Ggra9293.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9293.t1
Unique NameGgra9293.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000190_piloncontigtig00000190_pilon:104134..107955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9293Ggra9293Gracilaria gracilis GNS1m malegenetig00000190_pilon 104134..107955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1Ggra9293.t1Gracilaria gracilis GNS1m malepolypeptidetig00000190_pilon 104134..107955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1.stop1Ggra9293.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000190_pilon 104134..104136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1.CDS1Ggra9293.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000190_pilon 104134..104411 -
Ggra9293.t1.CDS2Ggra9293.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000190_pilon 107157..107510 -
Ggra9293.t1.CDS3Ggra9293.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000190_pilon 107643..107955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1.exon1Ggra9293.t1.exon1Gracilaria gracilis GNS1m maleexontig00000190_pilon 104134..104411 -
Ggra9293.t1.exon2Ggra9293.t1.exon2Gracilaria gracilis GNS1m maleexontig00000190_pilon 107157..107510 -
Ggra9293.t1.exon3Ggra9293.t1.exon3Gracilaria gracilis GNS1m maleexontig00000190_pilon 107643..107955 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1.intron1Ggra9293.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000190_pilon 104412..107156 -
Ggra9293.t1.intron2Ggra9293.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000190_pilon 107511..107642 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9293.t1.start1Ggra9293.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000190_pilon 107953..107955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9293.t1 ID=Ggra9293.t1|Name=Ggra9293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MLYIGSGSEFKRIELDAKLTREAFWKIIEDRFCDVGESSKEDSSSYLDNV
NSDERPSISGEAAVLKTQYATARTLFTKVLSKWSVSGQNDPARICEFLEY
KRDQESGYSNREDVVEVKKSTNRKRKSSNQHQSLADDISKKFDRVESIMK
AQVDLQKAQSDTAFRKPSRSERESQLFDEVLDSVEKWKNAKEGNVEQILR
MGELFLERRKQAFRKYMEGGAGVQVSSTTSSTAHQPPINCPSTSVKNGPE
ASVKTAIGGKLTGFAAGNGDDGINPMFGSLFRKLSPSTNGFIVGDCRADV
YAVFPVFPSPSAPP*
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spliced messenger RNA

