Ggra9312.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9312.t1
Unique NameGgra9312.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:504854..505686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9312Ggra9312Gracilaria gracilis GNS1m malegenetig00000863_pilon 504854..505686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1Ggra9312.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 504854..505686 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1.start1Ggra9312.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 504854..504856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1.CDS1Ggra9312.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 504854..504866 +
Ggra9312.t1.CDS2Ggra9312.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 505133..505686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1.exon1Ggra9312.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 504854..504866 +
Ggra9312.t1.exon2Ggra9312.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 505133..505686 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1.intron1Ggra9312.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 504867..505132 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9312.t1.stop1Ggra9312.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 505684..505686 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9312.t1 ID=Ggra9312.t1|Name=Ggra9312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MNSDEPSPLPIATPDLLREDLLPCDDLGQLPVPSDLAPSFEEPFPSELPL
FEIITCTSGGGCFLDFGREFNCRNSHIDILPDDETAVLLLSEFDEQGASQ
ITFRARVLDSSITSDDPDEPVPSIPWVSTQDDIEQTICEEAPVPTVTIVP
SGFIVLEFGGPFGTCCRACSFLSSSRTVPPSFSCCFAC*
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spliced messenger RNA

>Ggra9312.t1 ID=Ggra9312.t1|Name=Ggra9312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000863_pilon:504854..505686+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTGATGAGCCGTCTCCGCTGCCGATCGCCACACCTGATCTACT
GCGTGAAGATTTGTTGCCGTGCGATGACCTAGGACAGCTCCCTGTTCCAT
CCGATTTAGCTCCATCTTTTGAAGAACCGTTTCCATCGGAGCTCCCGCTC
TTCGAGATAATCACATGCACATCCGGTGGAGGCTGCTTCCTGGATTTTGG
ACGCGAATTCAATTGCCGTAATTCACATATCGACATCCTGCCGGATGACG
AAACGGCCGTGCTGCTGCTCTCCGAGTTTGATGAACAAGGTGCTTCTCAG
ATCACATTCCGAGCGAGAGTTCTGGACTCATCCATCACATCTGACGACCC
CGACGAGCCTGTGCCCTCAATTCCATGGGTTTCAACACAAGACGACATTG
AGCAAACCATCTGTGAGGAAGCCCCTGTTCCCACGGTTACTATCGTACCT
AGTGGATTCATCGTGTTGGAATTTGGGGGGCCTTTTGGTACTTGTTGTAG
GGCTTGCTCGTTCTTGAGCTCGAGTCGTACTGTGCCGCCTTCGTTTTCTT
GTTGCTTTGCGTGCTGA
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protein sequence of Ggra9312.t1

>Ggra9312.t1 ID=Ggra9312.t1|Name=Ggra9312.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MNSDEPSPLPIATPDLLREDLLPCDDLGQLPVPSDLAPSFEEPFPSELPL
FEIITCTSGGGCFLDFGREFNCRNSHIDILPDDETAVLLLSEFDEQGASQ
ITFRARVLDSSITSDDPDEPVPSIPWVSTQDDIEQTICEEAPVPTVTIVP
SGFIVLEFGGPFGTCCRACSFLSSSRTVPPSFSCCFAC*
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mRNA from alignment at tig00000863_pilon:504854..505686+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9312.t1 ID=Ggra9312.t1|Name=Ggra9312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=833bp|location=Sequence derived from alignment at tig00000863_pilon:504854..505686+ (Gracilaria gracilis GNS1m male)
ATGAATTCTGATGGTATGTCTTATACACTCTCCCATGACCTTGTTGCTGT
CAGGTATTTGCCACACACTAGGCATACAAAACAGCTGGAAGTTCGCAATT
CTCGATCACAATTCTCGATAAGAAGGTTGTGCCATCGCAACCCACCCCGC
GATCGCCGCGTCAGTGCTCGTGTGCCATACCGACTCTCGCAATGAAGCTA
CAGCTAATGCCCTTCGTGATCTTTGCCCTGCTTGCGTATTTACCTTCCGC
CCCAAATTCTCTCTCATTCGCCGCCCCAGAGCCGTCTCCGCTGCCGATCG
CCACACCTGATCTACTGCGTGAAGATTTGTTGCCGTGCGATGACCTAGGA
CAGCTCCCTGTTCCATCCGATTTAGCTCCATCTTTTGAAGAACCGTTTCC
ATCGGAGCTCCCGCTCTTCGAGATAATCACATGCACATCCGGTGGAGGCT
GCTTCCTGGATTTTGGACGCGAATTCAATTGCCGTAATTCACATATCGAC
ATCCTGCCGGATGACGAAACGGCCGTGCTGCTGCTCTCCGAGTTTGATGA
ACAAGGTGCTTCTCAGATCACATTCCGAGCGAGAGTTCTGGACTCATCCA
TCACATCTGACGACCCCGACGAGCCTGTGCCCTCAATTCCATGGGTTTCA
ACACAAGACGACATTGAGCAAACCATCTGTGAGGAAGCCCCTGTTCCCAC
GGTTACTATCGTACCTAGTGGATTCATCGTGTTGGAATTTGGGGGGCCTT
TTGGTACTTGTTGTAGGGCTTGCTCGTTCTTGAGCTCGAGTCGTACTGTG
CCGCCTTCGTTTTCTTGTTGCTTTGCGTGCTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:504854..505686+

>Ggra9312.t1 ID=Ggra9312.t1|Name=Ggra9312.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000863_pilon:504854..505686+ (Gracilaria gracilis GNS1m male)
ATGAATTCTGATGAGCCGTCTCCGCTGCCGATCGCCACACCTGATCTACT
GCGTGAAGATTTGTTGCCGTGCGATGACCTAGGACAGCTCCCTGTTCCAT
CCGATTTAGCTCCATCTTTTGAAGAACCGTTTCCATCGGAGCTCCCGCTC
TTCGAGATAATCACATGCACATCCGGTGGAGGCTGCTTCCTGGATTTTGG
ACGCGAATTCAATTGCCGTAATTCACATATCGACATCCTGCCGGATGACG
AAACGGCCGTGCTGCTGCTCTCCGAGTTTGATGAACAAGGTGCTTCTCAG
ATCACATTCCGAGCGAGAGTTCTGGACTCATCCATCACATCTGACGACCC
CGACGAGCCTGTGCCCTCAATTCCATGGGTTTCAACACAAGACGACATTG
AGCAAACCATCTGTGAGGAAGCCCCTGTTCCCACGGTTACTATCGTACCT
AGTGGATTCATCGTGTTGGAATTTGGGGGGCCTTTTGGTACTTGTTGTAG
GGCTTGCTCGTTCTTGAGCTCGAGTCGTACTGTGCCGCCTTCGTTTTCTT
GTTGCTTTGCGTGCTGA
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