Ggra9270.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9270.t1
Unique Name	Ggra9270.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	702

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:665102..667358 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004992785.1
PFAMs	DUF563
Max annot lvl	33154\|Opisthokonta
Evalue	0.000284
EggNOG OGs	2D613@1\|root,2T0C2@2759\|Eukaryota,3AS43@33154\|Opisthokonta
Description	Protein of unknown function (DUF563)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9270	Ggra9270	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 665102..667358 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1	Ggra9270.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 665102..667358 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1.start1	Ggra9270.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 665102..665104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1.CDS1	Ggra9270.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 665102..665313 +
Ggra9270.t1.CDS2	Ggra9270.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 665465..667358 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1.exon1	Ggra9270.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 665102..665313 +
Ggra9270.t1.exon2	Ggra9270.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 665465..667358 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1.intron1	Ggra9270.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000075_pilon 665314..665464 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9270.t1.stop1	Ggra9270.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 667356..667358 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:665102..667358+
coding sequence from alignment at tig00000075_pilon:665102..667358+

mRNA sequence

>Ggra9270.t1 ID=Ggra9270.t1|Name=Ggra9270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp
MDPKDCLPLLYWCFTWHFIQASVPLSFLNYGNTAVRQKLHGVFEMIFELN
WGFITKVDIVYLCTTIPLVAFPLQQPAVLRHTAVATMTPPALELKLPTVR
SRLVSLSLVALLVVAFTASLLYVATSISALQLRLHSHICQQDDPDDPLCQ
SRVAPPPVAAFSALADDDDDERLLHHHDPMRHLEAHFRETERALRHPLLW
LRHLRDHHPDARVETRRTACREFDAGAQTCVFEGFACVNVSAQLPFGRPL
VYFVHDAQPDHAVVPNDRWCSLRHQSSDPRYFSSRHWPILNNTVAPQRSC
LDARYRTSQSLLSSRFDEHNASDGQLPDTQRMRIKWLPSIWLSDLDYFNN
NHNNHLVKDILWMLDLSLWQQSLSVTSSPAHNLPLNLTSSLFESQGTHLY
MPQGMEDFERQTSRDVNRLNYALILQQNISKLYANRSDHDMKQNSSEKRT
TQTLFQAYPELLQDDKLLFHRDELNASSHDLVCTARLTVGAKIGNGAHER
VCRSLRQRAHEFYGIEPNAMKRLGHIYFPQPPKRIVILQRHVTRRIGNVQ
QLHAAIKKEFEPSGVQVELWSTEQVQTAEQYVRVFSRAGVVLTPHGSQSM
GQIYMARHSALIEVMPVGYTDYAFNLLSESCKIWYYELQSVRPPSKTEQW
YEERCGKLQPHMLNPCTAVKSVDVWVDVAAALRTLKLALERLGYAVGPWM
R*

