Ggra9305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9305.t1
Unique NameGgra9305.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length470
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:444753..446162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9305Ggra9305Gracilaria gracilis GNS1m malegenetig00000863_pilon 444753..446162 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9305.t1.stop1Ggra9305.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 444753..444755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9305.t1.CDS1Ggra9305.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 444753..446162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9305.t1.exon1Ggra9305.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 444753..446162 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9305.t1.start1Ggra9305.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 446160..446162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9305.t1Ggra9305.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 444753..446162 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9305.t1 ID=Ggra9305.t1|Name=Ggra9305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=470bp
MNLPPFLVFVLLFQYFALCCSIEEGRDWFGECNVVSCSLQTQSCDPQSST
SETKFFHNGGLFYCPPDGEYDYITWQFDCREEVLLLPTAADHRTIEGVSD
TEVKLFGNAIRSTSRENIAIMIKPDSFLFPSSSSLIPLYKSADEQLESFL
ECNGERLEPQARDGDGTVLDLTIEGPLPRFGDSVVDMCWENNSTCTDGFA
CAECNEDKSVDLVRVVGYNDTTNALIEGFIARTRRGSSCPIAPSIVYDDV
YAYVYERFQVNADFNARITEITGSSSHGEDLLENAEKIFSCPSSSANAPP
PETSNAGASADIETAPASNPDSVAIGSNPPASTTTGSSPEQAITEGEEAC
LEVDWLRSSGVRDEQMLHKENIVSRVLCPRAGIPCGTPDHLVLKDEELMS
YADLCSGQKCETRRAVVNSANHLHLMRAPIHYEELSVTGCSGKRGSWQRW
VEELIVRRVYIAHRTWLMG*
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spliced messenger RNA

>Ggra9305.t1 ID=Ggra9305.t1|Name=Ggra9305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000863_pilon:444753..446162- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTTCCTCCGTTTCTCGTCTTCGTGCTGCTATTCCAATACTTCGC
ACTATGTTGCTCCATTGAGGAAGGCAGAGATTGGTTTGGCGAATGTAATG
TGGTTTCCTGTTCATTGCAAACCCAAAGTTGTGATCCGCAGTCTTCCACT
TCGGAAACTAAATTCTTCCACAATGGAGGTCTTTTCTATTGCCCACCCGA
CGGCGAGTATGACTACATCACGTGGCAGTTTGACTGTCGTGAAGAGGTTC
TCTTGTTGCCCACCGCTGCAGATCATCGAACAATAGAAGGAGTTAGTGAC
ACCGAGGTTAAGCTTTTCGGCAACGCAATTCGATCTACATCAAGAGAAAA
TATTGCCATAATGATCAAACCAGATTCATTTCTTTTTCCTTCCTCTTCGA
GTTTAATTCCCTTGTATAAAAGTGCGGATGAACAACTCGAGTCATTTCTG
GAATGCAATGGAGAGCGATTGGAGCCGCAAGCACGTGATGGAGATGGAAC
AGTGCTTGATCTCACAATTGAAGGACCCCTACCCCGCTTTGGTGATTCCG
TTGTTGATATGTGCTGGGAGAACAACTCTACATGTACTGATGGTTTTGCG
