Ggra928.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra928.t1
Unique NameGgra928.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:646904..647785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra928Ggra928Gracilaria gracilis GNS1m malegenetig00000049_pilon 646904..647785 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra928.t1.start1Ggra928.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 646904..646906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra928.t1.CDS1Ggra928.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 646904..647785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra928.t1.exon1Ggra928.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 646904..647785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra928.t1.stop1Ggra928.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 647783..647785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra928.t1Ggra928.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 646904..647785 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra928.t1 ID=Ggra928.t1|Name=Ggra928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MLLVVLGMKDKEELLFSHYKTVPCLHALVRHSLYVSHIKNKRIQLSGLAL
SSRTCASHYQTLSPTSCAVASTTIPMKLCAIFLLFCWVAFHANAQAPDPE
GVGAGFLDPLPPPPATTTRPSLFVMPSRPNRKPRVFVTFARRTPTPTPFV
MSPEPVEVPMEPMIPTEMGPMDMAPMDMAPMDMVPMDMGPMDMGPMDMGP
MDMDPMNMAPMGMAPMNMAPMNMAPMNMAPMNMAPVPSPSVLDMTMPGID
MPGSEGMAPFISAPTPTEIELMPTDTDDPEIDVDPSPSPLFEF*
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spliced messenger RNA

>Ggra928.t1 ID=Ggra928.t1|Name=Ggra928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000049_pilon:646904..647785+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTAGTTGTGCTCGGCATGAAGGACAAGGAGGAACTCCTTTTCTC
TCACTATAAGACCGTACCCTGTCTGCATGCCCTAGTTCGACATTCGCTTT
ACGTCAGCCATATAAAAAACAAGCGTATCCAGCTTTCCGGGCTCGCTCTC
TCAAGCAGAACCTGCGCATCTCATTACCAGACTTTGTCGCCGACCTCCTG
TGCCGTCGCATCAACCACCATTCCGATGAAGCTGTGTGCCATCTTTCTTC
TCTTCTGCTGGGTCGCGTTCCATGCGAACGCCCAGGCCCCTGATCCAGAG
GGTGTGGGAGCGGGTTTTTTGGATCCTCTCCCACCGCCGCCCGCAACCAC
AACCAGGCCCTCCTTATTCGTGATGCCATCCCGTCCAAATAGGAAACCGA
GGGTTTTTGTCACCTTTGCGAGGCGAACTCCGACGCCTACTCCATTTGTC
ATGAGCCCAGAACCAGTGGAGGTGCCGATGGAACCTATGATCCCTACGGA
AATGGGTCCCATGGATATGGCTCCAATGGATATGGCTCCAATGGATATGG
TTCCAATGGATATGGGTCCCATGGATATGGGTCCAATGGATATGGGTCCC
ATGGATATGGATCCGATGAATATGGCTCCAATGGGTATGGCGCCCATGAA
TATGGCGCCCATGAATATGGCTCCCATGAATATGGCTCCCATGAATATGG
CTCCAGTACCATCCCCTTCTGTACTTGATATGACAATGCCTGGAATTGAT
ATGCCTGGCTCCGAAGGCATGGCCCCCTTCATTTCTGCACCAACGCCCAC
AGAAATTGAACTTATGCCTACGGATACTGATGATCCGGAGATCGACGTTG
ACCCTTCTCCTTCTCCTCTCTTTGAGTTCTAA
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protein sequence of Ggra928.t1

