Ggra9292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9292.t1
Unique NameGgra9292.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000190_piloncontigtig00000190_pilon:95789..97263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9292Ggra9292Gracilaria gracilis GNS1m malegenetig00000190_pilon 95789..97263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1Ggra9292.t1Gracilaria gracilis GNS1m malepolypeptidetig00000190_pilon 95789..97263 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1.start1Ggra9292.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000190_pilon 95789..95791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1.CDS1Ggra9292.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000190_pilon 95789..95838 +
Ggra9292.t1.CDS2Ggra9292.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000190_pilon 95886..97263 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1.exon1Ggra9292.t1.exon1Gracilaria gracilis GNS1m maleexontig00000190_pilon 95789..95838 +
Ggra9292.t1.exon2Ggra9292.t1.exon2Gracilaria gracilis GNS1m maleexontig00000190_pilon 95886..97263 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1.intron1Ggra9292.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000190_pilon 95839..95885 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9292.t1.stop1Ggra9292.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000190_pilon 97261..97263 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9292.t1 ID=Ggra9292.t1|Name=Ggra9292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp
MSIPRMKSIGSLLTLDRDEVSLAHFGSARRRRELDCNNASDGNDSSLVQF
RCGGKRKKSWNFYDSDSSPGSARKRRELDCNNASDGNDSSLVQFRRGGKR
KKSWNFYDSDSSPGSARKRRELDCNNASDGNDSSLVQFRRGGKRVKSGNV
YDSDRYYCSSGGVRPRTKRKLSLDIFHESEENTCRPAKGRLERKKRVISD
APHNLFESSSERRLVMSEGDECEAIDVDCGSQGSDSAEEHPPDHHHGEVI
NLVTDEDADARTESCQGSTPSVEMAWKLCLNQLEQKKPDIFSGAEAKMQI
VSKAQQGQSVYEGIGVTEDNCLGVRAVLAALKKSGGPKTPTRKAEKELVT
TVSQFLRWSVVSGKCSKMNVWKEVALFQSIAKSRLVERFLMYFQKRCEDE
TVRKKVSHQLIFCKAASSSKSHGDIWEISMVLQVVYGKKRMRAACGIQRR
NTQRPFKRPSKRHAGSLVMTKRESR*
back to top

spliced messenger RNA

>Ggra9292.t1 ID=Ggra9292.t1|Name=Ggra9292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000190_pilon:95789..97263+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtccatcccgcgaatgaAGTCTATTGGTTCATTGCTCACGCTAGACCG
GGACGAAGTCTCCCTAGCACACTTTGGATCTGCGAGGAGGAGGAGGGAGC
TGGACTGCAATAATGCCAGTGATGGAAATGACAGCTCTCTTGTTCAATTT
CGATGCGGTGGGAAGAGGAAGAAGAGTTGGAACTTCTACGACTCAGACAG
CTCTCCTGGATCCGCGAGGAAGAGGAGGGAGCTGGACTGCAATAATGCCA
GTGATGGAAATGACAGCTCTCTTGTTCAATTTCGACGCGGTGGGAAGAGG
AAGAAGAGTTGGAACTTCTACGACTCAGACAGCTCTCCTGGATCCGCGAG
GAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGAAATGACAGCT
CTCTTGTTCAATTTCGACGCGGTGGGAAGAGGGTGAAGAGTGGGAACGTC
TACGACTCAGACAGGTACTACTGCTCCTCTGGCGGAGTTAGACCCCGGAC
GAAGAGGAAGCTGAGCTTGGATATTTTCCATGAATCTGAAGAGAACACCT
GCCGACCGGCAAAGGGTCGACTAGAGCGGAAGAAGAGGGTTATCTCTGAT
GCCCCACATAACCTATTTGAATCTTCAAGTGAGAGGAGGTTAGTTATGTC
GGAGGGAGACGAATGCGAAGCGATTGACGTTGATTGCGGGAGCCAAGGCA
GTGATTCAGCTGAAGAGCATCCTCCAGATCACCATCATGGTGAAGTTATC
AATCTTGTGACAGATGAAGATGCTGACGCAAGGACAGAATCTTGTCAAGG
ATCTACGCCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAACTCG
AACAGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAAATGCAAATC
GTCTCCAAAGCACAGCAGGGGCAATCAGTATATGAGGGAATTGGGGTAAC
GGAGGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTTAAAGAAGT
CTGGGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGTGACA
ACTGTTTCTCAGTTTTTGCGTTGGTCCGTAGTGAGCGGGAAGTGCTCCAA
AATGAATGTGTGGAAAGAGGTGGCTCTGTTTCAAAGTATCGCAAAAAGCA
GACTGGTGGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGATGAG
ACTGTGCGGAAGAAAGTGAGTCATCAACTGATCTTTTGCAAGGCTGCAAG
CTCTAGTAAATCGCATGGTGACATTTGGGAGATATCGATGGTACTCCAGG
TTGTATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAACGACGG
AACACTCAGCGGCCTTTCAAGCGCCCATCCAAGCGTCATGCTGGCTCATT
GGTCATGACGAAGAGGGAATCGCGTTGA
back to top

