Ggra9307.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9307.t1
Unique Name	Ggra9307.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	681

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:482245..484711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009612713.1
PFAMs	Sec16,Sec16_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20353
Evalue	3.08e-10
EggNOG OGs	KOG1913@1\|root,KOG1913@2759\|Eukaryota,37P4X@33090\|Viridiplantae,3G994@35493\|Streptophyta,44N19@71274\|asterids
Description	Conserved gene of
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9307	Ggra9307	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 482245..484711 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1	Ggra9307.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 482245..484711 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1.start1	Ggra9307.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 482245..482247 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1.CDS1	Ggra9307.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 482245..483505 +
Ggra9307.t1.CDS2	Ggra9307.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 483930..484711 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1.exon1	Ggra9307.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 482245..483505 +
Ggra9307.t1.exon2	Ggra9307.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 483930..484711 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1.intron1	Ggra9307.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000863_pilon 483506..483929 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9307.t1.stop1	Ggra9307.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 484709..484711 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:482245..484711+
coding sequence from alignment at tig00000863_pilon:482245..484711+

mRNA sequence

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp
MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLT
EWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHAC
YLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINA
RNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSV
AAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARR
SKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAPSDHVHANHPPH
LSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVG
LIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSH
MRSASVGALPSEYFSSSQFAREDPDEEEDVPPPPPDDDNMFSSDGSNVQT
SASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMSNSHDQIATPFNP
