Ggra9288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9288.t1
Unique NameGgra9288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000190_piloncontigtig00000190_pilon:67028..68308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9288Ggra9288Gracilaria gracilis GNS1m malegenetig00000190_pilon 67028..68308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1Ggra9288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000190_pilon 67028..68308 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1.stop1Ggra9288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000190_pilon 67028..67030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1.CDS1Ggra9288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000190_pilon 67028..67589 -
Ggra9288.t1.CDS2Ggra9288.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000190_pilon 67659..68308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1.exon1Ggra9288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000190_pilon 67028..67589 -
Ggra9288.t1.exon2Ggra9288.t1.exon2Gracilaria gracilis GNS1m maleexontig00000190_pilon 67659..68308 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1.intron1Ggra9288.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000190_pilon 67590..67658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9288.t1.start1Ggra9288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000190_pilon 68306..68308 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9288.t1 ID=Ggra9288.t1|Name=Ggra9288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MKAKGAVLVDVVSSRLEVVRRVKEELFLSTNPTTIDTLKLLSQRTKEVRN
RNTNETLVEVEGGFLQSKLVLDNKDVRAIVKGSMATDQALVFTLSFLNNW
TPEATSGIHVADPMHTAGWWEKRLTSKCEEKKLRRQVTGSTGYHRRCHEM
MWCSEISLLFLTGSNHWSLAVVYNLSSLLNYFKSYGWRLKPGTVKKKVKA
SIIYLDSLGLDSPHIDLSVLIRKYCGVHVQRDLECGFYASFNASFVSKNL
ALFRNGGTKHIIRDLKTFYATYSFSEYHLLLQNRLRALTAAYTRNLKMVI
RCAANVEDVDDTPGQRQAENQKDCNAETASNGENASSSGVTDNKTRTGFL
HIAREGERLVGDVSDQHLIRQWEECVSKAAALVKEMEGRSPSQRAPSDNV
QHK*
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spliced messenger RNA

>Ggra9288.t1 ID=Ggra9288.t1|Name=Ggra9288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000190_pilon:67028..68308- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCAAAGGGTGCTGTTCTGGTGGATGTTGTATCATCTCGTTTGGA
AGTTGTGCGTCGCGTAAAGGAAGAACTTTTCCTCAGTACCAATCCCACTA
CGATAGACACCCTAAAACTATTGTCTCAGAGGACGAAGGAGGTCAGAAAC
CGAAATACGAACGAGACATTGGTAGAGGTCGAAGGTGGATTCCTGCAGAG