protein sequence of Ggra9292.t1

>Ggra9292.t1 ID=Ggra9292.t1|Name=Ggra9292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MSIPRMKSIGSLLTLDRDEVSLAHFGSARRRRELDCNNASDGNDSSLVQF
RCGGKRKKSWNFYDSDSSPGSARKRRELDCNNASDGNDSSLVQFRRGGKR
KKSWNFYDSDSSPGSARKRRELDCNNASDGNDSSLVQFRRGGKRVKSGNV
YDSDRYYCSSGGVRPRTKRKLSLDIFHESEENTCRPAKGRLERKKRVISD
APHNLFESSSERRLVMSEGDECEAIDVDCGSQGSDSAEEHPPDHHHGEVI
NLVTDEDADARTESCQGSTPSVEMAWKLCLNQLEQKKPDIFSGAEAKMQI
VSKAQQGQSVYEGIGVTEDNCLGVRAVLAALKKSGGPKTPTRKAEKELVT
TVSQFLRWSVVSGKCSKMNVWKEVALFQSIAKSRLVERFLMYFQKRCEDE
TVRKKVSHQLIFCKAASSSKSHGDIWEISMVLQVVYGKKRMRAACGIQRR
NTQRPFKRPSKRHAGSLVMTKRESR*
back to top

mRNA from alignment at tig00000190_pilon:95789..97263+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9292.t1 ID=Ggra9292.t1|Name=Ggra9292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1475bp|location=Sequence derived from alignment at tig00000190_pilon:95789..97263+ (Gracilaria gracilis GNS1m male)
atgtccatcccgcgaatgaAGTCTATTGGTTCATTGCTCACGCTAGACCG
GTGAGAGAGGAGAGGGTGGTCGGGAATAACTTCTATTGTTCGGATAGGGA
CGAAGTCTCCCTAGCACACTTTGGATCTGCGAGGAGGAGGAGGGAGCTGG
ACTGCAATAATGCCAGTGATGGAAATGACAGCTCTCTTGTTCAATTTCGA
TGCGGTGGGAAGAGGAAGAAGAGTTGGAACTTCTACGACTCAGACAGCTC
TCCTGGATCCGCGAGGAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTG
ATGGAAATGACAGCTCTCTTGTTCAATTTCGACGCGGTGGGAAGAGGAAG
AAGAGTTGGAACTTCTACGACTCAGACAGCTCTCCTGGATCCGCGAGGAA
GAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGAAATGACAGCTCTC
TTGTTCAATTTCGACGCGGTGGGAAGAGGGTGAAGAGTGGGAACGTCTAC
GACTCAGACAGGTACTACTGCTCCTCTGGCGGAGTTAGACCCCGGACGAA
GAGGAAGCTGAGCTTGGATATTTTCCATGAATCTGAAGAGAACACCTGCC
GACCGGCAAAGGGTCGACTAGAGCGGAAGAAGAGGGTTATCTCTGATGCC
CCACATAACCTATTTGAATCTTCAAGTGAGAGGAGGTTAGTTATGTCGGA
GGGAGACGAATGCGAAGCGATTGACGTTGATTGCGGGAGCCAAGGCAGTG
ATTCAGCTGAAGAGCATCCTCCAGATCACCATCATGGTGAAGTTATCAAT
CTTGTGACAGATGAAGATGCTGACGCAAGGACAGAATCTTGTCAAGGATC
TACGCCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAACTCGAAC
AGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAAATGCAAATCGTC
TCCAAAGCACAGCAGGGGCAATCAGTATATGAGGGAATTGGGGTAACGGA
GGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTTAAAGAAGTCTG
GGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGTGACAACT
GTTTCTCAGTTTTTGCGTTGGTCCGTAGTGAGCGGGAAGTGCTCCAAAAT
GAATGTGTGGAAAGAGGTGGCTCTGTTTCAAAGTATCGCAAAAAGCAGAC
TGGTGGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGATGAGACT
GTGCGGAAGAAAGTGAGTCATCAACTGATCTTTTGCAAGGCTGCAAGCTC
TAGTAAATCGCATGGTGACATTTGGGAGATATCGATGGTACTCCAGGTTG
TATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAACGACGGAAC
ACTCAGCGGCCTTTCAAGCGCCCATCCAAGCGTCATGCTGGCTCATTGGT
CATGACGAAGAGGGAATCGCGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000190_pilon:95789..97263+

