Ggra9303.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9303.t1
Unique NameGgra9303.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:369093..371522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9303Ggra9303Gracilaria gracilis GNS1m malegenetig00000863_pilon 369093..371522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1Ggra9303.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 369093..371522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1.start1Ggra9303.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 369093..369095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1.CDS1Ggra9303.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 369093..369223 +
Ggra9303.t1.CDS2Ggra9303.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 370910..371522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1.exon1Ggra9303.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 369093..369223 +
Ggra9303.t1.exon2Ggra9303.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 370910..371522 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1.intron1Ggra9303.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 369224..370909 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1.stop1Ggra9303.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 371520..371522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MLNRVAQLQHSSSDFWIGAKMIQTCLTDCESWKMNEIVNLGDHFEGETTD
GSRSGIRKYLDTLWCWKIQQPRGEAVESDVRSNSSYSQREWWTVEDEDKY
VHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRV
LEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAH
KSETLRRFVDEVASDAESNGASWAEAAQDDVAAATTQLEGIEVDGSG*
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spliced messenger RNA

>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000863_pilon:369093..371522+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACCGCGTTGCTCAGCTACAGCATTCCTCGTCTGACTTTTGGAT
TGGTGCGAAGATGATTCAGACCTGTTTGACCGACTGCGAGAGCTGGAAGA
TGAACGAGATAGTGAATTTAGGGGACCACTTTGAAGGAGAGACAACCGAT
GGCTCAAGAAGCGGCATCCGAAAGTATCTTGACACACTTTGGTGCTGGAA
AATACAGCAACCACGAGGTGAAGCGGTAGAATCTGATGTCAGATCTAACA
GTTCGTATAGTCAACGAGAATGGTGGACGGTTGAAGACGAGGATAAATAT
GTGCACAACAACACCTGTCGCCTGTTGAACGAGTCAGGAAACCAAGAAGA
ACTGCTCTGGCTTGTACACAAACCGCAGTGGATCATCAAGCGGTTGCGCG
AAAACGGAGCGTTTGCAGTGGAGCGCGACATTGCCATCGCCATGCGCGTC
TTGGAACAAAGCCAGATGGAACAGAAGGACGAAATGAAAAGCAGTCTGGA
AGCCATTGCGGAGGCGTCGAGCATGGGCGGCCAAGCAGTCAGAGAGAACC
CCCGCCACGCTTGGTTGCAGCTGTATACAACGCTTTTGCCTCACGCGCAC
AAGAGTGAGACCTTGCGACGATTCGTTGATGAAGTAGCTAGCGACGCTGA
GAGCAACGGGGCATCGTGGGCGGAAGCAGCTCAAGATGATGTTGCAGCCG
CTACAACCCAACTGGAAGGTATCGAGGTGGACGGGAGCGGTTAA
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protein sequence of Ggra9303.t1