>Ggra9293.t1 ID=Ggra9293.t1|Name=Ggra9293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000190_pilon:104134..107955- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTACATAGGTAGTGGATCAGAATTTAAGAGAATCGAGCTGGACGC
GAAGTTAACGAGGGAGGCATTTTGGAAGATCATTGAGGATCGTTTTTGTG
ATGTTGGGGAAAGTTCCAAGGAGGATTCTAGTTCTTATCTCGATAATGTG
AACTCAGATGAACGACCTTCTATCAGTGGAGAAGCCGCAGTGCTTAAGAC
CCAATATGCGACGGCGAGAACGCTGTTTACTAAAGTCTTGAGCAAGTGGT
CTGTTTCAGGCCAGAACGACCCTGCCAGAATATGTGAATTTTTAGAGTAC
AAGAGGGATCAGGAAAGCGGCTACAGCAATAGGGAAGACGTGGTCGAAGT
TAAAAAGTCGACAAACCGGAAGCGAAAGAGCTCCAACCAGCATCAGAGTT
TAGCTGATGACATATCAAAGAAGTTCGACAGAGTGGAAAGCATCATGAAG
GCCCAAGTAGATTTACAGAAAGCACAGAGCGACACGGCGTTTCGGAAGCC
GTCCCGATCAGAAAGGGAGAGCCAGCTATTTGACGAGGTGTTAGACAGCG
TGGAGAAGTGGAAGAACGCGAAGGAAGGTAACGTAGAGCAGATCCTCCGC
ATGGGTGAGCTCTTCTTGGAGCGAAGGAAGCAGGCCTTTAGGAAATACAT
GGAAGGGGGAGCTGGAGTACAGGTCTCATCAACCACTTCATCAACCGCCC
ATCAACCGCCCATCAACTGCCCATCTACCTCTGTTAAGAACGGGCCTGAG
GCCTCTGTTAAGACCGCCATTGGAGGAAAGCTTACGGGATTCGCTGCAGG
GAACGGAGACGATGGTATCAATCCAATGTTCGGATCATTGTTCAGGAAAT
TGTCACCTTCGACAAACGGATTTATAGTCGGTGACTGCCGAGCCGATGTG
TATGCAGTTTTCCCAGTGTTCCCATCACCATCTGCGCCTCCCTGA
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protein sequence of Ggra9293.t1

>Ggra9293.t1 ID=Ggra9293.t1|Name=Ggra9293.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MLYIGSGSEFKRIELDAKLTREAFWKIIEDRFCDVGESSKEDSSSYLDNV
NSDERPSISGEAAVLKTQYATARTLFTKVLSKWSVSGQNDPARICEFLEY
KRDQESGYSNREDVVEVKKSTNRKRKSSNQHQSLADDISKKFDRVESIMK
AQVDLQKAQSDTAFRKPSRSERESQLFDEVLDSVEKWKNAKEGNVEQILR
MGELFLERRKQAFRKYMEGGAGVQVSSTTSSTAHQPPINCPSTSVKNGPE
ASVKTAIGGKLTGFAAGNGDDGINPMFGSLFRKLSPSTNGFIVGDCRADV
YAVFPVFPSPSAPP*
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mRNA from alignment at tig00000190_pilon:104134..107955-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9293.t1 ID=Ggra9293.t1|Name=Ggra9293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3822bp|location=Sequence derived from alignment at tig00000190_pilon:104134..107955- (Gracilaria gracilis GNS1m male)
ATGCTCTACATAGGTAGTGGATCAGAATTTAAGAGAATCGAGCTGGACGC
GAAGTTAACGAGGGAGGCATTTTGGAAGATCATTGAGGATCGTTTTTGTG
ATGTTGGGGAAAGTTCCAAGGAGGATTCTAGTTCTTATCTCGATAATGTG
AACTCAGATGAACGACCTTCTATCAGTGGAGAAGCCGCAGTGCTTAAGAC
CCAATATGCGACGGCGAGAACGCTGTTTACTAAAGTCTTGAGCAAGTGGT
CTGTTTCAGGCCAGAACGACCCTGCCAGAATATGTGAATTTTTAGAGTAC
AAGAGGGATCAGGGTGGGTATAATATGGAATCTAAACGTGTTTTAGTTTT
TTTTGTGGTGTACAGACTTAGAAAAAAGAACGCAGGCACAGACCTGGTTC
AAGCATCTGCTAAGCTCATTGAAGTCGACGGAGACGCGTAAATAGAAAGC