LSSYPGSLDNSVGGDDGSATSVASAAGAPVPYSAVPSFTASSTGNSNKYR
AGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAFGGVSLASGGGY
KIFTPTPVPSSSTGNSDVGHGANSSASVVKTSDPMPASGSDISSSQNAPM
TNSSHSDALPPKPPSYTSSLGSGRQPRMMA*

spliced messenger RNA

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2043bp|location=Sequence derived from alignment at tig00000863_pilon:482245..484711+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATAGGAAGCTCTACATGTCAGTCCTTTGTGATTTTGCTAAGGT
TAACTTGCATGAAGGCTCAGCGTTACAGACTCTTTGTTTATCCTTGTCGG
AAAATGACTCAGAGATAACCAGACGGATTACTTCGCCTGCTGGACTCACG
GAATGGAGAAAGAACGTCGGAATGCTACTAACAAGTGGTGCGTCTATTAC
TAGGGACAGCGAGAAAAGCAAACGATTCATGTCTCTTATTGACCAAGTGG
GAGATGCCCTTCTTGCCCAAAATGAGGATGTCGTCGGATCGCATGCTTGT
TATCTGCTTTCCGGTCGTTTGGACTCTCTAGATCGCAACCAAATATGTCT
CTTGGGTGCGAATTCAAAGACAACCCCTGGACGTCCGGGATCATTTGGAT
CCCCAGCAGCTATACTGCAATCAATTGTCTTCGAAGCAACAATTAATGCT
CGAAACGGAAAGACTTGCCCTCATATCCTGCCATTTCGATTACTGCTCGC
CCTTGAAATTGCGTCAGTTGGTCGACCTGAGGTTGCCTTGGCTCATTGTA
ACTCAATTTCCAAGGAAGTTCGAGCGATATTCGAGTCAGGAAATAGCGTT
GCGGCGCAGCTATTTACATCTCCGTTTTTGTCGTGCTTAGAATCTTTTGA
GCATCAACTACGAATTAATCTAGGCGTGCAAGAGAAAGGAGAGAAGCAGA
CAAGGTTATCTGCACTTCGACAGTCTTTGACATCAGTTTTCGCTCGCCGT
TCGAAGGACCAAACTGGCAAACAATCATCTCAAGAGTTAGGGAGTCAAAA
TACGATGGCTGGTTCTCAACCATTTGTACCCACGCCACCTGTGGGACCTG
GTCACATTCATGCCCCCTCGGATCATGTTCATGCCAACCACCCTCCTCAC
CTCTCACTTGATTCGCAACGTGCAGGTATATTCAATCCTGCTCAGATTTC
TCAACTTCCCAATCAGGCTAACGAGGCCTTTGATCAATCTGCAAAGAAAG
AGAAGAGTGGGAACGAGAAGTGGAACTACCTCGTCCAGAAAACAGTTGGG
CTTATTGCCCCAGCTGACTATGACCTCTCCCCCCCTCCCCCTGCACGTGC
ACCTCCAGCTGTATTCTGTGGTCAAGGGCACCCCTCACCATTTGGTCTTG
ATGGCGGAGCCGGTACCAGAGCGCCTGGACAAGGTCTTACTCCGAGCCAT
ATGCGATCAGCCTCGGTCGGGGCACTTCCGAGCGAGTATTTCAGTAGCTC
TCAATTTGCAAGAGAGGATCCGGATGAAGAAGAAGACGTTCCGCCGCCGC
CGCCAGATGATGATAATATGTTTAGCAGTGATGGGAGCAACGTGCAGACC
AGTGCTAGTTATGATTTGCTTCCGAATCCTTCCAACAACGATCACAACAC
CACCGCTCTCTTGCGCTCCCAAAGCGCTCAGGATGCCCGTGATATGAACA
GCTTTAACATGTCAAATTCTCATGATCAAATAGCGACACCCTTTAATCCG
CTGTCTTCATACCCTGGTTCCCTGGACAACAGTGTTGGTGGAGATGACGG
AAGCGCTACATCAGTTGCTTCGGCGGCAGGTGCTCCTGTACCATACTCTG
CTGTACCATCGTTTACGGCATCTTCAACAGGAAACAGCAACAAATATAGG
GCGGGAGGAGGTCGTCGCTCTAATAGAAGAGCATACGTTGACACCTTCAA
CAAAGGAAGGCCTCCTGCACCTATGTCAACAATTCCGACACCGGCGAGAC
CCGCCGTTCCAGCGTTTGGAGGCGTATCATTGGCATCGGGAGGTGGATAC
AAGATATTCACACCAACCCCCGTGCCGTCGTCTAGTACTGGTAACTCGGA
CGTAGGGCATGGAGCAAACTCTTCTGCAAGTGTTGTTAAGACGAGCGACC
CAATGCCGGCTTCCGGCTCAGATATTTCATCCTCACAGAATGCGCCAATG
ACCAATTCGTCTCACAGCGATGCCTTACCTCCGAAGCCTCCGAGTTACAC
CTCAAGCTTAGGCTCAGGAAGGCAACCTCGCATGATGGCGTAA