>Ggra928.t1 ID=Ggra928.t1|Name=Ggra928.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MLLVVLGMKDKEELLFSHYKTVPCLHALVRHSLYVSHIKNKRIQLSGLAL
SSRTCASHYQTLSPTSCAVASTTIPMKLCAIFLLFCWVAFHANAQAPDPE
GVGAGFLDPLPPPPATTTRPSLFVMPSRPNRKPRVFVTFARRTPTPTPFV
MSPEPVEVPMEPMIPTEMGPMDMAPMDMAPMDMVPMDMGPMDMGPMDMGP
MDMDPMNMAPMGMAPMNMAPMNMAPMNMAPMNMAPVPSPSVLDMTMPGID
MPGSEGMAPFISAPTPTEIELMPTDTDDPEIDVDPSPSPLFEF*
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mRNA from alignment at tig00000049_pilon:646904..647785+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra928.t1 ID=Ggra928.t1|Name=Ggra928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000049_pilon:646904..647785+ (Gracilaria gracilis GNS1m male)
ATGTTGCTAGTTGTGCTCGGCATGAAGGACAAGGAGGAACTCCTTTTCTC
TCACTATAAGACCGTACCCTGTCTGCATGCCCTAGTTCGACATTCGCTTT
ACGTCAGCCATATAAAAAACAAGCGTATCCAGCTTTCCGGGCTCGCTCTC
TCAAGCAGAACCTGCGCATCTCATTACCAGACTTTGTCGCCGACCTCCTG
TGCCGTCGCATCAACCACCATTCCGATGAAGCTGTGTGCCATCTTTCTTC
TCTTCTGCTGGGTCGCGTTCCATGCGAACGCCCAGGCCCCTGATCCAGAG
GGTGTGGGAGCGGGTTTTTTGGATCCTCTCCCACCGCCGCCCGCAACCAC
AACCAGGCCCTCCTTATTCGTGATGCCATCCCGTCCAAATAGGAAACCGA
GGGTTTTTGTCACCTTTGCGAGGCGAACTCCGACGCCTACTCCATTTGTC
ATGAGCCCAGAACCAGTGGAGGTGCCGATGGAACCTATGATCCCTACGGA
AATGGGTCCCATGGATATGGCTCCAATGGATATGGCTCCAATGGATATGG
TTCCAATGGATATGGGTCCCATGGATATGGGTCCAATGGATATGGGTCCC
ATGGATATGGATCCGATGAATATGGCTCCAATGGGTATGGCGCCCATGAA
TATGGCGCCCATGAATATGGCTCCCATGAATATGGCTCCCATGAATATGG
CTCCAGTACCATCCCCTTCTGTACTTGATATGACAATGCCTGGAATTGAT
ATGCCTGGCTCCGAAGGCATGGCCCCCTTCATTTCTGCACCAACGCCCAC
AGAAATTGAACTTATGCCTACGGATACTGATGATCCGGAGATCGACGTTG
ACCCTTCTCCTTCTCCTCTCTTTGAGTTCTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:646904..647785+

>Ggra928.t1 ID=Ggra928.t1|Name=Ggra928.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000049_pilon:646904..647785+ (Gracilaria gracilis GNS1m male)
ATGTTGCTAGTTGTGCTCGGCATGAAGGACAAGGAGGAACTCCTTTTCTC
TCACTATAAGACCGTACCCTGTCTGCATGCCCTAGTTCGACATTCGCTTT
ACGTCAGCCATATAAAAAACAAGCGTATCCAGCTTTCCGGGCTCGCTCTC
TCAAGCAGAACCTGCGCATCTCATTACCAGACTTTGTCGCCGACCTCCTG
TGCCGTCGCATCAACCACCATTCCGATGAAGCTGTGTGCCATCTTTCTTC
TCTTCTGCTGGGTCGCGTTCCATGCGAACGCCCAGGCCCCTGATCCAGAG
GGTGTGGGAGCGGGTTTTTTGGATCCTCTCCCACCGCCGCCCGCAACCAC
AACCAGGCCCTCCTTATTCGTGATGCCATCCCGTCCAAATAGGAAACCGA
GGGTTTTTGTCACCTTTGCGAGGCGAACTCCGACGCCTACTCCATTTGTC
ATGAGCCCAGAACCAGTGGAGGTGCCGATGGAACCTATGATCCCTACGGA
AATGGGTCCCATGGATATGGCTCCAATGGATATGGCTCCAATGGATATGG
TTCCAATGGATATGGGTCCCATGGATATGGGTCCAATGGATATGGGTCCC
ATGGATATGGATCCGATGAATATGGCTCCAATGGGTATGGCGCCCATGAA
TATGGCGCCCATGAATATGGCTCCCATGAATATGGCTCCCATGAATATGG
CTCCAGTACCATCCCCTTCTGTACTTGATATGACAATGCCTGGAATTGAT
ATGCCTGGCTCCGAAGGCATGGCCCCCTTCATTTCTGCACCAACGCCCAC
AGAAATTGAACTTATGCCTACGGATACTGATGATCCGGAGATCGACGTTG
ACCCTTCTCCTTCTCCTCTCTTTGAGTTCTAA
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