spliced messenger RNA

>Ggra9270.t1 ID=Ggra9270.t1|Name=Ggra9270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2106bp|location=Sequence derived from alignment at tig00000075_pilon:665102..667358+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCGAAGGACTGCTTGCCGCTGTTGTACTGGTGTTTTACTTGGCA
TTTTATTCAAGCATCCGTTCCGCTGTCGTTTCTAAATTACGGAAATACAG
CTGTTCGCCAAAAATTACATGGCGTGTTTGAAATGATTTTTGAACTGAAC
TGGGGTTTTATCACGAAGGTAGATATCGTGTACCTTTGTACAACGATACC
GTTGGTAGCGTTCCCGCTGCAGCAGCCGGCGGTGCTTCGTCACACCGCCG
TCGCCACAATGACGCCGCCCGCCCTGGAGCTCAAGCTGCCCACGGTTCGC
TCCCGTCTGGTGTCGCTCTCTCTGGTGGCGCTGCTGGTGGTCGCCTTCAC
CGCGTCCTTGCTCTACGTCGCCACCTCCATCAGCGCGCTACAGCTGCGTC
TACACTCGCACATCTGCCAGCAAGATGACCCCGACGACCCGCTCTGCCAG
TCGCGCGTCGCGCCGCCGCCTGTGGCGGCCTTCTCCGCGCTGGCGGATGA
CGACGATGACGAGCGCCTGTTGCACCACCATGATCCCATGCGCCATCTCG
AAGCGCACTTTCGCGAGACGGAGCGGGCATTACGTCACCCGCTGTTATGG
CTGCGCCACCTGAGGGACCATCACCCCGACGCGCGCGTGGAGACGCGTCG
TACCGCCTGTCGCGAGTTTGACGCCGGCGCGCAGACGTGCGTGTTTGAGG
GGTTTGCATGCGTCAATGTGTCCGCTCAGCTGCCGTTTGGACGCCCGTTG
GTATACTTTGTGCATGATGCACAGCCCGACCATGCCGTGGTGCCCAACGA
TCGATGGTGCTCGCTCCGGCATCAGTCTTCGGATCCTCGGTACTTTTCGT
CCAGACACTGGCCCATTCTCAACAATACTGTCGCGCCGCAGCGCTCCTGC
TTGGATGCCAGGTATCGCACGTCGCAGTCGTTGCTATCGTCGCGCTTTGA
TGAGCACAATGCATCAGACGGGCAGCTTCCGGACACGCAGCGCATGCGCA
TCAAATGGCTGCCATCCATATGGCTGTCAGATCTTGACTACTTCAATAAC
AACCATAACAACCACCTGGTCAAGGACATTTTGTGGATGCTTGACCTGTC
GTTGTGGCAACAATCGCTCAGTGTTACTTCTTCTCCCGCACATAATTTGC
CACTAAACCTGACGTCGTCTCTTTTCGAATCGCAAGGCACGCATCTGTAC
ATGCCGCAAGGCATGGAGGACTTTGAGCGTCAAACTTCGCGCGACGTGAA
CCGGCTCAACTACGCGCTCATTCTTCAACAAAACATCTCCAAACTTTACG
CCAACCGCAGCGACCACGACATGAAACAAAACAGCAGCGAGAAACGTACC
ACACAAACGCTGTTCCAGGCGTACCCCGAGCTGTTGCAAGACGACAAACT
GCTGTTTCACCGCGACGAACTGAACGCGAGCTCACACGACCTGGTGTGCA
CGGCGCGGCTGACGGTGGGCGCCAAGATTGGCAACGGCGCGCACGAGAGG
GTGTGCCGCTCGCTGCGACAGCGCGCGCACGAGTTCTACGGCATCGAGCC
GAACGCGATGAAGCGGCTGGGGCATATTTACTTTCCGCAACCGCCCAAGC
GCATCGTGATCCTGCAACGGCACGTGACGCGACGCATCGGCAACGTGCAG
CAGCTGCACGCGGCCATCAAGAAAGAGTTTGAGCCGAGCGGAGTGCAGGT
GGAGCTGTGGAGCACCGAGCAGGTGCAGACGGCGGAGCAGTACGTGCGGG
TGTTCTCGCGCGCGGGGGTGGTGTTGACGCCGCACGGGTCGCAGTCGATG
GGGCAGATATACATGGCGCGCCACAGCGCGTTGATCGAGGTGATGCCGGT
GGGGTACACGGACTACGCATTCAACCTGCTGTCGGAGTCGTGCAAGATCT
GGTACTACGAGCTGCAGAGCGTGCGGCCGCCGAGCAAGACGGAGCAGTGG
TACGAGGAGCGGTGCGGCAAGCTGCAGCCGCACATGTTAAACCCGTGCAC
GGCCGTCAAGTCGGTGGACGTGTGGGTGGACGTGGCGGCGGCATTGCGCA
CGCTCAAGCTGGCGCTGGAGCGGCTCGGCTACGCCGTGGGGCCGTGGATG
CGATAG

