Ggra9275.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9275.t1
Unique Name	Ggra9275.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	332

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:701874..702869 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9275	Ggra9275	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 701874..702869 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9275.t1.start1	Ggra9275.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 701874..701876 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9275.t1.CDS1	Ggra9275.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 701874..702869 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9275.t1.exon1	Ggra9275.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 701874..702869 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9275.t1.stop1	Ggra9275.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 702867..702869 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9275.t1	Ggra9275.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 701874..702869 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:701874..702869+
coding sequence from alignment at tig00000075_pilon:701874..702869+

mRNA sequence

>Ggra9275.t1 ID=Ggra9275.t1|Name=Ggra9275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MLQDQLINRYVRWHRQNRHTAPRLVLRFNETHPGVGDRFLSLVTAFVMAS
FSDRVLLLDWIQPNSIFQFFLPTQLRDLKFKEEDRLEEQNSKSIYFCDRL
CARPYTLNQLLRPEHFVIFPQGTTSSAHFLCGHFTRTHPQLALSRTFENI
SDSLNNVSPHMFAAVFDAMLKPSPKLLKLVGERSTLFQKPYIGIHARLGK
GLGEGGTRFPTKLDPTHIASCLVGPALKVGQDHGVQQYYLATDTVPFRDV
FETVLKKRNAKAKMIRFDDIVPVHTKGCQMNITECYNTMIELIILSNSIH
IVAIQSSFSKVAGYIGNVTVDSRGHATQCVE*

spliced messenger RNA

>Ggra9275.t1 ID=Ggra9275.t1|Name=Ggra9275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:701874..702869+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAAGACCAACTAATAAATCGCTATGTCAGATGGCATCGCCAGAA
TCGACACACAGCGCCAAGACTCGTTCTCCGCTTCAATGAGACACATCCAG
GGGTGGGCGATCGCTTTCTTTCGCTCGTCACCGCGTTTGTTATGGCTTCA
TTTTCTGATCGGGTACTACTCCTGGACTGGATACAGCCCAATTCCATTTT
TCAGTTCTTCTTACCCACTCAGCTTCGTGATTTGAAGTTCAAGGAAGAAG
ACCGTCTGGAGGAGCAAAACTCCAAGTCTATTTACTTTTGCGACCGCCTC
TGTGCGAGACCGTATACTCTTAACCAGCTGTTGCGTCCTGAACATTTTGT
TATCTTCCCACAAGGCACCACCTCCAGTGCGCATTTTCTTTGTGGACACT
TTACCAGAACACATCCGCAGCTAGCTCTTTCACGGACGTTCGAAAACATA
TCGGACTCCCTCAACAATGTATCACCGCATATGTTCGCTGCCGTGTTTGA
TGCTATGCTCAAGCCGTCGCCCAAACTGCTTAAACTAGTTGGGGAAAGGA
GCACTTTGTTTCAGAAGCCTTACATCGGAATTCATGCGCGGTTAGGAAAA
GGGCTGGGTGAAGGTGGCACCAGATTCCCCACAAAACTGGACCCTACTCA
TATTGCCTCCTGTTTGGTTGGGCCGGCCTTGAAGGTTGGCCAGGATCACG
GCGTACAGCAGTACTACCTTGCCACTGATACGGTCCCTTTTCGTGACGTT
TTCGAGACGGTGCTGAAGAAACGAAACGCGAAGGCGAAGATGATTCGCTT
TGACGACATCGTACCGGTTCACACAAAAGGATGTCAAATGAATATAACGG
AGTGTTATAATACCATGATCGAGCTTATTATATTGTCGAATAGCATACAT
ATTGTTGCCATACAAAGCAGTTTCTCGAAAGTGGCCGGGTATATAGGAAA
TGTTACGGTCGATTCCCGCGGGCATGCGACCCAATGCGTGGAATAG

protein sequence of Ggra9275.t1

>Ggra9275.t1 ID=Ggra9275.t1|Name=Ggra9275.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MLQDQLINRYVRWHRQNRHTAPRLVLRFNETHPGVGDRFLSLVTAFVMAS
FSDRVLLLDWIQPNSIFQFFLPTQLRDLKFKEEDRLEEQNSKSIYFCDRL
CARPYTLNQLLRPEHFVIFPQGTTSSAHFLCGHFTRTHPQLALSRTFENI
SDSLNNVSPHMFAAVFDAMLKPSPKLLKLVGERSTLFQKPYIGIHARLGK
GLGEGGTRFPTKLDPTHIASCLVGPALKVGQDHGVQQYYLATDTVPFRDV
FETVLKKRNAKAKMIRFDDIVPVHTKGCQMNITECYNTMIELIILSNSIH
IVAIQSSFSKVAGYIGNVTVDSRGHATQCVE*

