Ggra9302.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9302.t1
Unique Name	Ggra9302.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:270212..272236 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9302	Ggra9302	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 270212..272236 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9302.t1.stop1	Ggra9302.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 270212..270214 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9302.t1.CDS1	Ggra9302.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 270212..272236 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9302.t1.exon1	Ggra9302.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 270212..272236 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9302.t1.start1	Ggra9302.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 272234..272236 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9302.t1	Ggra9302.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 270212..272236 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:270212..272236-
coding sequence from alignment at tig00000863_pilon:270212..272236-

mRNA sequence

>Ggra9302.t1 ID=Ggra9302.t1|Name=Ggra9302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MNKSQQNGSPSLPRRIPPKSLIICLDGFIRVRLQASIVDSEQLFFLVPRG
QMERVIDTLQVSDSRGTTPRITFPSSSFSPNKLNIRAEDAWRDLVHEQQG
AYVQLFMANDCAEGHLIGLRNHTAQKGAKSSVLLLRDSQVSAYDIETVTS
ISFRNSSASAQLKKYTTSKEFDMDTKECYRITVATNGSGPGIVSVSYSQN
VSGTPFSISYSASMPEGVSAYGIFPKMLLKCFATISNPLSCDLEDVEVTL
QRKIYPSNPNQDMYKDAAEEDFVSGKSESSSEREELTRTAESDVDKIFET
SSTYTSQASIEGNNDSSRTEFAKTLLSLKEGECARVPLFETHCEGGLVHF
YSSRSERCGLGFFIRNTSGRHLDQGHGQFCSHEIESTCWIFLSFLRTGES
YLSVFRKSTGIRGKSTSESVMEKVIAYSKVGNKLLATVMFRRTVQYVLHN
LTGRDVDILVLHRTRQSSRAEVESDAKWCKNLKVVGGAEQESKPVVIQPY
PGTDSANRTMALFQGRASSKERCSLVVVEKVTKDVEIPLLDNVSVKRIAN
LEKNNMIAKRTSERLYKILQVERKIELLSRKRGLHRRRLETLSDHQYTEA
EKVEEENEKPGSNEQDEEHAYDSDRTNYMRAVSRCETEMTEIQEILDDID
RKLICLKHELKAKKKSLTENQSLE*

