Ggra9300.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9300.t1
Unique NameGgra9300.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:140569..143085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9300Ggra9300Gracilaria gracilis GNS1m malegenetig00000863_pilon 140569..143085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1Ggra9300.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 140569..143085 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1.start1Ggra9300.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 140569..140571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1.CDS1Ggra9300.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 140569..140761 +
Ggra9300.t1.CDS2Ggra9300.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 142053..142934 +
Ggra9300.t1.CDS3Ggra9300.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000863_pilon 143063..143085 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1.exon1Ggra9300.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 140569..140761 +
Ggra9300.t1.exon2Ggra9300.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 142053..142934 +
Ggra9300.t1.exon3Ggra9300.t1.exon3Gracilaria gracilis GNS1m maleexontig00000863_pilon 143063..143085 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1.intron1Ggra9300.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 140762..142052 +
Ggra9300.t1.intron2Ggra9300.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000863_pilon 142935..143062 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9300.t1.stop1Ggra9300.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 143083..143085 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9300.t1 ID=Ggra9300.t1|Name=Ggra9300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MSLTLHKNSPAVKLLIKKIKRGTITEAQTPAEVWRSEALFQKHKLPAFRN
RLYKLRHQIQTSNEPNSSFPTWRFIEERVELTISNHHQWIHNLKDTVIEH
DYESLLDHPFQAQTSKQHKAVSSVRRKIIKSITSEVVNLIADPDIFIKSL
AKIVLQKTEVLATKNQTDSFSLMNEALNLRRTGTIANYVNEHLLIPNKQI
MANTPDVQSEQYTVNLNLNGLSADQRFGSQATKILVKALRNTINECQLRL
DEFGVLMKRQIGDAEQSSSTNFRGRETYRGRKRYRRRGRGRGHLQQSDHH
VQDMFTQIVSNINELHADTKPKKPRATRGRPNLSLLEDTVEKEALRAYIA
SASDPSAPRDTTDSN*
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spliced messenger RNA

>Ggra9300.t1 ID=Ggra9300.t1|Name=Ggra9300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000863_pilon:140569..143085+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTTACTCTTCATAAGAACAGCCCAGCTGTCAAGCTTCTAATTAA
GAAGATCAAAAGAGGAACGATCACTGAAGCTCAGACACCTGCCGAAGTTT
GGAGAAGCGAAGCCCTCTTCCAGAAGCATAAGCTGCCTGCTTTTCGCAAT
CGATTGTATAAGCTCCGCCATCAGATACAAACTTCTAATGAACCCAACTC
GTCATTCCCAACATGGCGCTTTATCGAAGAACGCGTAGAACTAACCATAT
CAAATCACCATCAGTGGATTCATAACCTGAAAGACACGGTAATAGAACAT
GACTACGAATCTTTGCTTGACCATCCATTTCAAGCTCAAACCTCTAAGCA
ACACAAAGCTGTCTCTAGTGTTCGTCGTAAGATCATAAAAAGCATCACTT
