Ggra9299.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9299.t1
Unique Name	Ggra9299.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:131837..133525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173020.Cha6605_2330
PFAMs	CARDB,PAP2
Max annot lvl	1117\|Cyanobacteria
Evalue	3.55e-96
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1GHH3@1117\|Cyanobacteria
Description	PFAM PAP2 superfamily
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9299	Ggra9299	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 131837..133525 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9299.t1.start1	Ggra9299.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 131837..131839 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9299.t1.CDS1	Ggra9299.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 131837..133525 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9299.t1.exon1	Ggra9299.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 131837..133525 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9299.t1.stop1	Ggra9299.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 133523..133525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9299.t1	Ggra9299.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 131837..133525 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:131837..133525+
coding sequence from alignment at tig00000863_pilon:131837..133525+

mRNA sequence

>Ggra9299.t1 ID=Ggra9299.t1|Name=Ggra9299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MLSCIAWGTPLDTTVRQTVTCTDDSDCIDGFFIPVLTCVDGVCQSINPAL
DALATGPAPGPPISDANAAFATASIPLDAPADPIECASIRDCPSGEVCVG
INPGGICARAEGIIGLSHFIVNLIQEDYTPPSGSEPTPNQGGPTRTSRAM
AIIYLAAHDAFGLLSGAFAPKLPSASDRRSLESEGSNMSRSSSFNILSQA
EFAMQAAGLTAAKLLYPDQASLINAVFRDVTAAGFPAVIRFGERIGRLWF
RIRLSDGSQVKQLDEMFEIGELLRHQPDPNFPVVTGGGMQQNFGRSWGGV
TPFVISDVEIDAFLGPFPDVSTTEYRDNLEEVTIKGQCNDITLPDGTLIR
DIGIFWGYDSALLIGVPPRAYLQVLLAINELNELPLASQIRSLTGVSVAM
ADAGIAAWFWKFFYDLWRPTIGVREDPIAPEPTWNPRGIPQSNVFSDPPP
PFCVGLNPNFPAYPSGHSSFGTAAFVTIAKLLSKDPKDITVTFTSDEFNG
RTVEGTTGKTRRVFTQTITLEDAIQQNKDSRVFLGVHWRFDSEGGEIVGD
QVAEIAATAFQF*