TGTGCAGAATGTAATGAAGACAAATCCGTTGACTTGGTGAGAGTAGTTGG
GTACAACGATACCACCAACGCGCTCATCGAGGGTTTCATCGCCAGGACCA
GACGTGGTTCGAGTTGTCCCATCGCTCCATCTATCGTGTACGATGATGTC
TATGCATACGTATATGAACGCTTTCAGGTCAATGCTGATTTTAACGCGCG
AATAACGGAGATTACGGGTTCCAGCTCTCATGGTGAAGATTTGCTTGAAA
ACGCTGAAAAGATTTTCTCTTGTCCTTCCTCCTCCGCGAATGCTCCTCCA
CCTGAGACATCGAATGCAGGCGCTTCTGCAGATATCGAGACGGCTCCGGC
TTCAAACCCTGATTCTGTTGCAATAGGGAGCAATCCACCAGCTAGCACAA
CCACCGGCTCGTCCCCAGAACAGGCAATCACTGAAGGAGAAGAGGCGTGC
TTAGAAGTGGATTGGCTACGCTCCTCTGGCGTGAGGGATGAGCAAATGCT
GCACAAGGAAAATATTGTGTCCAGAGTGCTTTGCCCACGAGCTGGCATTC
CATGTGGCACACCGGATCACCTTGTGCTCAAAGACGAGGAGCTCATGAGC
TACGCCGATCTGTGCAGCGGTCAAAAATGTGAAACAAGAAGAGCTGTGGT
GAACAGCGCGAATCACTTGCACCTGATGCGGGCGCCAATACACTACGAGG
AGTTGAGTGTGACGGGTTGCAGTGGAAAGCGCGGTTCGTGGCAGAGATGG
GTAGAAGAGCTGATTGTGCGACGTGTGTACATTGCTCACAGAACATGGCT
GATGGGGTAA
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protein sequence of Ggra9305.t1

>Ggra9305.t1 ID=Ggra9305.t1|Name=Ggra9305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=470bp
MNLPPFLVFVLLFQYFALCCSIEEGRDWFGECNVVSCSLQTQSCDPQSST
SETKFFHNGGLFYCPPDGEYDYITWQFDCREEVLLLPTAADHRTIEGVSD
TEVKLFGNAIRSTSRENIAIMIKPDSFLFPSSSSLIPLYKSADEQLESFL
ECNGERLEPQARDGDGTVLDLTIEGPLPRFGDSVVDMCWENNSTCTDGFA
CAECNEDKSVDLVRVVGYNDTTNALIEGFIARTRRGSSCPIAPSIVYDDV
YAYVYERFQVNADFNARITEITGSSSHGEDLLENAEKIFSCPSSSANAPP
PETSNAGASADIETAPASNPDSVAIGSNPPASTTTGSSPEQAITEGEEAC
LEVDWLRSSGVRDEQMLHKENIVSRVLCPRAGIPCGTPDHLVLKDEELMS
YADLCSGQKCETRRAVVNSANHLHLMRAPIHYEELSVTGCSGKRGSWQRW
VEELIVRRVYIAHRTWLMG*
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mRNA from alignment at tig00000863_pilon:444753..446162-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9305.t1 ID=Ggra9305.t1|Name=Ggra9305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000863_pilon:444753..446162- (Gracilaria gracilis GNS1m male)
ATGAATCTTCCTCCGTTTCTCGTCTTCGTGCTGCTATTCCAATACTTCGC
ACTATGTTGCTCCATTGAGGAAGGCAGAGATTGGTTTGGCGAATGTAATG
TGGTTTCCTGTTCATTGCAAACCCAAAGTTGTGATCCGCAGTCTTCCACT
TCGGAAACTAAATTCTTCCACAATGGAGGTCTTTTCTATTGCCCACCCGA
CGGCGAGTATGACTACATCACGTGGCAGTTTGACTGTCGTGAAGAGGTTC
TCTTGTTGCCCACCGCTGCAGATCATCGAACAATAGAAGGAGTTAGTGAC
ACCGAGGTTAAGCTTTTCGGCAACGCAATTCGATCTACATCAAGAGAAAA
TATTGCCATAATGATCAAACCAGATTCATTTCTTTTTCCTTCCTCTTCGA
GTTTAATTCCCTTGTATAAAAGTGCGGATGAACAACTCGAGTCATTTCTG
GAATGCAATGGAGAGCGATTGGAGCCGCAAGCACGTGATGGAGATGGAAC
AGTGCTTGATCTCACAATTGAAGGACCCCTACCCCGCTTTGGTGATTCCG
TTGTTGATATGTGCTGGGAGAACAACTCTACATGTACTGATGGTTTTGCG
TGTGCAGAATGTAATGAAGACAAATCCGTTGACTTGGTGAGAGTAGTTGG
GTACAACGATACCACCAACGCGCTCATCGAGGGTTTCATCGCCAGGACCA
