Ggra9271.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9271.t1
Unique NameGgra9271.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:667685..668164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9271Ggra9271Gracilaria gracilis GNS1m malegenetig00000075_pilon 667685..668164 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9271.t1.start1Ggra9271.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 667685..667687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9271.t1.CDS1Ggra9271.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 667685..668164 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9271.t1.exon1Ggra9271.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 667685..668164 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9271.t1.stop1Ggra9271.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 668162..668164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9271.t1Ggra9271.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 667685..668164 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9271.t1 ID=Ggra9271.t1|Name=Ggra9271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MRVSAFSMATATLLLLLLPPLLMHRAHAAVALRSELSDADDADIDHYSSP
SQQQQPLSKYCTPDAFRAAASCICYLRFIKVAMPFNKSDRRVVLCRPFGP
LASQSTNCRYLKQSNFNVFPTLLWLDSFARYCFGSGILDELNPQSKWRPF
FEAVQRNSS*
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spliced messenger RNA

>Ggra9271.t1 ID=Ggra9271.t1|Name=Ggra9271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000075_pilon:667685..668164+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTGAGCGCCTTCTCAatggccacggccacgctgctgctgctgct
gctgccgccgctgctgatgcATCGCGCTCACGCGGCGGTTGCCCTGCGCA
GCGAGCTGAGCGACGCCGATGACGCTGACATTGATCACTATTCGTCGCCT
TCGCAGCAACAGCAGCCTCTGAGCAAGTATTGTACGCCCGACGCTTTTCG
CGCCGCCGCTTCTTGTATCTGCTACCTCCGCTTCATCAAGGTGGCCATGC
CGTTCAACAAGTCCGATCGACGCGTCGTGCTGTGTCGCCCGTTCGGACCG
CTTGCCTCGCAGTCCACCAACTGCCGCTACCTCAAACAGAGCAACTTCAA
CGTGTTCCCCACTCTGCTGTGGCTGGACTCGTTCGCCAGGTACTGCTTCG
GCTCGGGCATTTTGGACGAACTCAACCCCCAATCCAAGTGGAGGCCCTTC
TTTGAGGCTGTTCAGCGCAACTCGTCGTAG
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protein sequence of Ggra9271.t1

>Ggra9271.t1 ID=Ggra9271.t1|Name=Ggra9271.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MRVSAFSMATATLLLLLLPPLLMHRAHAAVALRSELSDADDADIDHYSSP
SQQQQPLSKYCTPDAFRAAASCICYLRFIKVAMPFNKSDRRVVLCRPFGP
LASQSTNCRYLKQSNFNVFPTLLWLDSFARYCFGSGILDELNPQSKWRPF
FEAVQRNSS*
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mRNA from alignment at tig00000075_pilon:667685..668164+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9271.t1 ID=Ggra9271.t1|Name=Ggra9271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000075_pilon:667685..668164+ (Gracilaria gracilis GNS1m male)
ATGCGTGTGAGCGCCTTCTCAatggccacggccacgctgctgctgctgct
gctgccgccgctgctgatgcATCGCGCTCACGCGGCGGTTGCCCTGCGCA
GCGAGCTGAGCGACGCCGATGACGCTGACATTGATCACTATTCGTCGCCT
TCGCAGCAACAGCAGCCTCTGAGCAAGTATTGTACGCCCGACGCTTTTCG
CGCCGCCGCTTCTTGTATCTGCTACCTCCGCTTCATCAAGGTGGCCATGC
CGTTCAACAAGTCCGATCGACGCGTCGTGCTGTGTCGCCCGTTCGGACCG
CTTGCCTCGCAGTCCACCAACTGCCGCTACCTCAAACAGAGCAACTTCAA
CGTGTTCCCCACTCTGCTGTGGCTGGACTCGTTCGCCAGGTACTGCTTCG
GCTCGGGCATTTTGGACGAACTCAACCCCCAATCCAAGTGGAGGCCCTTC
TTTGAGGCTGTTCAGCGCAACTCGTCGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:667685..668164+

>Ggra9271.t1 ID=Ggra9271.t1|Name=Ggra9271.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000075_pilon:667685..668164+ (Gracilaria gracilis GNS1m male)
ATGCGTGTGAGCGCCTTCTCAatggccacggccacgctgctgctgctgct
gctgccgccgctgctgatgcATCGCGCTCACGCGGCGGTTGCCCTGCGCA
GCGAGCTGAGCGACGCCGATGACGCTGACATTGATCACTATTCGTCGCCT
TCGCAGCAACAGCAGCCTCTGAGCAAGTATTGTACGCCCGACGCTTTTCG
CGCCGCCGCTTCTTGTATCTGCTACCTCCGCTTCATCAAGGTGGCCATGC
CGTTCAACAAGTCCGATCGACGCGTCGTGCTGTGTCGCCCGTTCGGACCG
CTTGCCTCGCAGTCCACCAACTGCCGCTACCTCAAACAGAGCAACTTCAA
CGTGTTCCCCACTCTGCTGTGGCTGGACTCGTTCGCCAGGTACTGCTTCG
GCTCGGGCATTTTGGACGAACTCAACCCCCAATCCAAGTGGAGGCCCTTC
TTTGAGGCTGTTCAGCGCAACTCGTCGTAG
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