spliced messenger RNA

>Ggra9299.t1 ID=Ggra9299.t1|Name=Ggra9299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000863_pilon:131837..133525+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCTTGCATCGCATGGGGCACGCCGCTCGATACAACCGTCCGCCA
GACTGTAACCTGTACCGATGACTCCGACTGTATCGACGGTTTCTTTATTC
CCGTGCTCACATGTGTGGATGGTGTCTGTCAGTCCATCAATCCGGCGTTG
GATGCTCTCGCGACCGGCCCTGCGCCTGGCCCTCCAATCTCAGACGCAAA
TGCGGCGTTCGCGACAGCCTCTATTCCTTTAGATGCTCCAGCGGATCCCA
TTGAGTGCGCGTCCATCCGAGACTGTCCGTCGGGTGAAGTTTGCGTTGGA
ATTAATCCAGGTGGTATTTGTGCTCGTGCAGAAGGGATTATAGGCCTTTC
TCATTTCATCGTGAATCTCATCCAAGAAGACTATACTCCTCCCTCTGGTT
CTGAACCCACCCCAAATCAGGGAGGCCCCACTCGAACGTCTCGTGCTATG
GCCATCATTTATCTTGCTGCTCATGATGCGTTCGGTCTCCTCAGTGGCGC
ATTTGCTCCCAAGTTGCCCAGCGCATCCGATCGTAGGTCCCTGGAATCTG
AAGGTTCAAACATGTCACGTTCATCGAGTTTTAACATTCTCAGCCAGGCT
GAGTTCGCTATGCAAGCTGCTGGCCTCACAGCAGCAAAATTGTTGTACCC
AGATCAGGCTTCGCTTATTAATGCAGTGTTCCGCGACGTGACAGCTGCAG
GTTTTCCTGCCGTCATCAGATTTGGAGAACGAATAGGGAGACTTTGGTTT
CGCATTCGCCTAAGCGACGGATCTCAGGTCAAACAGCTAGATGAGATGTT
TGAGATTGGAGAGCTTTTACGCCATCAACCGGATCCAAACTTCCCAGTTG
TCACAGGCGGTGGAATGCAACAGAACTTTGGAAGATCTTGGGGTGGTGTG
ACGCCGTTTGTTATCAGCGATGTTGAAATTGATGCTTTCTTGGGGCCTTT
CCCAGACGTTAGCACTACGGAATACCGTGACAATCTGGAAGAAGTTACAA
TCAAAGGACAATGCAATGATATTACACTTCCTGATGGTACTTTAATACGG
GACATCGGTATATTTTGGGGCTACGATAGTGCATTGCTAATTGGGGTGCC
ACCGCGTGCATATCTGCAAGTCTTGTTGGCCATCAATGAATTGAACGAGC
TTCCTTTGGCAAGTCAAATTCGATCACTGACAGGAGTAAGTGTAGCTATG
GCGGACGCTGGAATTGCTGCCTGGTTCTGGAAATTCTTCTACGATTTGTG
GCGTCCTACAATTGGAGTCCGTGAAGACCCAATCGCTCCCGAACCCACGT
GGAATCCTCGAGGAATCCCACAGAGCAACGTCTTCTCGGATCCTCCCCCA
CCCTTTTGTGTTGGTTTAAACCCGAATTTCCCAGCATATCCTTCGGGGCA
TTCGTCATTTGGGACAGCCGCCTTTGTCACGATTGCTAAGTTGCTTTCAA
AGGATCCCAAGGACATTACTGTTACTTTCACCTCTGATGAGTTTAACGGT
AGGACTGTGGAGGGTACTACAGGAAAAACTCGTCGCGTGTTTACGCAGAC
TATAACACTTGAGGATGCCATTCAACAGAACAAGGACAGTCGTGTATTCC
TGGGTGTGCACTGGAGATTTGACTCAGAAGGTGGTGAGATTGTCGGCGAT
CAGGTGGCAGAAATTGCTGCGACAGCATTCCAATTTTAA

protein sequence of Ggra9299.t1

>Ggra9299.t1 ID=Ggra9299.t1|Name=Ggra9299.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MLSCIAWGTPLDTTVRQTVTCTDDSDCIDGFFIPVLTCVDGVCQSINPAL
DALATGPAPGPPISDANAAFATASIPLDAPADPIECASIRDCPSGEVCVG
INPGGICARAEGIIGLSHFIVNLIQEDYTPPSGSEPTPNQGGPTRTSRAM
AIIYLAAHDAFGLLSGAFAPKLPSASDRRSLESEGSNMSRSSSFNILSQA
EFAMQAAGLTAAKLLYPDQASLINAVFRDVTAAGFPAVIRFGERIGRLWF
RIRLSDGSQVKQLDEMFEIGELLRHQPDPNFPVVTGGGMQQNFGRSWGGV
TPFVISDVEIDAFLGPFPDVSTTEYRDNLEEVTIKGQCNDITLPDGTLIR
DIGIFWGYDSALLIGVPPRAYLQVLLAINELNELPLASQIRSLTGVSVAM
ADAGIAAWFWKFFYDLWRPTIGVREDPIAPEPTWNPRGIPQSNVFSDPPP
PFCVGLNPNFPAYPSGHSSFGTAAFVTIAKLLSKDPKDITVTFTSDEFNG
RTVEGTTGKTRRVFTQTITLEDAIQQNKDSRVFLGVHWRFDSEGGEIVGD
QVAEIAATAFQF*