>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MLNRVAQLQHSSSDFWIGAKMIQTCLTDCESWKMNEIVNLGDHFEGETTD
GSRSGIRKYLDTLWCWKIQQPRGEAVESDVRSNSSYSQREWWTVEDEDKY
VHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRV
LEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAH
KSETLRRFVDEVASDAESNGASWAEAAQDDVAAATTQLEGIEVDGSG*
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mRNA from alignment at tig00000863_pilon:369093..371522+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2430bp|location=Sequence derived from alignment at tig00000863_pilon:369093..371522+ (Gracilaria gracilis GNS1m male)
ATGCTGAACCGCGTTGCTCAGCTACAGCATTCCTCGTCTGACTTTTGGAT
TGGTGCGAAGATGATTCAGACCTGTTTGACCGACTGCGAGAGCTGGAAGA
TGAACGAGATAGTGAATTTAGGGGACCACTTGTATGTTTTCGCTTGTTTG
AACTGGGGCTGTCTGAACTCATCAGGTGGCGAAAGGTCGCTTTCGACCGT
TGTCTCTACCTCCTCcagggagctgcggtaaattctacatttggcaaaat
tggagctaaagaataagtggtactattcgtgttacattatatagtacagt
atattactttgctcggtttacagtcagttttgtgacttcacgcactgcga
cgccctaccaattactcgattaaaaactgtattcaatattacactgacca
acttcctgcgctgtaagtatatgtgaatctgcacgtgagtgaagcattgt
tcattccaccttatcgcaaactactagatggcgctaaatagcgctacttg
gcggtgatatcgaggattggaacgccggtacaatatctcagtgaagaagt
atgggaaaaaggttggcatacttcgatgcaaacgctcaaggcacatcaaa
gtatgcttttaaggtagtttaccagtgctgttcaacagaaaaatatgcgt
actaagaagcgccaaatagcgatatttgcgctatataacgcgtctaagta
cgcatgtagatttcgtttttgggatgtagtttgtatttttttggcgtact
tcgatgtgccttctacagagctatggaagcacgccattatgtttgggtcg
ttagaaaagattgtaaatctagtagagttctgatatttgacaatgcggta
agtgcgacacttgcaacaattagcgctaagtgtcgaagatggcgatgatg
ttgtcagggtattaccagatttgcactgcctgcattgcctgcttacagtg
aaactacaaggctgaaatggaacatcaacgataaaacagcgttttgcaaa
cagcgtcacgctttggatttctcgccatgcctaattccagcgtatcaact
tgaatcttattaattactgtagtgaacaaaacaattataatgtgtcaaca
ctctgttaatcgttaatttcccgcagctcccTGGATCTCGTGACTTTTTT
TGTTCGCCTTGCTGTTGATTTTTTATCGGCCACATGTCAATCAAATTCGT
GTGGCCTTTTTCTACATTTTCGCTGGAACCCGCACAACCTTTGCATGCTC
GCAGCCATCTCCGTTGCTCCGTCATCTCTTCAACCCAAGTGAACAATTTC
CACTTCAGATGAGCGACGCGTTGGCAACAGATCGCGCCGCGGCCGGCGCC
ACGCCCTGCGAGCCGCCCCACAGTGAGCCCGACTACGCGCACGTCATGAC
gcgaaacatcgtgcgtacctccatggccgtgctggaacaacggtggagcc
gcgcggagagcaagcgcttgttttcatccctatcgcttcgccagatgttt
cgcgcgctctgcgtgcttaagagccagcagcaggtgccgatctcgatgct
gcgacgactgtggggcttcgaggacgacagcgacgcgctgcaagtgatga
aagcgctcaatgacttgcagctggttgaagtcactgctcctcacaactat
ggcgaactggcgtcggttcttagtgctcatgatgacattctggatgtgat
catgttggaggcgcaagaacatggcgagctccaatcgcatttcaaacggc
tggtggataactaTCTCCCCACTGTTACTGACAGCGCACAAAATGACGCT
CACAAAAATTATGTCAGTGAAGGAGAGACAACCGATGGCTCAAGAAGCGG
CATCCGAAAGTATCTTGACACACTTTGGTGCTGGAAAATACAGCAACCAC
GAGGTGAAGCGGTAGAATCTGATGTCAGATCTAACAGTTCGTATAGTCAA
CGAGAATGGTGGACGGTTGAAGACGAGGATAAATATGTGCACAACAACAC
CTGTCGCCTGTTGAACGAGTCAGGAAACCAAGAAGAACTGCTCTGGCTTG
TACACAAACCGCAGTGGATCATCAAGCGGTTGCGCGAAAACGGAGCGTTT
GCAGTGGAGCGCGACATTGCCATCGCCATGCGCGTCTTGGAACAAAGCCA
GATGGAACAGAAGGACGAAATGAAAAGCAGTCTGGAAGCCATTGCGGAGG
CGTCGAGCATGGGCGGCCAAGCAGTCAGAGAGAACCCCCGCCACGCTTGG
TTGCAGCTGTATACAACGCTTTTGCCTCACGCGCACAAGAGTGAGACCTT
GCGACGATTCGTTGATGAAGTAGCTAGCGACGCTGAGAGCAACGGGGCAT
CGTGGGCGGAAGCAGCTCAAGATGATGTTGCAGCCGCTACAACCCAACTG
GAAGGTATCGAGGTGGACGGGAGCGGTTAA
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Coding sequence (CDS) from alignment at tig00000863_pilon:369093..371522+

>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000863_pilon:369093..371522+ (Gracilaria gracilis GNS1m male)
ATGCTGAACCGCGTTGCTCAGCTACAGCATTCCTCGTCTGACTTTTGGAT
TGGTGCGAAGATGATTCAGACCTGTTTGACCGACTGCGAGAGCTGGAAGA
TGAACGAGATAGTGAATTTAGGGGACCACTTTGAAGGAGAGACAACCGAT
GGCTCAAGAAGCGGCATCCGAAAGTATCTTGACACACTTTGGTGCTGGAA
AATACAGCAACCACGAGGTGAAGCGGTAGAATCTGATGTCAGATCTAACA
GTTCGTATAGTCAACGAGAATGGTGGACGGTTGAAGACGAGGATAAATAT
GTGCACAACAACACCTGTCGCCTGTTGAACGAGTCAGGAAACCAAGAAGA
ACTGCTCTGGCTTGTACACAAACCGCAGTGGATCATCAAGCGGTTGCGCG
AAAACGGAGCGTTTGCAGTGGAGCGCGACATTGCCATCGCCATGCGCGTC
TTGGAACAAAGCCAGATGGAACAGAAGGACGAAATGAAAAGCAGTCTGGA
AGCCATTGCGGAGGCGTCGAGCATGGGCGGCCAAGCAGTCAGAGAGAACC
CCCGCCACGCTTGGTTGCAGCTGTATACAACGCTTTTGCCTCACGCGCAC
AAGAGTGAGACCTTGCGACGATTCGTTGATGAAGTAGCTAGCGACGCTGA
GAGCAACGGGGCATCGTGGGCGGAAGCAGCTCAAGATGATGTTGCAGCCG
CTACAACCCAACTGGAAGGTATCGAGGTGGACGGGAGCGGTTAA
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