CCGAAGTGGTCAATTTAATCGCTGACCCAGATATATTCATTAAATCACTA
GCAAAAATTGTTCTGCAGAAAACCGAGGTCCTGGCAACTAAGAACCAAAC
AGACTCTTTCTCTCTCATGAACGAGGCACTCAATCTCAGAAGAACTGGAA
CCATTGCCAACTACGTCAACGAGCATCTACTCATCCCAAACAAGCAAATC
ATGGCCAACACACCTGACGTACAATCCGAACAATACACAGTGAACTTGAA
CTTAAACGGACTTTCAGCTGACCAACGATTTGGATCTCAAGCCACCAAAA
TACTCGTTAAGGCGCTCCGAAACACCATCAATGAGTGCCAGTTACGTCTG
GACGAATTTGGAGTCCTAATGAAACGACAAATCGGAGATGCAGAGCAATC
TAGCAGCACCAATTTCAGAGGCCGTGAAACGTACCGCGGCAGAAAACGCT
ATCGTAGGAGAGGTCGTGGCAGAGGGCATCTACAACAAAGCGACCATCAC
GTTCAGGATATGTTTACCCAGATCGTCTCAAACATTAATGAGCTTCACGC
CGACACCAAACCCAAAAAGCCCCGTGCTACCCGCGGACGCCCAAATTTGT
CTCTTCTGGAGGACACAGTAGAAAAGGAAGCACTGCGAGCCTACATTGCT
AGTGCCTCAGATCCGTCTGCGCCACGGGACACTACGGATTCCAACTAA
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protein sequence of Ggra9300.t1

>Ggra9300.t1 ID=Ggra9300.t1|Name=Ggra9300.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MSLTLHKNSPAVKLLIKKIKRGTITEAQTPAEVWRSEALFQKHKLPAFRN
RLYKLRHQIQTSNEPNSSFPTWRFIEERVELTISNHHQWIHNLKDTVIEH
DYESLLDHPFQAQTSKQHKAVSSVRRKIIKSITSEVVNLIADPDIFIKSL
AKIVLQKTEVLATKNQTDSFSLMNEALNLRRTGTIANYVNEHLLIPNKQI
MANTPDVQSEQYTVNLNLNGLSADQRFGSQATKILVKALRNTINECQLRL
DEFGVLMKRQIGDAEQSSSTNFRGRETYRGRKRYRRRGRGRGHLQQSDHH
VQDMFTQIVSNINELHADTKPKKPRATRGRPNLSLLEDTVEKEALRAYIA
SASDPSAPRDTTDSN*
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mRNA from alignment at tig00000863_pilon:140569..143085+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9300.t1 ID=Ggra9300.t1|Name=Ggra9300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2517bp|location=Sequence derived from alignment at tig00000863_pilon:140569..143085+ (Gracilaria gracilis GNS1m male)
ATGTCCCTTACTCTTCATAAGAACAGCCCAGCTGTCAAGCTTCTAATTAA
GAAGATCAAAAGAGGAACGATCACTGAAGCTCAGACACCTGCCGAAGTTT
GGAGAAGCGAAGCCCTCTTCCAGAAGCATAAGCTGCCTGCTTTTCGCAAT
CGATTGTATAAGCTCCGCCATCAGATACAAACTTCTAATGAACGTACGTT
ATTCTCATTCTATCCAAAAACTATTATTCTCTAACTACTTTATTTCAGTT
CTTGACGAAGACGAAGATGATAAGTTGAATAGAAGATGTACAGAGCAACA
GTTGCGCCCTCGCAAGGCAACCAAAGTCGACGATGAAGAACATGATGCGG
TCGATATTGGAGaggatgactccgtttcatgcgcagatgaatcatccttg
cgcaacatgtttgaaccactgtttttaatttcggactggactgaggccgg
tactatggcaaagcgactgtcattggcaattctgttgcccagcggtgtgg
gtgctggtgacttttctgtttccgttggccaagggggatgccatatagag
cttcttgtctgctggccttctgctctacttcatatggcaactcttcataa
aaagtggcttgtaggcaatgagagtactacgcgtttggagaattaccatc
caaaaatattgggctttgaggcagccctgaaaaagaagaggaagcaagca
acggatattgttgagtcgaaggcaaacattcatcttccctttcaagttga
aacgcacatcgattcgaagcacaacttaggctggattgatggcaatgaac
gaattgtgtatgtagatttgaaagcagctgtcgaagactatgcggttgct
ttggatgcaacagcttttgagcttgtctagactgtgcaaatttataccgg
cgaatcattggagtgaacaataaaactgattgtaatctgattgttacaag
aacccaagaaatatacagttctattatagaaattcggtgagagatagtga
acgaccgtgatcgatatgtCTTCCTATTTGCGTTTTCCCGCGTGTCCCAG
AGGATTTGAAAAAGTACATCCAGATTATTTTACAGTTTTAAGTGTTGCCA
ACAAGCGCCATATGTGCTATTTACCGCTTCTCCCAGTCCGTTCTTCATAG
TTATGGGCCCAAATGAAGAGAACGAGTGGAATTGAACAAAATGTGCGCAT