mRNA from alignment at tig00000863_pilon:131837..133525+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9299.t1 ID=Ggra9299.t1|Name=Ggra9299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000863_pilon:131837..133525+ (Gracilaria gracilis GNS1m male)
ATGCTCTCTTGCATCGCATGGGGCACGCCGCTCGATACAACCGTCCGCCA
GACTGTAACCTGTACCGATGACTCCGACTGTATCGACGGTTTCTTTATTC
CCGTGCTCACATGTGTGGATGGTGTCTGTCAGTCCATCAATCCGGCGTTG
GATGCTCTCGCGACCGGCCCTGCGCCTGGCCCTCCAATCTCAGACGCAAA
TGCGGCGTTCGCGACAGCCTCTATTCCTTTAGATGCTCCAGCGGATCCCA
TTGAGTGCGCGTCCATCCGAGACTGTCCGTCGGGTGAAGTTTGCGTTGGA
ATTAATCCAGGTGGTATTTGTGCTCGTGCAGAAGGGATTATAGGCCTTTC
TCATTTCATCGTGAATCTCATCCAAGAAGACTATACTCCTCCCTCTGGTT
CTGAACCCACCCCAAATCAGGGAGGCCCCACTCGAACGTCTCGTGCTATG
GCCATCATTTATCTTGCTGCTCATGATGCGTTCGGTCTCCTCAGTGGCGC
ATTTGCTCCCAAGTTGCCCAGCGCATCCGATCGTAGGTCCCTGGAATCTG
AAGGTTCAAACATGTCACGTTCATCGAGTTTTAACATTCTCAGCCAGGCT
GAGTTCGCTATGCAAGCTGCTGGCCTCACAGCAGCAAAATTGTTGTACCC
AGATCAGGCTTCGCTTATTAATGCAGTGTTCCGCGACGTGACAGCTGCAG
GTTTTCCTGCCGTCATCAGATTTGGAGAACGAATAGGGAGACTTTGGTTT
CGCATTCGCCTAAGCGACGGATCTCAGGTCAAACAGCTAGATGAGATGTT
TGAGATTGGAGAGCTTTTACGCCATCAACCGGATCCAAACTTCCCAGTTG
TCACAGGCGGTGGAATGCAACAGAACTTTGGAAGATCTTGGGGTGGTGTG
ACGCCGTTTGTTATCAGCGATGTTGAAATTGATGCTTTCTTGGGGCCTTT
CCCAGACGTTAGCACTACGGAATACCGTGACAATCTGGAAGAAGTTACAA
TCAAAGGACAATGCAATGATATTACACTTCCTGATGGTACTTTAATACGG
GACATCGGTATATTTTGGGGCTACGATAGTGCATTGCTAATTGGGGTGCC
ACCGCGTGCATATCTGCAAGTCTTGTTGGCCATCAATGAATTGAACGAGC
TTCCTTTGGCAAGTCAAATTCGATCACTGACAGGAGTAAGTGTAGCTATG
GCGGACGCTGGAATTGCTGCCTGGTTCTGGAAATTCTTCTACGATTTGTG
GCGTCCTACAATTGGAGTCCGTGAAGACCCAATCGCTCCCGAACCCACGT
GGAATCCTCGAGGAATCCCACAGAGCAACGTCTTCTCGGATCCTCCCCCA
CCCTTTTGTGTTGGTTTAAACCCGAATTTCCCAGCATATCCTTCGGGGCA
TTCGTCATTTGGGACAGCCGCCTTTGTCACGATTGCTAAGTTGCTTTCAA
AGGATCCCAAGGACATTACTGTTACTTTCACCTCTGATGAGTTTAACGGT
AGGACTGTGGAGGGTACTACAGGAAAAACTCGTCGCGTGTTTACGCAGAC
TATAACACTTGAGGATGCCATTCAACAGAACAAGGACAGTCGTGTATTCC
TGGGTGTGCACTGGAGATTTGACTCAGAAGGTGGTGAGATTGTCGGCGAT
CAGGTGGCAGAAATTGCTGCGACAGCATTCCAATTTTAA