spliced messenger RNA

>Ggra9302.t1 ID=Ggra9302.t1|Name=Ggra9302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000863_pilon:270212..272236- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGTCTCAGCAAAACGGCTCTCCGTCCCTTCCGAGGCGCATTCC
GCCCAAGTCTCTCATCATCTGCCTCGATGGGTTCATTCGAGTACGGCTGC
AAGCTTCTATCGTTGATTCTGAACAGCTCTTCTTCCTCGTGCCCCGTGGA
CAGATGGAGCGTGTAATCGACACACTGCAAGTTTCGGATAGTCGAGGAAC
CACTCCACGCATCACTTTTCCGTCCTCTTCATTCTCTCCAAACAAACTTA
ACATTCGAGCAGAAGACGCTTGGAGAGATCTGGTCCACGAGCAGCAGGGG
GCTTACGTTCAGCTTTTCATGGCAAATGACTGCGCCGAGGGTCACCTGAT
CGGACTTAGGAATCACACCGCACAAAAGGGCGCCAAGTCCAGCGTACTTT
TGCTTCGTGACTCGCAGGTCTCTGCTTACGACATCGAAACCGTTACCTCC
ATTAGCTTTAGGAACAGTTCCGCGTCTGCACAGCTGAAAAAGTATACCAC
ATCGAAAGAGTTTGATATGGATACGAAGGAATGCTACCGTATTACAGTTG
CTACCAATGGCTCTGGGCCCGGCATTGTTAGCGTTTCGTATTCGCAAAAT
GTGAGCGGGACTCCGTTCAGTATCTCGTACTCGGCCTCTATGCCGGAAGG
AGTTTCGGCCTATGGAATCTTTCCCAAGATGCTCCTCAAGTGCTTTGCAA
CAATTTCTAACCCTCTGTCTTGTGACTTGGAGGATGTGGAAGTAACGCTT
CAAAGGAAAATTTACCCGAGCAATCCAAACCAAGACATGTACAAAGATGC
GGCAGAGGAAGATTTTGTCTCGGGCAAGAGCGAAAGCTCAAGTGAAAGGG
AAGAGCTGACGAGAACAGCTGAGTCTGACGTCGACAAAATCTTTGAAACT
TCCAGCACCTACACTTCTCAAGCGTCAATCGAAGGAAACAATGACTCTTC
CCGAACAGAGTTCGCTAAAACTTTGTTGTCGTTGAAAGAGGGCGAATGTG
CAAGAGTTCCTTTGTTCGAAACGCATTGCGAAGGTGGCCTGGTTCACTTC
TATAGCTCGAGAAGTGAACGATGTGGGTTGGGTTTTTTTATTCGCAATAC
ATCTGGGAGACATCTGGACCAGGGTCATGGACAGTTTTGCTCCCATGAAA
TTGAATCAACGTGTTGGATCTTCTTAAGCTTCCTCAGGACGGGGGAATCA
TACCTGTCCGTGTTTAGAAAGTCTACTGGTATCCGTGGAAAGTCCACATC
GGAATCTGTCATGGAGAAAGTTATTGCATACTCAAAGGTTGGCAACAAGT
TGCTTGCCACAGTCATGTTCCGCAGGACTGTGCAATACGTACTTCACAAT
TTAACAGGTCGAGATGTGGACATTTTGGTTCTTCACCGGACCAGACAAAG
CTCTCGTGCAGAAGTTGAGAGCGACGCAAAATGGTGCAAAAACCTGAAAG
TGGTGGGAGGTGCTGAACAAGAAAGCAAACCAGTTGTTATACAGCCATAT
CCTGGCACTGATAGTGCAAATAGAACTATGGCTCTTTTTCAAGGTCGAGC
AAGTTCTAAAGAGCGATGTAGCCTGGTAGTAGTTGAGAAGGTAACAAAGG
ATGTTGAAATCCCTTTATTGGATAATGTCTCGGTGAAACGCATTGCGAAC
TTGGAAAAGAACAACATGATTGCGAAAAGAACAAGCGAACGGCTGTACAA
AATTCTCCAAGTTGAAAGAAAAATCGAGTTGCTTTCGAGAAAGAGGGGTT
TGCATCGAAGACGTCTAGAAACTTTGAGCGATCATCAATACACGGAGGCC
GAAAAGGTAGAGGAAGAAAATGAGAAGCCGGGCTCCAACGAACAAGATGA
AGAACATGCTTACGACAGTGACCGTACTAATTACATGCGTGCTGTTTCGC
GCTGCGAGACGGAAATGACGGAGATTCAAGAAATTCTGGACGACATTGAC
CGCAAGCTGATCTGTTTGAAGCACGAGTTAAAGGCAAAGAAGAAGTCCCT
GACCGAGAATCAGTCATTAGAATGA

protein sequence of Ggra9302.t1

>Ggra9302.t1 ID=Ggra9302.t1|Name=Ggra9302.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MNKSQQNGSPSLPRRIPPKSLIICLDGFIRVRLQASIVDSEQLFFLVPRG
QMERVIDTLQVSDSRGTTPRITFPSSSFSPNKLNIRAEDAWRDLVHEQQG
AYVQLFMANDCAEGHLIGLRNHTAQKGAKSSVLLLRDSQVSAYDIETVTS
ISFRNSSASAQLKKYTTSKEFDMDTKECYRITVATNGSGPGIVSVSYSQN
VSGTPFSISYSASMPEGVSAYGIFPKMLLKCFATISNPLSCDLEDVEVTL
QRKIYPSNPNQDMYKDAAEEDFVSGKSESSSEREELTRTAESDVDKIFET
SSTYTSQASIEGNNDSSRTEFAKTLLSLKEGECARVPLFETHCEGGLVHF
YSSRSERCGLGFFIRNTSGRHLDQGHGQFCSHEIESTCWIFLSFLRTGES
YLSVFRKSTGIRGKSTSESVMEKVIAYSKVGNKLLATVMFRRTVQYVLHN
LTGRDVDILVLHRTRQSSRAEVESDAKWCKNLKVVGGAEQESKPVVIQPY
PGTDSANRTMALFQGRASSKERCSLVVVEKVTKDVEIPLLDNVSVKRIAN
LEKNNMIAKRTSERLYKILQVERKIELLSRKRGLHRRRLETLSDHQYTEA
EKVEEENEKPGSNEQDEEHAYDSDRTNYMRAVSRCETEMTEIQEILDDID
RKLICLKHELKAKKKSLTENQSLE*

