Ggra9310.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9310.t1
Unique NameGgra9310.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:495140..496429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9310Ggra9310Gracilaria gracilis GNS1m malegenetig00000863_pilon 495140..496429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1Ggra9310.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 495140..496429 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1.stop1Ggra9310.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 495140..495142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1.CDS1Ggra9310.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 495140..495306 -
Ggra9310.t1.CDS2Ggra9310.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 495505..496429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1.exon1Ggra9310.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 495140..495306 -
Ggra9310.t1.exon2Ggra9310.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 495505..496429 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1.intron1Ggra9310.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 495307..495504 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1.start1Ggra9310.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 496427..496429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MESVANPCHSQYQSILGGRGNTASSAQVTSGVIRNVNTAPLFRRFGSLVV
LAVIVSVLAFVAGRAGIIDRHNGFRSSRLYPALAQKLHDARHFYSIDRPG
GGPTLSNYHSMSRPLNPSYASRVDLYSSRFDAFVQSDASSTVEDFALDER
VPTGQCSKRRLCRARLTLVKEGSQVVIKAGYYIYIKDGSVRTVSEETKSK
LKKTTPTQARKWASTLLEGASARLAEVKCTVTVDEIAKAIMDGKNTVLSC
PKTGDSRCDALETIRECTLPEPREVDPCAEFVKSSSGVDSLAALQVECPT
AQFYYNRVDEGIFIIDVASSDQGNAPKEVLDVAESYGCAFTYAFFVGAGN
SVESIVDASCAAQ*
back to top

spliced messenger RNA

>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000863_pilon:495140..496429- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCGTCGCAAACCCTTGTCATTCTCAATACCAGTCCATCCTGGG
CGGTCGCGGCAATACCGCTTCTTCAGCCCAAGTTACCAGCGGAGTGATCC
GAAATGTTAACACTGCTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGTA
CTGGCTGTAATCGTGTCAGTATTGGCATTTGTCGCCGGAAGAGCAGGAAT
CATCGATCGTCACAATGGCTTTCGTTCATCTCGCCTATATCCTGCGCTCG
CGCAAAAGCTGCATGATGCTCGACACTTTTATTCCATTGACCGTCCTGGC
GGTGGACCAACATTGAGCAACTATCATTCAATGTCTCGACCTTTGAACCC
AAGCTATGCCTCCCGTGTCGATCTCTACAGCTCCCGTTTTGATGCATTTG
TTCAGAGCGACGCTTCTTCGACAGTAGAAGACTTTGCTTTAGATGAAAGG
GTCCCCACGGGACAGTGCAGCAAACGAAGACTCTGCAGAGCACGATTGAC
TCTGGTCAAGGAGGGGTCTCAAGTGGTGATCAAGGCGGGTTACTACATCT
ACATCAAAGATGGAAGCGTTCGCACTGTTAGCGAAGAAACCAAATCGAAG
CTGAAGAAGACTACGCCCACCCAAGCTCGGAAGTGGGCTAGTACGCTTCT
TGAAGGCGCCAGCGCTCGACTGGCTGAGGTTAAGTGCACTGTCACTGTGG
ATGAGATAGCGAAAGCAATCATGGATGGCAAGAATACCGTGCTCAGCTGT
CCGAAAACGGGTGACTCTCGTTGCGATGCACTAGAGACGATCCGCGAATG
CACCCTTCCAGAGCCGAGGGAAGTGGACCCATGCGCGGAGTTTGTTAAAT
CTTCTTCAGGTGTGGACAGCTTGGCGGCACTGCAAGTTGAATGTCCGACG
GCCCAGTTTTATTACAACAGAGTTGACGAGGGGATATTCATAATTGATGT
TGCGAGTAGTGATCAAGGAAATGCTCCCAAGGAAGTGCTGGATGTTGCTG
AATCGTACGGTTGCGCATTCACTTACGCTTTCTTCGTCGGTGCAGGAAAT
TCGGTCGAGAGTATTGTTGATGCTAGCTGTGCGGCTCAGTAG
back to top

protein sequence of Ggra9310.t1

>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MESVANPCHSQYQSILGGRGNTASSAQVTSGVIRNVNTAPLFRRFGSLVV
LAVIVSVLAFVAGRAGIIDRHNGFRSSRLYPALAQKLHDARHFYSIDRPG
GGPTLSNYHSMSRPLNPSYASRVDLYSSRFDAFVQSDASSTVEDFALDER
VPTGQCSKRRLCRARLTLVKEGSQVVIKAGYYIYIKDGSVRTVSEETKSK
LKKTTPTQARKWASTLLEGASARLAEVKCTVTVDEIAKAIMDGKNTVLSC
PKTGDSRCDALETIRECTLPEPREVDPCAEFVKSSSGVDSLAALQVECPT
AQFYYNRVDEGIFIIDVASSDQGNAPKEVLDVAESYGCAFTYAFFVGAGN
SVESIVDASCAAQ*
back to top