CAAATTGGTGCTGGACAATAAGGACGTCAGGGCAATTGTCAAGGGGAGCA
TGGCCACAGATCAAGCGTTGGTGTTCACACTCTCATTTCTGAATAACTGG
ACTCCAGAGGCAACCAGTGGCATACATGTAGCCGACCCAATGCACACTGC
GGGCTGGTGGGAGAAGCGTCTTACCTCGAAGTGTGAGGAGAAGAAGCTTC
GTCGTCAGGTTACGGGGTCAACTGGTTATCACAGGAGATGCCATGAAATG
ATGTGGTGCTCTGAGATCTCGCTACTCTTCCTAACAGGTAGTAATCATTG
GAGTCTTGCGGTAGTCTACAATCTATCTTCACTGCTGAACTACTTCAAAA
GTTATGGATGGCGATTGAAGCCTGGAACCGTGAAGAAGAAGGTTAAAGCA
TCAATTATATATCTTGACAGCCTGGGTCTGGACAGCCCGCACATTGACTT
ATCCGTTCTAATTCGAAAGTATTGCGGTGTTCATGTCCAGAGAGACCTCG
AGTGTGGCTTTTACGCTAGCTTCAACGCATCATTTGTCTCCAAGAACCTC
GCACTATTTCGCAACGGTGGTACAAAACATATCATCCGTGATCTTAAGAC
ATTCTACGCAACCTATTCGTTTTCCGAGTATCATCTTCTCCTGCAAAATC
GTTTACGTGCACTAACCGCAGCATATACTCGTAATCTCAAGATGGTCATT
CGATGTGCAGCGAACGTTGAAGATGTCGACGACACACCCGGACAACGACA
GGCAGAGAATCAGAAGGACTGTAACGCGGAAACCGCATCAAACGGAGAGA
ACGCGTCTAGCTCTGGAGTTACTGACAACAAGACCCGCACTGGCTTTCTA
CACATCGCTCGAGAAGGAGAAAGACTGGTCGGGGACGTCTCGGACCAACA
CTTGATAAGGCAGTGGGAAGAGTGTGTATCAAAGGCAGCGGCTTTGGTGA
AGGAAATGGAAGGACGTTCTCCGTCACAACGAGCCCCAAGTGACAATGTG
CAACACAAATGA
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protein sequence of Ggra9288.t1

>Ggra9288.t1 ID=Ggra9288.t1|Name=Ggra9288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MKAKGAVLVDVVSSRLEVVRRVKEELFLSTNPTTIDTLKLLSQRTKEVRN
RNTNETLVEVEGGFLQSKLVLDNKDVRAIVKGSMATDQALVFTLSFLNNW
TPEATSGIHVADPMHTAGWWEKRLTSKCEEKKLRRQVTGSTGYHRRCHEM
MWCSEISLLFLTGSNHWSLAVVYNLSSLLNYFKSYGWRLKPGTVKKKVKA
SIIYLDSLGLDSPHIDLSVLIRKYCGVHVQRDLECGFYASFNASFVSKNL
ALFRNGGTKHIIRDLKTFYATYSFSEYHLLLQNRLRALTAAYTRNLKMVI
RCAANVEDVDDTPGQRQAENQKDCNAETASNGENASSSGVTDNKTRTGFL
HIAREGERLVGDVSDQHLIRQWEECVSKAAALVKEMEGRSPSQRAPSDNV
QHK*
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mRNA from alignment at tig00000190_pilon:67028..68308-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9288.t1 ID=Ggra9288.t1|Name=Ggra9288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1281bp|location=Sequence derived from alignment at tig00000190_pilon:67028..68308- (Gracilaria gracilis GNS1m male)
ATGAAAGCAAAGGGTGCTGTTCTGGTGGATGTTGTATCATCTCGTTTGGA
AGTTGTGCGTCGCGTAAAGGAAGAACTTTTCCTCAGTACCAATCCCACTA
CGATAGACACCCTAAAACTATTGTCTCAGAGGACGAAGGAGGTCAGAAAC
CGAAATACGAACGAGACATTGGTAGAGGTCGAAGGTGGATTCCTGCAGAG
CAAATTGGTGCTGGACAATAAGGACGTCAGGGCAATTGTCAAGGGGAGCA
TGGCCACAGATCAAGCGTTGGTGTTCACACTCTCATTTCTGAATAACTGG
ACTCCAGAGGCAACCAGTGGCATACATGTAGCCGACCCAATGCACACTGC
GGGCTGGTGGGAGAAGCGTCTTACCTCGAAGTGTGAGGAGAAGAAGCTTC
GTCGTCAGGTTACGGGGTCAACTGGTTATCACAGGAGATGCCATGAAATG