mRNA from alignment at tig00000863_pilon:270212..272236-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9302.t1 ID=Ggra9302.t1|Name=Ggra9302.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000863_pilon:270212..272236- (Gracilaria gracilis GNS1m male)
ATGAACAAGTCTCAGCAAAACGGCTCTCCGTCCCTTCCGAGGCGCATTCC
GCCCAAGTCTCTCATCATCTGCCTCGATGGGTTCATTCGAGTACGGCTGC
AAGCTTCTATCGTTGATTCTGAACAGCTCTTCTTCCTCGTGCCCCGTGGA
CAGATGGAGCGTGTAATCGACACACTGCAAGTTTCGGATAGTCGAGGAAC
CACTCCACGCATCACTTTTCCGTCCTCTTCATTCTCTCCAAACAAACTTA
ACATTCGAGCAGAAGACGCTTGGAGAGATCTGGTCCACGAGCAGCAGGGG
GCTTACGTTCAGCTTTTCATGGCAAATGACTGCGCCGAGGGTCACCTGAT
CGGACTTAGGAATCACACCGCACAAAAGGGCGCCAAGTCCAGCGTACTTT
TGCTTCGTGACTCGCAGGTCTCTGCTTACGACATCGAAACCGTTACCTCC
ATTAGCTTTAGGAACAGTTCCGCGTCTGCACAGCTGAAAAAGTATACCAC
ATCGAAAGAGTTTGATATGGATACGAAGGAATGCTACCGTATTACAGTTG
CTACCAATGGCTCTGGGCCCGGCATTGTTAGCGTTTCGTATTCGCAAAAT
GTGAGCGGGACTCCGTTCAGTATCTCGTACTCGGCCTCTATGCCGGAAGG
AGTTTCGGCCTATGGAATCTTTCCCAAGATGCTCCTCAAGTGCTTTGCAA
CAATTTCTAACCCTCTGTCTTGTGACTTGGAGGATGTGGAAGTAACGCTT
CAAAGGAAAATTTACCCGAGCAATCCAAACCAAGACATGTACAAAGATGC
GGCAGAGGAAGATTTTGTCTCGGGCAAGAGCGAAAGCTCAAGTGAAAGGG
AAGAGCTGACGAGAACAGCTGAGTCTGACGTCGACAAAATCTTTGAAACT
TCCAGCACCTACACTTCTCAAGCGTCAATCGAAGGAAACAATGACTCTTC
CCGAACAGAGTTCGCTAAAACTTTGTTGTCGTTGAAAGAGGGCGAATGTG
CAAGAGTTCCTTTGTTCGAAACGCATTGCGAAGGTGGCCTGGTTCACTTC
TATAGCTCGAGAAGTGAACGATGTGGGTTGGGTTTTTTTATTCGCAATAC
ATCTGGGAGACATCTGGACCAGGGTCATGGACAGTTTTGCTCCCATGAAA
TTGAATCAACGTGTTGGATCTTCTTAAGCTTCCTCAGGACGGGGGAATCA
TACCTGTCCGTGTTTAGAAAGTCTACTGGTATCCGTGGAAAGTCCACATC
GGAATCTGTCATGGAGAAAGTTATTGCATACTCAAAGGTTGGCAACAAGT
TGCTTGCCACAGTCATGTTCCGCAGGACTGTGCAATACGTACTTCACAAT
TTAACAGGTCGAGATGTGGACATTTTGGTTCTTCACCGGACCAGACAAAG
CTCTCGTGCAGAAGTTGAGAGCGACGCAAAATGGTGCAAAAACCTGAAAG
TGGTGGGAGGTGCTGAACAAGAAAGCAAACCAGTTGTTATACAGCCATAT
CCTGGCACTGATAGTGCAAATAGAACTATGGCTCTTTTTCAAGGTCGAGC
AAGTTCTAAAGAGCGATGTAGCCTGGTAGTAGTTGAGAAGGTAACAAAGG
ATGTTGAAATCCCTTTATTGGATAATGTCTCGGTGAAACGCATTGCGAAC
TTGGAAAAGAACAACATGATTGCGAAAAGAACAAGCGAACGGCTGTACAA
AATTCTCCAAGTTGAAAGAAAAATCGAGTTGCTTTCGAGAAAGAGGGGTT
TGCATCGAAGACGTCTAGAAACTTTGAGCGATCATCAATACACGGAGGCC
GAAAAGGTAGAGGAAGAAAATGAGAAGCCGGGCTCCAACGAACAAGATGA
AGAACATGCTTACGACAGTGACCGTACTAATTACATGCGTGCTGTTTCGC
GCTGCGAGACGGAAATGACGGAGATTCAAGAAATTCTGGACGACATTGAC
CGCAAGCTGATCTGTTTGAAGCACGAGTTAAAGGCAAAGAAGAAGTCCCT
GACCGAGAATCAGTCATTAGAATGA