mRNA from alignment at tig00000863_pilon:495140..496429-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000863_pilon:495140..496429- (Gracilaria gracilis GNS1m male)
ATGGAGTCCGTCGCAAACCCTTGTCATTCTCAATACCAGTCCATCCTGGG
CGGTCGCGGCAATACCGCTTCTTCAGCCCAAGTTACCAGCGGAGTGATCC
GAAATGTTAACACTGCTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGTA
CTGGCTGTAATCGTGTCAGTATTGGCATTTGTCGCCGGAAGAGCAGGAAT
CATCGATCGTCACAATGGCTTTCGTTCATCTCGCCTATATCCTGCGCTCG
CGCAAAAGCTGCATGATGCTCGACACTTTTATTCCATTGACCGTCCTGGC
GGTGGACCAACATTGAGCAACTATCATTCAATGTCTCGACCTTTGAACCC
AAGCTATGCCTCCCGTGTCGATCTCTACAGCTCCCGTTTTGATGCATTTG
TTCAGAGCGACGCTTCTTCGACAGTAGAAGACTTTGCTTTAGATGAAAGG
GTCCCCACGGGACAGTGCAGCAAACGAAGACTCTGCAGAGCACGATTGAC
TCTGGTCAAGGAGGGGTCTCAAGTGGTGATCAAGGCGGGTTACTACATCT
ACATCAAAGATGGAAGCGTTCGCACTGTTAGCGAAGAAACCAAATCGAAG
CTGAAGAAGACTACGCCCACCCAAGCTCGGAAGTGGGCTAGTACGCTTCT
TGAAGGCGCCAGCGCTCGACTGGCTGAGGTTAAGTGCACTGTCACTGTGG
ATGAGATAGCGAAAGCAATCATGGATGGCAAGAATACCGTGCTCAGCTGT
CCGAAAACGGGTGACTCTCGTTGCGATGCACTAGAGACGATCCGCGAATG
CACCCTTCCAGAGCCGAGGGAAGTGGACCCATGCGCGGAGTTTGTTAAAT
CTTCTTCAGGTGTGGACAGCTTGGCGGCACTGCAAGTTGAATGTCCGACG
GCCCAGTTTTATTACAACAGAGTTGGTGTTTCTCTTCCTTTTTGCACAAC
TGAGTGCAGTTCCAATGCAGGTGTGACTCACACTGTGTATATGGATTTCT
ACATACAGTCAAACAACCGAGCGGATAACAAAGCGGACTGCGTTTCTGCA
ACTCTCATTCCGGCGTACCAGAATTATGGGCAGAAACTTCCGGCATGTGA
TTCTACACCGCCTGGAGAGACAGACGAGGGGATATTCATAATTGATGTTG
CGAGTAGTGATCAAGGAAATGCTCCCAAGGAAGTGCTGGATGTTGCTGAA
TCGTACGGTTGCGCATTCACTTACGCTTTCTTCGTCGGTGCAGGAAATTC
GGTCGAGAGTATTGTTGATGCTAGCTGTGCGGCTCAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000863_pilon:495140..496429-

>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000863_pilon:495140..496429- (Gracilaria gracilis GNS1m male)
ATGGAGTCCGTCGCAAACCCTTGTCATTCTCAATACCAGTCCATCCTGGG
CGGTCGCGGCAATACCGCTTCTTCAGCCCAAGTTACCAGCGGAGTGATCC
GAAATGTTAACACTGCTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGTA
CTGGCTGTAATCGTGTCAGTATTGGCATTTGTCGCCGGAAGAGCAGGAAT
CATCGATCGTCACAATGGCTTTCGTTCATCTCGCCTATATCCTGCGCTCG
CGCAAAAGCTGCATGATGCTCGACACTTTTATTCCATTGACCGTCCTGGC
GGTGGACCAACATTGAGCAACTATCATTCAATGTCTCGACCTTTGAACCC
AAGCTATGCCTCCCGTGTCGATCTCTACAGCTCCCGTTTTGATGCATTTG
TTCAGAGCGACGCTTCTTCGACAGTAGAAGACTTTGCTTTAGATGAAAGG
GTCCCCACGGGACAGTGCAGCAAACGAAGACTCTGCAGAGCACGATTGAC
TCTGGTCAAGGAGGGGTCTCAAGTGGTGATCAAGGCGGGTTACTACATCT
ACATCAAAGATGGAAGCGTTCGCACTGTTAGCGAAGAAACCAAATCGAAG
CTGAAGAAGACTACGCCCACCCAAGCTCGGAAGTGGGCTAGTACGCTTCT
TGAAGGCGCCAGCGCTCGACTGGCTGAGGTTAAGTGCACTGTCACTGTGG
ATGAGATAGCGAAAGCAATCATGGATGGCAAGAATACCGTGCTCAGCTGT
CCGAAAACGGGTGACTCTCGTTGCGATGCACTAGAGACGATCCGCGAATG
CACCCTTCCAGAGCCGAGGGAAGTGGACCCATGCGCGGAGTTTGTTAAAT
CTTCTTCAGGTGTGGACAGCTTGGCGGCACTGCAAGTTGAATGTCCGACG
GCCCAGTTTTATTACAACAGAGTTGACGAGGGGATATTCATAATTGATGT
TGCGAGTAGTGATCAAGGAAATGCTCCCAAGGAAGTGCTGGATGTTGCTG
AATCGTACGGTTGCGCATTCACTTACGCTTTCTTCGTCGGTGCAGGAAAT
TCGGTCGAGAGTATTGTTGATGCTAGCTGTGCGGCTCAGTAG
back to top