ATGTGGTGCTCTGAGATCTCGCTACTCTTCCTAACAGGTAGTAATCATTG
GAGTCTTGCGGTAGTCTACAATCTATCTTCACTGCTGAACTACTTCAAAA
GTTATGGATGGCGATTGAAGCCTGGAACCGTGAAGAAGAAGGTTAAAGCA
TCAATTATATATCTTGACAGCCTGGGTCTGGACAGCCCGCACATTGACTT
GTACGACAACATGCTCTTTTACCTTACCGCCTGCTTGCCAAATGTGAACA
TCAATACGGACTAAATTAGATCCGTTCTAATTCGAAAGTATTGCGGTGTT
CATGTCCAGAGAGACCTCGAGTGTGGCTTTTACGCTAGCTTCAACGCATC
ATTTGTCTCCAAGAACCTCGCACTATTTCGCAACGGTGGTACAAAACATA
TCATCCGTGATCTTAAGACATTCTACGCAACCTATTCGTTTTCCGAGTAT
CATCTTCTCCTGCAAAATCGTTTACGTGCACTAACCGCAGCATATACTCG
TAATCTCAAGATGGTCATTCGATGTGCAGCGAACGTTGAAGATGTCGACG
ACACACCCGGACAACGACAGGCAGAGAATCAGAAGGACTGTAACGCGGAA
ACCGCATCAAACGGAGAGAACGCGTCTAGCTCTGGAGTTACTGACAACAA
GACCCGCACTGGCTTTCTACACATCGCTCGAGAAGGAGAAAGACTGGTCG
GGGACGTCTCGGACCAACACTTGATAAGGCAGTGGGAAGAGTGTGTATCA
AAGGCAGCGGCTTTGGTGAAGGAAATGGAAGGACGTTCTCCGTCACAACG
AGCCCCAAGTGACAATGTGCAACACAAATGA
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Coding sequence (CDS) from alignment at tig00000190_pilon:67028..68308-

>Ggra9288.t1 ID=Ggra9288.t1|Name=Ggra9288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000190_pilon:67028..68308- (Gracilaria gracilis GNS1m male)
ATGAAAGCAAAGGGTGCTGTTCTGGTGGATGTTGTATCATCTCGTTTGGA
AGTTGTGCGTCGCGTAAAGGAAGAACTTTTCCTCAGTACCAATCCCACTA
CGATAGACACCCTAAAACTATTGTCTCAGAGGACGAAGGAGGTCAGAAAC
CGAAATACGAACGAGACATTGGTAGAGGTCGAAGGTGGATTCCTGCAGAG
CAAATTGGTGCTGGACAATAAGGACGTCAGGGCAATTGTCAAGGGGAGCA
TGGCCACAGATCAAGCGTTGGTGTTCACACTCTCATTTCTGAATAACTGG
ACTCCAGAGGCAACCAGTGGCATACATGTAGCCGACCCAATGCACACTGC
GGGCTGGTGGGAGAAGCGTCTTACCTCGAAGTGTGAGGAGAAGAAGCTTC
GTCGTCAGGTTACGGGGTCAACTGGTTATCACAGGAGATGCCATGAAATG
ATGTGGTGCTCTGAGATCTCGCTACTCTTCCTAACAGGTAGTAATCATTG
GAGTCTTGCGGTAGTCTACAATCTATCTTCACTGCTGAACTACTTCAAAA
GTTATGGATGGCGATTGAAGCCTGGAACCGTGAAGAAGAAGGTTAAAGCA
TCAATTATATATCTTGACAGCCTGGGTCTGGACAGCCCGCACATTGACTT
ATCCGTTCTAATTCGAAAGTATTGCGGTGTTCATGTCCAGAGAGACCTCG
AGTGTGGCTTTTACGCTAGCTTCAACGCATCATTTGTCTCCAAGAACCTC
GCACTATTTCGCAACGGTGGTACAAAACATATCATCCGTGATCTTAAGAC
ATTCTACGCAACCTATTCGTTTTCCGAGTATCATCTTCTCCTGCAAAATC
GTTTACGTGCACTAACCGCAGCATATACTCGTAATCTCAAGATGGTCATT
CGATGTGCAGCGAACGTTGAAGATGTCGACGACACACCCGGACAACGACA
GGCAGAGAATCAGAAGGACTGTAACGCGGAAACCGCATCAAACGGAGAGA
ACGCGTCTAGCTCTGGAGTTACTGACAACAAGACCCGCACTGGCTTTCTA
CACATCGCTCGAGAAGGAGAAAGACTGGTCGGGGACGTCTCGGACCAACA
CTTGATAAGGCAGTGGGAAGAGTGTGTATCAAAGGCAGCGGCTTTGGTGA
AGGAAATGGAAGGACGTTCTCCGTCACAACGAGCCCCAAGTGACAATGTG
CAACACAAATGA
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