Coding sequence (CDS) from alignment at tig00000863_pilon:270212..272236-

>Ggra9302.t1 ID=Ggra9302.t1|Name=Ggra9302.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000863_pilon:270212..272236- (Gracilaria gracilis GNS1m male)
ATGAACAAGTCTCAGCAAAACGGCTCTCCGTCCCTTCCGAGGCGCATTCC
GCCCAAGTCTCTCATCATCTGCCTCGATGGGTTCATTCGAGTACGGCTGC
AAGCTTCTATCGTTGATTCTGAACAGCTCTTCTTCCTCGTGCCCCGTGGA
CAGATGGAGCGTGTAATCGACACACTGCAAGTTTCGGATAGTCGAGGAAC
CACTCCACGCATCACTTTTCCGTCCTCTTCATTCTCTCCAAACAAACTTA
ACATTCGAGCAGAAGACGCTTGGAGAGATCTGGTCCACGAGCAGCAGGGG
GCTTACGTTCAGCTTTTCATGGCAAATGACTGCGCCGAGGGTCACCTGAT
CGGACTTAGGAATCACACCGCACAAAAGGGCGCCAAGTCCAGCGTACTTT
TGCTTCGTGACTCGCAGGTCTCTGCTTACGACATCGAAACCGTTACCTCC
ATTAGCTTTAGGAACAGTTCCGCGTCTGCACAGCTGAAAAAGTATACCAC
ATCGAAAGAGTTTGATATGGATACGAAGGAATGCTACCGTATTACAGTTG
CTACCAATGGCTCTGGGCCCGGCATTGTTAGCGTTTCGTATTCGCAAAAT
GTGAGCGGGACTCCGTTCAGTATCTCGTACTCGGCCTCTATGCCGGAAGG
AGTTTCGGCCTATGGAATCTTTCCCAAGATGCTCCTCAAGTGCTTTGCAA
CAATTTCTAACCCTCTGTCTTGTGACTTGGAGGATGTGGAAGTAACGCTT
CAAAGGAAAATTTACCCGAGCAATCCAAACCAAGACATGTACAAAGATGC
GGCAGAGGAAGATTTTGTCTCGGGCAAGAGCGAAAGCTCAAGTGAAAGGG
AAGAGCTGACGAGAACAGCTGAGTCTGACGTCGACAAAATCTTTGAAACT
TCCAGCACCTACACTTCTCAAGCGTCAATCGAAGGAAACAATGACTCTTC
CCGAACAGAGTTCGCTAAAACTTTGTTGTCGTTGAAAGAGGGCGAATGTG
CAAGAGTTCCTTTGTTCGAAACGCATTGCGAAGGTGGCCTGGTTCACTTC
TATAGCTCGAGAAGTGAACGATGTGGGTTGGGTTTTTTTATTCGCAATAC
ATCTGGGAGACATCTGGACCAGGGTCATGGACAGTTTTGCTCCCATGAAA
TTGAATCAACGTGTTGGATCTTCTTAAGCTTCCTCAGGACGGGGGAATCA
TACCTGTCCGTGTTTAGAAAGTCTACTGGTATCCGTGGAAAGTCCACATC
GGAATCTGTCATGGAGAAAGTTATTGCATACTCAAAGGTTGGCAACAAGT
TGCTTGCCACAGTCATGTTCCGCAGGACTGTGCAATACGTACTTCACAAT
TTAACAGGTCGAGATGTGGACATTTTGGTTCTTCACCGGACCAGACAAAG
CTCTCGTGCAGAAGTTGAGAGCGACGCAAAATGGTGCAAAAACCTGAAAG
TGGTGGGAGGTGCTGAACAAGAAAGCAAACCAGTTGTTATACAGCCATAT
CCTGGCACTGATAGTGCAAATAGAACTATGGCTCTTTTTCAAGGTCGAGC
AAGTTCTAAAGAGCGATGTAGCCTGGTAGTAGTTGAGAAGGTAACAAAGG
ATGTTGAAATCCCTTTATTGGATAATGTCTCGGTGAAACGCATTGCGAAC
TTGGAAAAGAACAACATGATTGCGAAAAGAACAAGCGAACGGCTGTACAA
AATTCTCCAAGTTGAAAGAAAAATCGAGTTGCTTTCGAGAAAGAGGGGTT
TGCATCGAAGACGTCTAGAAACTTTGAGCGATCATCAATACACGGAGGCC
GAAAAGGTAGAGGAAGAAAATGAGAAGCCGGGCTCCAACGAACAAGATGA
AGAACATGCTTACGACAGTGACCGTACTAATTACATGCGTGCTGTTTCGC
GCTGCGAGACGGAAATGACGGAGATTCAAGAAATTCTGGACGACATTGAC
CGCAAGCTGATCTGTTTGAAGCACGAGTTAAAGGCAAAGAAGAAGTCCCT
GACCGAGAATCAGTCATTAGAATGA