protein sequence of Ggra9307.t1

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=681bp
MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLT
EWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHAC
YLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINA
RNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSV
AAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARR
SKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAPSDHVHANHPPH
LSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVG
LIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSH
MRSASVGALPSEYFSSSQFAREDPDEEEDVPPPPPDDDNMFSSDGSNVQT
SASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMSNSHDQIATPFNP
LSSYPGSLDNSVGGDDGSATSVASAAGAPVPYSAVPSFTASSTGNSNKYR
AGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAFGGVSLASGGGY
KIFTPTPVPSSSTGNSDVGHGANSSASVVKTSDPMPASGSDISSSQNAPM
TNSSHSDALPPKPPSYTSSLGSGRQPRMMA*

mRNA from alignment at tig00000863_pilon:482245..484711+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2467bp|location=Sequence derived from alignment at tig00000863_pilon:482245..484711+ (Gracilaria gracilis GNS1m male)
ATGATTGATAGGAAGCTCTACATGTCAGTCCTTTGTGATTTTGCTAAGGT
TAACTTGCATGAAGGCTCAGCGTTACAGACTCTTTGTTTATCCTTGTCGG
AAAATGACTCAGAGATAACCAGACGGATTACTTCGCCTGCTGGACTCACG
GAATGGAGAAAGAACGTCGGAATGCTACTAACAAGTGGTGCGTCTATTAC
TAGGGACAGCGAGAAAAGCAAACGATTCATGTCTCTTATTGACCAAGTGG
GAGATGCCCTTCTTGCCCAAAATGAGGATGTCGTCGGATCGCATGCTTGT
TATCTGCTTTCCGGTCGTTTGGACTCTCTAGATCGCAACCAAATATGTCT
CTTGGGTGCGAATTCAAAGACAACCCCTGGACGTCCGGGATCATTTGGAT
CCCCAGCAGCTATACTGCAATCAATTGTCTTCGAAGCAACAATTAATGCT
CGAAACGGAAAGACTTGCCCTCATATCCTGCCATTTCGATTACTGCTCGC
CCTTGAAATTGCGTCAGTTGGTCGACCTGAGGTTGCCTTGGCTCATTGTA
ACTCAATTTCCAAGGAAGTTCGAGCGATATTCGAGTCAGGAAATAGCGTT
GCGGCGCAGCTATTTACATCTCCGTTTTTGTCGTGCTTAGAATCTTTTGA
GCATCAACTACGAATTAATCTAGGCGTGCAAGAGAAAGGAGAGAAGCAGA
CAAGGTTATCTGCACTTCGACAGTCTTTGACATCAGTTTTCGCTCGCCGT
TCGAAGGACCAAACTGGCAAACAATCATCTCAAGAGTTAGGGAGTCAAAA
TACGATGGCTGGTTCTCAACCATTTGTACCCACGCCACCTGTGGGACCTG
GTCACATTCATGCCCCCTCGGATCATGTTCATGCCAACCACCCTCCTCAC
CTCTCACTTGATTCGCAACGTGCAGGTATATTCAATCCTGCTCAGATTTC
TCAACTTCCCAATCAGGCTAACGAGGCCTTTGATCAATCTGCAAAGAAAG
AGAAGAGTGGGAACGAGAAGTGGAACTACCTCGTCCAGAAAACAGTTGGG
CTTATTGCCCCAGCTGACTATGACCTCTCCCCCCCTCCCCCTGCACGTGC
ACCTCCAGCTGTATTCTGTGGTCAAGGGCACCCCTCACCATTTGGTCTTG
ATGGCGGAGCCGGTACCAGAGCGCCTGGACAAGGTCTTACTCCGAGCCAT
ATGCGATCAGCCTCGGTCGGGGCACTTCCGAGCGAGTATTTCAGTAGCTC
TCAATTTGCAAGTAAGACAGAGGTAGCATCTGGACAGCGaattcaatcat
acgaagatggacgacatgcaagcactccccagatggatatctcgtctgat
aagacagatcaaaccctatttaatggtgttcctgtacagaaggtcactag
agaagaggagagtgatgcgcttgtacatcggcgttctgcatcagatatga
ccttgcaatctcaaacttctgagaagaaacccccactgcatccgaagaaa
cctgtacgggcgactaaacagacggatacttcaatggaaagaacagcgtc
aaagaaggggtggagagagcgtctacgagaaaagttgactgcagcgttca
gtggtagtggtcccccaagggcccatatgggagaagaaaacaagttcgtt
tttgacaaacagcgtggccGATGGATAATTTGAAGGAGAGGATCCGGATG
AAGAAGAAGACGTTCCGCCGCCGCCGCCAGATGATGATAATATGTTTAGC
AGTGATGGGAGCAACGTGCAGACCAGTGCTAGTTATGATTTGCTTCCGAA
TCCTTCCAACAACGATCACAACACCACCGCTCTCTTGCGCTCCCAAAGCG
CTCAGGATGCCCGTGATATGAACAGCTTTAACATGTCAAATTCTCATGAT
CAAATAGCGACACCCTTTAATCCGCTGTCTTCATACCCTGGTTCCCTGGA
CAACAGTGTTGGTGGAGATGACGGAAGCGCTACATCAGTTGCTTCGGCGG
CAGGTGCTCCTGTACCATACTCTGCTGTACCATCGTTTACGGCATCTTCA
ACAGGAAACAGCAACAAATATAGGGCGGGAGGAGGTCGTCGCTCTAATAG
AAGAGCATACGTTGACACCTTCAACAAAGGAAGGCCTCCTGCACCTATGT
CAACAATTCCGACACCGGCGAGACCCGCCGTTCCAGCGTTTGGAGGCGTA
TCATTGGCATCGGGAGGTGGATACAAGATATTCACACCAACCCCCGTGCC
GTCGTCTAGTACTGGTAACTCGGACGTAGGGCATGGAGCAAACTCTTCTG
CAAGTGTTGTTAAGACGAGCGACCCAATGCCGGCTTCCGGCTCAGATATT
TCATCCTCACAGAATGCGCCAATGACCAATTCGTCTCACAGCGATGCCTT
ACCTCCGAAGCCTCCGAGTTACACCTCAAGCTTAGGCTCAGGAAGGCAAC
CTCGCATGATGGCGTAA