GACGTGGTTCGAGTTGTCCCATCGCTCCATCTATCGTGTACGATGATGTC
TATGCATACGTATATGAACGCTTTCAGGTCAATGCTGATTTTAACGCGCG
AATAACGGAGATTACGGGTTCCAGCTCTCATGGTGAAGATTTGCTTGAAA
ACGCTGAAAAGATTTTCTCTTGTCCTTCCTCCTCCGCGAATGCTCCTCCA
CCTGAGACATCGAATGCAGGCGCTTCTGCAGATATCGAGACGGCTCCGGC
TTCAAACCCTGATTCTGTTGCAATAGGGAGCAATCCACCAGCTAGCACAA
CCACCGGCTCGTCCCCAGAACAGGCAATCACTGAAGGAGAAGAGGCGTGC
TTAGAAGTGGATTGGCTACGCTCCTCTGGCGTGAGGGATGAGCAAATGCT
GCACAAGGAAAATATTGTGTCCAGAGTGCTTTGCCCACGAGCTGGCATTC
CATGTGGCACACCGGATCACCTTGTGCTCAAAGACGAGGAGCTCATGAGC
TACGCCGATCTGTGCAGCGGTCAAAAATGTGAAACAAGAAGAGCTGTGGT
GAACAGCGCGAATCACTTGCACCTGATGCGGGCGCCAATACACTACGAGG
AGTTGAGTGTGACGGGTTGCAGTGGAAAGCGCGGTTCGTGGCAGAGATGG
GTAGAAGAGCTGATTGTGCGACGTGTGTACATTGCTCACAGAACATGGCT
GATGGGGTAA
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Coding sequence (CDS) from alignment at tig00000863_pilon:444753..446162-

>Ggra9305.t1 ID=Ggra9305.t1|Name=Ggra9305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1410bp|location=Sequence derived from alignment at tig00000863_pilon:444753..446162- (Gracilaria gracilis GNS1m male)
ATGAATCTTCCTCCGTTTCTCGTCTTCGTGCTGCTATTCCAATACTTCGC
ACTATGTTGCTCCATTGAGGAAGGCAGAGATTGGTTTGGCGAATGTAATG
TGGTTTCCTGTTCATTGCAAACCCAAAGTTGTGATCCGCAGTCTTCCACT
TCGGAAACTAAATTCTTCCACAATGGAGGTCTTTTCTATTGCCCACCCGA
CGGCGAGTATGACTACATCACGTGGCAGTTTGACTGTCGTGAAGAGGTTC
TCTTGTTGCCCACCGCTGCAGATCATCGAACAATAGAAGGAGTTAGTGAC
ACCGAGGTTAAGCTTTTCGGCAACGCAATTCGATCTACATCAAGAGAAAA
TATTGCCATAATGATCAAACCAGATTCATTTCTTTTTCCTTCCTCTTCGA
GTTTAATTCCCTTGTATAAAAGTGCGGATGAACAACTCGAGTCATTTCTG
GAATGCAATGGAGAGCGATTGGAGCCGCAAGCACGTGATGGAGATGGAAC
AGTGCTTGATCTCACAATTGAAGGACCCCTACCCCGCTTTGGTGATTCCG
TTGTTGATATGTGCTGGGAGAACAACTCTACATGTACTGATGGTTTTGCG
TGTGCAGAATGTAATGAAGACAAATCCGTTGACTTGGTGAGAGTAGTTGG
GTACAACGATACCACCAACGCGCTCATCGAGGGTTTCATCGCCAGGACCA
GACGTGGTTCGAGTTGTCCCATCGCTCCATCTATCGTGTACGATGATGTC
TATGCATACGTATATGAACGCTTTCAGGTCAATGCTGATTTTAACGCGCG
AATAACGGAGATTACGGGTTCCAGCTCTCATGGTGAAGATTTGCTTGAAA
ACGCTGAAAAGATTTTCTCTTGTCCTTCCTCCTCCGCGAATGCTCCTCCA
CCTGAGACATCGAATGCAGGCGCTTCTGCAGATATCGAGACGGCTCCGGC
TTCAAACCCTGATTCTGTTGCAATAGGGAGCAATCCACCAGCTAGCACAA
CCACCGGCTCGTCCCCAGAACAGGCAATCACTGAAGGAGAAGAGGCGTGC
TTAGAAGTGGATTGGCTACGCTCCTCTGGCGTGAGGGATGAGCAAATGCT
GCACAAGGAAAATATTGTGTCCAGAGTGCTTTGCCCACGAGCTGGCATTC
CATGTGGCACACCGGATCACCTTGTGCTCAAAGACGAGGAGCTCATGAGC
TACGCCGATCTGTGCAGCGGTCAAAAATGTGAAACAAGAAGAGCTGTGGT
GAACAGCGCGAATCACTTGCACCTGATGCGGGCGCCAATACACTACGAGG
AGTTGAGTGTGACGGGTTGCAGTGGAAAGCGCGGTTCGTGGCAGAGATGG
GTAGAAGAGCTGATTGTGCGACGTGTGTACATTGCTCACAGAACATGGCT
GATGGGGTAA
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