protein sequence of Ggra9270.t1

>Ggra9270.t1 ID=Ggra9270.t1|Name=Ggra9270.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=702bp
MDPKDCLPLLYWCFTWHFIQASVPLSFLNYGNTAVRQKLHGVFEMIFELN
WGFITKVDIVYLCTTIPLVAFPLQQPAVLRHTAVATMTPPALELKLPTVR
SRLVSLSLVALLVVAFTASLLYVATSISALQLRLHSHICQQDDPDDPLCQ
SRVAPPPVAAFSALADDDDDERLLHHHDPMRHLEAHFRETERALRHPLLW
LRHLRDHHPDARVETRRTACREFDAGAQTCVFEGFACVNVSAQLPFGRPL
VYFVHDAQPDHAVVPNDRWCSLRHQSSDPRYFSSRHWPILNNTVAPQRSC
LDARYRTSQSLLSSRFDEHNASDGQLPDTQRMRIKWLPSIWLSDLDYFNN
NHNNHLVKDILWMLDLSLWQQSLSVTSSPAHNLPLNLTSSLFESQGTHLY
MPQGMEDFERQTSRDVNRLNYALILQQNISKLYANRSDHDMKQNSSEKRT
TQTLFQAYPELLQDDKLLFHRDELNASSHDLVCTARLTVGAKIGNGAHER
VCRSLRQRAHEFYGIEPNAMKRLGHIYFPQPPKRIVILQRHVTRRIGNVQ
QLHAAIKKEFEPSGVQVELWSTEQVQTAEQYVRVFSRAGVVLTPHGSQSM
GQIYMARHSALIEVMPVGYTDYAFNLLSESCKIWYYELQSVRPPSKTEQW
YEERCGKLQPHMLNPCTAVKSVDVWVDVAAALRTLKLALERLGYAVGPWM
R*