>Ggra9292.t1 ID=Ggra9292.t1|Name=Ggra9292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000190_pilon:95789..97263+ (Gracilaria gracilis GNS1m male)
atgtccatcccgcgaatgaAGTCTATTGGTTCATTGCTCACGCTAGACCG
GGACGAAGTCTCCCTAGCACACTTTGGATCTGCGAGGAGGAGGAGGGAGC
TGGACTGCAATAATGCCAGTGATGGAAATGACAGCTCTCTTGTTCAATTT
CGATGCGGTGGGAAGAGGAAGAAGAGTTGGAACTTCTACGACTCAGACAG
CTCTCCTGGATCCGCGAGGAAGAGGAGGGAGCTGGACTGCAATAATGCCA
GTGATGGAAATGACAGCTCTCTTGTTCAATTTCGACGCGGTGGGAAGAGG
AAGAAGAGTTGGAACTTCTACGACTCAGACAGCTCTCCTGGATCCGCGAG
GAAGAGGAGGGAGCTGGACTGCAATAATGCCAGTGATGGAAATGACAGCT
CTCTTGTTCAATTTCGACGCGGTGGGAAGAGGGTGAAGAGTGGGAACGTC
TACGACTCAGACAGGTACTACTGCTCCTCTGGCGGAGTTAGACCCCGGAC
GAAGAGGAAGCTGAGCTTGGATATTTTCCATGAATCTGAAGAGAACACCT
GCCGACCGGCAAAGGGTCGACTAGAGCGGAAGAAGAGGGTTATCTCTGAT
GCCCCACATAACCTATTTGAATCTTCAAGTGAGAGGAGGTTAGTTATGTC
GGAGGGAGACGAATGCGAAGCGATTGACGTTGATTGCGGGAGCCAAGGCA
GTGATTCAGCTGAAGAGCATCCTCCAGATCACCATCATGGTGAAGTTATC
AATCTTGTGACAGATGAAGATGCTGACGCAAGGACAGAATCTTGTCAAGG
ATCTACGCCTTCCGTGGAAATGGCATGGAAGTTGTGCCTCAATCAACTCG
AACAGAAGAAGCCAGATATCTTCTCGGGAGCCGAAGCAAAAATGCAAATC
GTCTCCAAAGCACAGCAGGGGCAATCAGTATATGAGGGAATTGGGGTAAC
GGAGGACAACTGCCTCGGAGTACGAGCTGTCTTGGCAGCCTTAAAGAAGT
CTGGGGGGCCCAAGACGCCGACGAGAAAGGCGGAAAAGGAGCTTGTGACA
ACTGTTTCTCAGTTTTTGCGTTGGTCCGTAGTGAGCGGGAAGTGCTCCAA
AATGAATGTGTGGAAAGAGGTGGCTCTGTTTCAAAGTATCGCAAAAAGCA
GACTGGTGGAACGTTTCTTGATGTACTTCCAAAAACGTTGCGAAGATGAG
ACTGTGCGGAAGAAAGTGAGTCATCAACTGATCTTTTGCAAGGCTGCAAG
CTCTAGTAAATCGCATGGTGACATTTGGGAGATATCGATGGTACTCCAGG
TTGTATATGGTAAGAAAAGAATGCGTGCAGCCTGCGGAATTCAACGACGG
AACACTCAGCGGCCTTTCAAGCGCCCATCCAAGCGTCATGCTGGCTCATT
GGTCATGACGAAGAGGGAATCGCGTTGA
back to top