GGCTACAGCAATAGGGAAGACGTGGTCGAAGTTAAAAAGTCGACAAACCG
GAAGCGAAAGAGCTCCAACCAGCATCAGAGTTTAGCTGATGACATATCAA
AGAAGTTCGACAGAGTGGAAAGCATCATGAAGGCCCAAGTAGATTTACAG
AAAGCACAGAGCGACACGGCGTTTCGGAAGCCGTCCCGATCAGAAAGGGA
GAGCCAGCTATTTGACGAGGTGTTAGACAGCGTGGAGAAGTGGAAGAACG
CGAAGGAAGGTAACGTAGAGCAGATCCTCCGCATGGGTGAGCTCTTCTTG
GAGCGAAGGAAGCAGGCCTTTAGGAAATACATGGAAGGGGGAGCTGGAGG
TAAGGAAAGCTGATGAAGTTTGAGAATATCGAGCTAACCGTTCCGTTAAT
ACTTTTCTATGTTTATCTGCTTGTGGGTTTAAATGCACTCTCGTATGTGA
TCGTCGTGCGTGCTTTCAACAACGGCGCAGGGTGGTGGTGGGAACGGTCG
CCTTCCAATATAGTTAAGCTTTCACTTTGTTTGTGAATTTAGTTGTATTA
TCTTATGTGATCGTAGTGCTTTCTCTTAAGAACAGCGCTGGGTGGTGGTG
GGAACGGTCACTTTCTGCAGATAGTAAACTTTCTCTTTGATTTCGTTCCA
CAATTACCTCTCTTTGTTCTTCCCATACAAGGCCGTTCCACCATTTTCTA
TAGAAGCCAAGGTGGTTGCGCCATCACCAAATCATCCCATGAGAACGACT
TATGTTCGGGCCAAATTCGACCAACGGCATGAACATCATAGAATTCTTTC
GTCACCACGATTTGTGTCGAATGAATTCCTGATGCTCATGACCGTTGATC
AAAGTTGGCAAAAAGAGTCAACCAGTTACAGGGTACTAAAGCAGGCACAT
CCTAAACTCTTTCAGTTTTGGGTGTACCTGCTTCAAAATCTTGTAGCTGA
TGAAGTGAAGCGAAATCAGCTGTACCGGAGGCAAGAAGAACATTCATAGG
AAAGTGGGATTTCGCTTACTTGTATGAAGTTATCTAGCGACAGATATTGT
ATATCATAAGGTTTCTTCATGGTAGATATACCTCTTCCACCGTATATAAG
ATTGTGATGTGAAGGAAATATGATGGCGTTATAACTTACTTTGTAGCAGT
CCTCATAACCGTGAATAATTCTATTCAAAGATTTGGTTAGGAGCACCGGG
CACGGGAGGTCTTCGTAAGTCTTCCTTTTTGATGATGTACACCAAAGATT
TTCTCTTCAATGAGATCGTATCACTCGTGGATACGTCTGAGAGGTTCTCA
GTTCATTACTGCTCCTTTCAGCACTCGTACCACGCCTTGACATCGTCGTT
GCGTTGGCAAATCTCATCATGCGAGACATTTTTCTCTCCTCCCTCTTTGA
TATCCACGCAGAAGTTGTAAAGCTTCATACATACGTTAATAATTCTGGAG
CTCACCTGTACACTGTACTGAAGGTAGTTCAAGATACGCCATCTCGCCAC
CAACATTCCAAATGCTTGCTCTACATGCACGCGAACTGATGAAAGGTAGT
AGAGAAAACCGTTCTGCGCCCAAGTGGTCACCTGGGACATCGAGATTGGA
ATAATTACATGCTCCGTGCAAATGTAGGCCTCATCCTCTACGATGCAAAA
CTACAAAGGCAGTCCTTGATCTTCTAGTAGTCTCCACAACTTCGACACAG
CGTGAGCCAGAGAGTCGTTTCTTGACCCAACACATCTGATAGACAAATCC
AGGAACCGATACGAAGAGTCAACGAGCGCTTGTATGGGCAGAGAGTAGTA
GCCCTTCCGACAATAGTATGCAGCGGCATAGCGACACCTCGGTTTTTGGA
TTTCTATTGCTATACCATCAATGGCACCAACACATCCATAGAAAGGACTC
ATGTTCCTTCGGGAGTGCTTGAACCCGAGGGCAAAATCATCGAGATCCCC
GACCGCATTCGGAATTCCGGACAGTTCTAACTTGTTTGATTGCGCGTCGA
ATGTTTCATGTAATACTGCGTACGTCCATGACGCTCCAATTTGAAACCCA
ATCATAATGTCCAGGTAGCTGGATGCAGCCAGCATCCTCAGTGTATTCGC
CAGCCTCATGCGCGAAGAGATAGCCGGACGTCCTGATCTCTCTTCCATTT
CAACGTTCTTCTGTAGAACCGGTTCGACCATAGAGTGAAGCAATTCAAAC
CCATCCTTAGAAATGCGGAATGCATGCTTGAGAGACCGCGACTTTAGCCT
CTCCTCCAAGCTTTAAAATGTCTTGGTGCCCTTAATTAAAGAGATTGCAT