AGTGTCATGACGCATGGACTACGTGGACACGCAGCGCTCACTTGACTATA
AAACCGAAGCCGACGACGGCCATGCGGAGCCGTCCTCTCTACTATCGCTA
TTATCATCTCAGGTTATGGGACCGAGCACTACCGTGCCAGCGATCAACAC
CTTCTTCAACCTACCGGCCCGCGCCATACGCGCGCATTATTGCAGTACTC
ATTCTATCTGGAGTGAACTATAGAGACAAGCGCAATCTCACGACACACCT
ACAAACCTTCACGAAATAACTCAGTCCTTGACAGCCAACTCGTCATTCCC
AACATGGCGCTTTATCGAAGAACGCGTAGAACTAACCATATCAAATCACC
ATCAGTGGATTCATAACCTGAAAGACACGGTAATAGAACATGACTACGAA
TCTTTGCTTGACCATCCATTTCAAGCTCAAACCTCTAAGCAACACAAAGC
TGTCTCTAGTGTTCGTCGTAAGATCATAAAAAGCATCACTTCCGAAGTGG
TCAATTTAATCGCTGACCCAGATATATTCATTAAATCACTAGCAAAAATT
GTTCTGCAGAAAACCGAGGTCCTGGCAACTAAGAACCAAACAGACTCTTT
CTCTCTCATGAACGAGGCACTCAATCTCAGAAGAACTGGAACCATTGCCA
ACTACGTCAACGAGCATCTACTCATCCCAAACAAGCAAATCATGGCCAAC
ACACCTGACGTACAATCCGAACAATACACAGTGAACTTGAACTTAAACGG
ACTTTCAGCTGACCAACGATTTGGATCTCAAGCCACCAAAATACTCGTTA
AGGCGCTCCGAAACACCATCAATGAGTGCCAGTTACGTCTGGACGAATTT
GGAGTCCTAATGAAACGACAAATCGGAGATGCAGAGCAATCTAGCAGCAC
CAATTTCAGAGGCCGTGAAACGTACCGCGGCAGAAAACGCTATCGTAGGA
GAGGTCGTGGCAGAGGGCATCTACAACAAAGCGACCATCACGTTCAGGAT
ATGTTTACCCAGATCGTCTCAAACATTAATGAGCTTCACGCCGACACCAA
ACCCAAAAAGCCCCGTGCTACCCGCGGACGCCCAAATTTGTCTCTTCTGG
AGGACACAGTAGAAAAGGAAGCACTGCGAGCCTACATTGCTAGTGCCTCA
GATCCGTCTGCGCCACGTAAGTACATTTTGGACTCCGGTGCTCACCCATC
CATTATTCAGCACCCTCTTCCATACATGTCTGACCTCCCACACCCCATAA
TCTCTACCACTGCAACAATCGTCCCTCTCCAGACCACGAAACAGGGGACA
CTACGGATTCCAACTAA
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Coding sequence (CDS) from alignment at tig00000863_pilon:140569..143085+

>Ggra9300.t1 ID=Ggra9300.t1|Name=Ggra9300.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000863_pilon:140569..143085+ (Gracilaria gracilis GNS1m male)
ATGTCCCTTACTCTTCATAAGAACAGCCCAGCTGTCAAGCTTCTAATTAA
GAAGATCAAAAGAGGAACGATCACTGAAGCTCAGACACCTGCCGAAGTTT
GGAGAAGCGAAGCCCTCTTCCAGAAGCATAAGCTGCCTGCTTTTCGCAAT
CGATTGTATAAGCTCCGCCATCAGATACAAACTTCTAATGAACCCAACTC
GTCATTCCCAACATGGCGCTTTATCGAAGAACGCGTAGAACTAACCATAT
CAAATCACCATCAGTGGATTCATAACCTGAAAGACACGGTAATAGAACAT
GACTACGAATCTTTGCTTGACCATCCATTTCAAGCTCAAACCTCTAAGCA
ACACAAAGCTGTCTCTAGTGTTCGTCGTAAGATCATAAAAAGCATCACTT
CCGAAGTGGTCAATTTAATCGCTGACCCAGATATATTCATTAAATCACTA
GCAAAAATTGTTCTGCAGAAAACCGAGGTCCTGGCAACTAAGAACCAAAC
AGACTCTTTCTCTCTCATGAACGAGGCACTCAATCTCAGAAGAACTGGAA
CCATTGCCAACTACGTCAACGAGCATCTACTCATCCCAAACAAGCAAATC
ATGGCCAACACACCTGACGTACAATCCGAACAATACACAGTGAACTTGAA
CTTAAACGGACTTTCAGCTGACCAACGATTTGGATCTCAAGCCACCAAAA
TACTCGTTAAGGCGCTCCGAAACACCATCAATGAGTGCCAGTTACGTCTG
GACGAATTTGGAGTCCTAATGAAACGACAAATCGGAGATGCAGAGCAATC
TAGCAGCACCAATTTCAGAGGCCGTGAAACGTACCGCGGCAGAAAACGCT
ATCGTAGGAGAGGTCGTGGCAGAGGGCATCTACAACAAAGCGACCATCAC
GTTCAGGATATGTTTACCCAGATCGTCTCAAACATTAATGAGCTTCACGC
CGACACCAAACCCAAAAAGCCCCGTGCTACCCGCGGACGCCCAAATTTGT
CTCTTCTGGAGGACACAGTAGAAAAGGAAGCACTGCGAGCCTACATTGCT
AGTGCCTCAGATCCGTCTGCGCCACGGGACACTACGGATTCCAACTAA
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