Coding sequence (CDS) from alignment at tig00000863_pilon:131837..133525+

>Ggra9299.t1 ID=Ggra9299.t1|Name=Ggra9299.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000863_pilon:131837..133525+ (Gracilaria gracilis GNS1m male)
ATGCTCTCTTGCATCGCATGGGGCACGCCGCTCGATACAACCGTCCGCCA
GACTGTAACCTGTACCGATGACTCCGACTGTATCGACGGTTTCTTTATTC
CCGTGCTCACATGTGTGGATGGTGTCTGTCAGTCCATCAATCCGGCGTTG
GATGCTCTCGCGACCGGCCCTGCGCCTGGCCCTCCAATCTCAGACGCAAA
TGCGGCGTTCGCGACAGCCTCTATTCCTTTAGATGCTCCAGCGGATCCCA
TTGAGTGCGCGTCCATCCGAGACTGTCCGTCGGGTGAAGTTTGCGTTGGA
ATTAATCCAGGTGGTATTTGTGCTCGTGCAGAAGGGATTATAGGCCTTTC
TCATTTCATCGTGAATCTCATCCAAGAAGACTATACTCCTCCCTCTGGTT
CTGAACCCACCCCAAATCAGGGAGGCCCCACTCGAACGTCTCGTGCTATG
GCCATCATTTATCTTGCTGCTCATGATGCGTTCGGTCTCCTCAGTGGCGC
ATTTGCTCCCAAGTTGCCCAGCGCATCCGATCGTAGGTCCCTGGAATCTG
AAGGTTCAAACATGTCACGTTCATCGAGTTTTAACATTCTCAGCCAGGCT
GAGTTCGCTATGCAAGCTGCTGGCCTCACAGCAGCAAAATTGTTGTACCC
AGATCAGGCTTCGCTTATTAATGCAGTGTTCCGCGACGTGACAGCTGCAG
GTTTTCCTGCCGTCATCAGATTTGGAGAACGAATAGGGAGACTTTGGTTT
CGCATTCGCCTAAGCGACGGATCTCAGGTCAAACAGCTAGATGAGATGTT
TGAGATTGGAGAGCTTTTACGCCATCAACCGGATCCAAACTTCCCAGTTG
TCACAGGCGGTGGAATGCAACAGAACTTTGGAAGATCTTGGGGTGGTGTG
ACGCCGTTTGTTATCAGCGATGTTGAAATTGATGCTTTCTTGGGGCCTTT
CCCAGACGTTAGCACTACGGAATACCGTGACAATCTGGAAGAAGTTACAA
TCAAAGGACAATGCAATGATATTACACTTCCTGATGGTACTTTAATACGG
GACATCGGTATATTTTGGGGCTACGATAGTGCATTGCTAATTGGGGTGCC
ACCGCGTGCATATCTGCAAGTCTTGTTGGCCATCAATGAATTGAACGAGC
TTCCTTTGGCAAGTCAAATTCGATCACTGACAGGAGTAAGTGTAGCTATG
GCGGACGCTGGAATTGCTGCCTGGTTCTGGAAATTCTTCTACGATTTGTG
GCGTCCTACAATTGGAGTCCGTGAAGACCCAATCGCTCCCGAACCCACGT
GGAATCCTCGAGGAATCCCACAGAGCAACGTCTTCTCGGATCCTCCCCCA
CCCTTTTGTGTTGGTTTAAACCCGAATTTCCCAGCATATCCTTCGGGGCA
TTCGTCATTTGGGACAGCCGCCTTTGTCACGATTGCTAAGTTGCTTTCAA
AGGATCCCAAGGACATTACTGTTACTTTCACCTCTGATGAGTTTAACGGT
AGGACTGTGGAGGGTACTACAGGAAAAACTCGTCGCGTGTTTACGCAGAC
TATAACACTTGAGGATGCCATTCAACAGAACAAGGACAGTCGTGTATTCC
TGGGTGTGCACTGGAGATTTGACTCAGAAGGTGGTGAGATTGTCGGCGAT
CAGGTGGCAGAAATTGCTGCGACAGCATTCCAATTTTAA