTACCACTTCCAAAGTTAAAATCGGGACCA
AACCGTGCAAGTGTAGCATGTTGTGGTGCGTTGGTCGTTGA
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