GGGGTTGAATTGGCTTAGCTTTTGCACTCGACTTTAGAATTGAAACGCAA
CTATTTAGAAGAGTGAGATCTACCGACGATTTGAACATAACTGCATTGCT
CTGAACATGGCAGGCAACCATTATTCCAACCAGATTGATGACTAGATAGC
GATTGCAATTCGAAAAAGTATAGAGCCAAACTTTGTTAGCTTACGCACAA
AATAATGTATGGCAATCTACGTGTAGATCACAAGACGATAACCACAAGAT
TAAAATAGTTGTGATGAAATTGAAACGACGAAGACTACGAAAAGAAGAAG
AAATTTGGAGCGCTTAAGCAAAAATCAGAAACAAAGATTAATGCATCAAG
AGAAGCAAAGATGGATAAAAGTTTAAGAATGGTCGTAAGTGAATGGGAGA
ATGCAAGAGCCAAGCAGGTTACGAGGGTACGCTTTTAAAGGGGCAAACAT
TTTTGGAAACTCAAAAACGGGTAAAACTGGAAAACGGATTTCAAATGTAC
TCGAAAGACGAAGCATCAACGTAAATATAATGAAGATCAAAGCGGAGTGA
TTGAAAGGGGAAAGGGAAAGAGACGTGAACTGGATAGAGATCAATGCTGC
ACGTCAGGCGATCAGGGAGGATCAAGGAGGGGCCCCGTCAGTCAGGGAAT
TGGACATAGCCGGAGCTGGAGCTGCATATTATATAGAGATCAAGCTGATC
CAAACAGAATAATAGGGCCCGGTTTTTGTAATTAGCAAACCAGAACCATC
TTACAGATGTTAACTTACTGTGGGCAATATTGAAAATTTCAAAGTACAGG
TCTCATCAACCACTTCATCAACCGCCCATCAACCGCCCATCAACTGCCCA
TCTACCTCTGTTAAGAACGGGCCTGAGGCCTCTGTTAAGACCGCCATTGG
AGGAAAGCTTACGGGATTCGCTGCAGGGAACGGAGACGATGGTATCAATC
CAATGTTCGGATCATTGTTCAGGAAATTGTCACCTTCGACAAACGGATTT
ATAGTCGGTGACTGCCGAGCCGATGTGTATGCAGTTTTCCCAGTGTTCCC
ATCACCATCTGCGCCTCCCTGA
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Coding sequence (CDS) from alignment at tig00000190_pilon:104134..107955-

>Ggra9293.t1 ID=Ggra9293.t1|Name=Ggra9293.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000190_pilon:104134..107955- (Gracilaria gracilis GNS1m male)
ATGCTCTACATAGGTAGTGGATCAGAATTTAAGAGAATCGAGCTGGACGC
GAAGTTAACGAGGGAGGCATTTTGGAAGATCATTGAGGATCGTTTTTGTG
ATGTTGGGGAAAGTTCCAAGGAGGATTCTAGTTCTTATCTCGATAATGTG
AACTCAGATGAACGACCTTCTATCAGTGGAGAAGCCGCAGTGCTTAAGAC
CCAATATGCGACGGCGAGAACGCTGTTTACTAAAGTCTTGAGCAAGTGGT
CTGTTTCAGGCCAGAACGACCCTGCCAGAATATGTGAATTTTTAGAGTAC
AAGAGGGATCAGGAAAGCGGCTACAGCAATAGGGAAGACGTGGTCGAAGT
TAAAAAGTCGACAAACCGGAAGCGAAAGAGCTCCAACCAGCATCAGAGTT
TAGCTGATGACATATCAAAGAAGTTCGACAGAGTGGAAAGCATCATGAAG
GCCCAAGTAGATTTACAGAAAGCACAGAGCGACACGGCGTTTCGGAAGCC
GTCCCGATCAGAAAGGGAGAGCCAGCTATTTGACGAGGTGTTAGACAGCG
TGGAGAAGTGGAAGAACGCGAAGGAAGGTAACGTAGAGCAGATCCTCCGC
ATGGGTGAGCTCTTCTTGGAGCGAAGGAAGCAGGCCTTTAGGAAATACAT
GGAAGGGGGAGCTGGAGTACAGGTCTCATCAACCACTTCATCAACCGCCC
ATCAACCGCCCATCAACTGCCCATCTACCTCTGTTAAGAACGGGCCTGAG
GCCTCTGTTAAGACCGCCATTGGAGGAAAGCTTACGGGATTCGCTGCAGG
GAACGGAGACGATGGTATCAATCCAATGTTCGGATCATTGTTCAGGAAAT
TGTCACCTTCGACAAACGGATTTATAGTCGGTGACTGCCGAGCCGATGTG
TATGCAGTTTTCCCAGTGTTCCCATCACCATCTGCGCCTCCCTGA
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