Coding sequence (CDS) from alignment at tig00000863_pilon:482245..484711+

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2043bp|location=Sequence derived from alignment at tig00000863_pilon:482245..484711+ (Gracilaria gracilis GNS1m male)
ATGATTGATAGGAAGCTCTACATGTCAGTCCTTTGTGATTTTGCTAAGGT
TAACTTGCATGAAGGCTCAGCGTTACAGACTCTTTGTTTATCCTTGTCGG
AAAATGACTCAGAGATAACCAGACGGATTACTTCGCCTGCTGGACTCACG
GAATGGAGAAAGAACGTCGGAATGCTACTAACAAGTGGTGCGTCTATTAC
TAGGGACAGCGAGAAAAGCAAACGATTCATGTCTCTTATTGACCAAGTGG
GAGATGCCCTTCTTGCCCAAAATGAGGATGTCGTCGGATCGCATGCTTGT
TATCTGCTTTCCGGTCGTTTGGACTCTCTAGATCGCAACCAAATATGTCT
CTTGGGTGCGAATTCAAAGACAACCCCTGGACGTCCGGGATCATTTGGAT
CCCCAGCAGCTATACTGCAATCAATTGTCTTCGAAGCAACAATTAATGCT
CGAAACGGAAAGACTTGCCCTCATATCCTGCCATTTCGATTACTGCTCGC
CCTTGAAATTGCGTCAGTTGGTCGACCTGAGGTTGCCTTGGCTCATTGTA
ACTCAATTTCCAAGGAAGTTCGAGCGATATTCGAGTCAGGAAATAGCGTT
GCGGCGCAGCTATTTACATCTCCGTTTTTGTCGTGCTTAGAATCTTTTGA
GCATCAACTACGAATTAATCTAGGCGTGCAAGAGAAAGGAGAGAAGCAGA
CAAGGTTATCTGCACTTCGACAGTCTTTGACATCAGTTTTCGCTCGCCGT
TCGAAGGACCAAACTGGCAAACAATCATCTCAAGAGTTAGGGAGTCAAAA
TACGATGGCTGGTTCTCAACCATTTGTACCCACGCCACCTGTGGGACCTG
GTCACATTCATGCCCCCTCGGATCATGTTCATGCCAACCACCCTCCTCAC
CTCTCACTTGATTCGCAACGTGCAGGTATATTCAATCCTGCTCAGATTTC
TCAACTTCCCAATCAGGCTAACGAGGCCTTTGATCAATCTGCAAAGAAAG
AGAAGAGTGGGAACGAGAAGTGGAACTACCTCGTCCAGAAAACAGTTGGG
CTTATTGCCCCAGCTGACTATGACCTCTCCCCCCCTCCCCCTGCACGTGC
ACCTCCAGCTGTATTCTGTGGTCAAGGGCACCCCTCACCATTTGGTCTTG
ATGGCGGAGCCGGTACCAGAGCGCCTGGACAAGGTCTTACTCCGAGCCAT
ATGCGATCAGCCTCGGTCGGGGCACTTCCGAGCGAGTATTTCAGTAGCTC
TCAATTTGCAAGAGAGGATCCGGATGAAGAAGAAGACGTTCCGCCGCCGC
CGCCAGATGATGATAATATGTTTAGCAGTGATGGGAGCAACGTGCAGACC
AGTGCTAGTTATGATTTGCTTCCGAATCCTTCCAACAACGATCACAACAC
CACCGCTCTCTTGCGCTCCCAAAGCGCTCAGGATGCCCGTGATATGAACA
GCTTTAACATGTCAAATTCTCATGATCAAATAGCGACACCCTTTAATCCG
CTGTCTTCATACCCTGGTTCCCTGGACAACAGTGTTGGTGGAGATGACGG
AAGCGCTACATCAGTTGCTTCGGCGGCAGGTGCTCCTGTACCATACTCTG
CTGTACCATCGTTTACGGCATCTTCAACAGGAAACAGCAACAAATATAGG
GCGGGAGGAGGTCGTCGCTCTAATAGAAGAGCATACGTTGACACCTTCAA
CAAAGGAAGGCCTCCTGCACCTATGTCAACAATTCCGACACCGGCGAGAC
CCGCCGTTCCAGCGTTTGGAGGCGTATCATTGGCATCGGGAGGTGGATAC
AAGATATTCACACCAACCCCCGTGCCGTCGTCTAGTACTGGTAACTCGGA
CGTAGGGCATGGAGCAAACTCTTCTGCAAGTGTTGTTAAGACGAGCGACC
CAATGCCGGCTTCCGGCTCAGATATTTCATCCTCACAGAATGCGCCAATG
ACCAATTCGTCTCACAGCGATGCCTTACCTCCGAAGCCTCCGAGTTACAC
CTCAAGCTTAGGCTCAGGAAGGCAACCTCGCATGATGGCGTAA