mRNA from alignment at tig00000075_pilon:701874..702869+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9275.t1 ID=Ggra9275.t1|Name=Ggra9275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:701874..702869+ (Gracilaria gracilis GNS1m male)
ATGCTCCAAGACCAACTAATAAATCGCTATGTCAGATGGCATCGCCAGAA
TCGACACACAGCGCCAAGACTCGTTCTCCGCTTCAATGAGACACATCCAG
GGGTGGGCGATCGCTTTCTTTCGCTCGTCACCGCGTTTGTTATGGCTTCA
TTTTCTGATCGGGTACTACTCCTGGACTGGATACAGCCCAATTCCATTTT
TCAGTTCTTCTTACCCACTCAGCTTCGTGATTTGAAGTTCAAGGAAGAAG
ACCGTCTGGAGGAGCAAAACTCCAAGTCTATTTACTTTTGCGACCGCCTC
TGTGCGAGACCGTATACTCTTAACCAGCTGTTGCGTCCTGAACATTTTGT
TATCTTCCCACAAGGCACCACCTCCAGTGCGCATTTTCTTTGTGGACACT
TTACCAGAACACATCCGCAGCTAGCTCTTTCACGGACGTTCGAAAACATA
TCGGACTCCCTCAACAATGTATCACCGCATATGTTCGCTGCCGTGTTTGA
TGCTATGCTCAAGCCGTCGCCCAAACTGCTTAAACTAGTTGGGGAAAGGA
GCACTTTGTTTCAGAAGCCTTACATCGGAATTCATGCGCGGTTAGGAAAA
GGGCTGGGTGAAGGTGGCACCAGATTCCCCACAAAACTGGACCCTACTCA
TATTGCCTCCTGTTTGGTTGGGCCGGCCTTGAAGGTTGGCCAGGATCACG
GCGTACAGCAGTACTACCTTGCCACTGATACGGTCCCTTTTCGTGACGTT
TTCGAGACGGTGCTGAAGAAACGAAACGCGAAGGCGAAGATGATTCGCTT
TGACGACATCGTACCGGTTCACACAAAAGGATGTCAAATGAATATAACGG
AGTGTTATAATACCATGATCGAGCTTATTATATTGTCGAATAGCATACAT
ATTGTTGCCATACAAAGCAGTTTCTCGAAAGTGGCCGGGTATATAGGAAA
TGTTACGGTCGATTCCCGCGGGCATGCGACCCAATGCGTGGAATAG

Coding sequence (CDS) from alignment at tig00000075_pilon:701874..702869+

>Ggra9275.t1 ID=Ggra9275.t1|Name=Ggra9275.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000075_pilon:701874..702869+ (Gracilaria gracilis GNS1m male)
ATGCTCCAAGACCAACTAATAAATCGCTATGTCAGATGGCATCGCCAGAA
TCGACACACAGCGCCAAGACTCGTTCTCCGCTTCAATGAGACACATCCAG
GGGTGGGCGATCGCTTTCTTTCGCTCGTCACCGCGTTTGTTATGGCTTCA
TTTTCTGATCGGGTACTACTCCTGGACTGGATACAGCCCAATTCCATTTT
TCAGTTCTTCTTACCCACTCAGCTTCGTGATTTGAAGTTCAAGGAAGAAG
ACCGTCTGGAGGAGCAAAACTCCAAGTCTATTTACTTTTGCGACCGCCTC
TGTGCGAGACCGTATACTCTTAACCAGCTGTTGCGTCCTGAACATTTTGT
TATCTTCCCACAAGGCACCACCTCCAGTGCGCATTTTCTTTGTGGACACT
TTACCAGAACACATCCGCAGCTAGCTCTTTCACGGACGTTCGAAAACATA
TCGGACTCCCTCAACAATGTATCACCGCATATGTTCGCTGCCGTGTTTGA
TGCTATGCTCAAGCCGTCGCCCAAACTGCTTAAACTAGTTGGGGAAAGGA
GCACTTTGTTTCAGAAGCCTTACATCGGAATTCATGCGCGGTTAGGAAAA
GGGCTGGGTGAAGGTGGCACCAGATTCCCCACAAAACTGGACCCTACTCA
TATTGCCTCCTGTTTGGTTGGGCCGGCCTTGAAGGTTGGCCAGGATCACG
GCGTACAGCAGTACTACCTTGCCACTGATACGGTCCCTTTTCGTGACGTT
TTCGAGACGGTGCTGAAGAAACGAAACGCGAAGGCGAAGATGATTCGCTT
TGACGACATCGTACCGGTTCACACAAAAGGATGTCAAATGAATATAACGG
AGTGTTATAATACCATGATCGAGCTTATTATATTGTCGAATAGCATACAT
ATTGTTGCCATACAAAGCAGTTTCTCGAAAGTGGCCGGGTATATAGGAAA
TGTTACGGTCGATTCCCGCGGGCATGCGACCCAATGCGTGGAATAG