mRNA from alignment at tig00000075_pilon:665102..667358+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9270.t1 ID=Ggra9270.t1|Name=Ggra9270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2257bp|location=Sequence derived from alignment at tig00000075_pilon:665102..667358+ (Gracilaria gracilis GNS1m male)
ATGGACCCGAAGGACTGCTTGCCGCTGTTGTACTGGTGTTTTACTTGGCA
TTTTATTCAAGCATCCGTTCCGCTGTCGTTTCTAAATTACGGAAATACAG
CTGTTCGCCAAAAATTACATGGCGTGTTTGAAATGATTTTTGAACTGAAC
TGGGGTTTTATCACGAAGGTAGATATCGTGTACCTTTGTACAACGATACC
GTTGGTAGCGTTGTAAGTTACCTGTAGAACATCCTTCCGACTTGCTGCTG
TGGCGCGGCACGTCGATGCACACTGTCGGAGCAACAGACTCAGCAAAAAA
AAAGCGCCTCTCTGTGCCGCAGCCACAGGCCTGCCGCAGTCTTCATCGCC
CGCGAGCGCACAGCCCGCTGCAGCAGCCGGCGGTGCTTCGTCACACCGCC
GTCGCCACAATGACGCCGCCCGCCCTGGAGCTCAAGCTGCCCACGGTTCG
CTCCCGTCTGGTGTCGCTCTCTCTGGTGGCGCTGCTGGTGGTCGCCTTCA
CCGCGTCCTTGCTCTACGTCGCCACCTCCATCAGCGCGCTACAGCTGCGT
CTACACTCGCACATCTGCCAGCAAGATGACCCCGACGACCCGCTCTGCCA
GTCGCGCGTCGCGCCGCCGCCTGTGGCGGCCTTCTCCGCGCTGGCGGATG
ACGACGATGACGAGCGCCTGTTGCACCACCATGATCCCATGCGCCATCTC
GAAGCGCACTTTCGCGAGACGGAGCGGGCATTACGTCACCCGCTGTTATG
GCTGCGCCACCTGAGGGACCATCACCCCGACGCGCGCGTGGAGACGCGTC
GTACCGCCTGTCGCGAGTTTGACGCCGGCGCGCAGACGTGCGTGTTTGAG
GGGTTTGCATGCGTCAATGTGTCCGCTCAGCTGCCGTTTGGACGCCCGTT
GGTATACTTTGTGCATGATGCACAGCCCGACCATGCCGTGGTGCCCAACG
ATCGATGGTGCTCGCTCCGGCATCAGTCTTCGGATCCTCGGTACTTTTCG
TCCAGACACTGGCCCATTCTCAACAATACTGTCGCGCCGCAGCGCTCCTG
CTTGGATGCCAGGTATCGCACGTCGCAGTCGTTGCTATCGTCGCGCTTTG
ATGAGCACAATGCATCAGACGGGCAGCTTCCGGACACGCAGCGCATGCGC
ATCAAATGGCTGCCATCCATATGGCTGTCAGATCTTGACTACTTCAATAA
CAACCATAACAACCACCTGGTCAAGGACATTTTGTGGATGCTTGACCTGT
CGTTGTGGCAACAATCGCTCAGTGTTACTTCTTCTCCCGCACATAATTTG
CCACTAAACCTGACGTCGTCTCTTTTCGAATCGCAAGGCACGCATCTGTA
CATGCCGCAAGGCATGGAGGACTTTGAGCGTCAAACTTCGCGCGACGTGA
ACCGGCTCAACTACGCGCTCATTCTTCAACAAAACATCTCCAAACTTTAC
GCCAACCGCAGCGACCACGACATGAAACAAAACAGCAGCGAGAAACGTAC
CACACAAACGCTGTTCCAGGCGTACCCCGAGCTGTTGCAAGACGACAAAC
TGCTGTTTCACCGCGACGAACTGAACGCGAGCTCACACGACCTGGTGTGC
ACGGCGCGGCTGACGGTGGGCGCCAAGATTGGCAACGGCGCGCACGAGAG
GGTGTGCCGCTCGCTGCGACAGCGCGCGCACGAGTTCTACGGCATCGAGC
CGAACGCGATGAAGCGGCTGGGGCATATTTACTTTCCGCAACCGCCCAAG
CGCATCGTGATCCTGCAACGGCACGTGACGCGACGCATCGGCAACGTGCA
GCAGCTGCACGCGGCCATCAAGAAAGAGTTTGAGCCGAGCGGAGTGCAGG
TGGAGCTGTGGAGCACCGAGCAGGTGCAGACGGCGGAGCAGTACGTGCGG
GTGTTCTCGCGCGCGGGGGTGGTGTTGACGCCGCACGGGTCGCAGTCGAT
GGGGCAGATATACATGGCGCGCCACAGCGCGTTGATCGAGGTGATGCCGG
TGGGGTACACGGACTACGCATTCAACCTGCTGTCGGAGTCGTGCAAGATC
TGGTACTACGAGCTGCAGAGCGTGCGGCCGCCGAGCAAGACGGAGCAGTG
GTACGAGGAGCGGTGCGGCAAGCTGCAGCCGCACATGTTAAACCCGTGCA
CGGCCGTCAAGTCGGTGGACGTGTGGGTGGACGTGGCGGCGGCATTGCGC
ACGCTCAAGCTGGCGCTGGAGCGGCTCGGCTACGCCGTGGGGCCGTGGAT
GCGATAG

Coding sequence (CDS) from alignment at tig00000075_pilon:665102..667358+

>Ggra9270.t1 ID=Ggra9270.t1|Name=Ggra9270.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2106bp|location=Sequence derived from alignment at tig00000075_pilon:665102..667358+ (Gracilaria gracilis GNS1m male)
ATGGACCCGAAGGACTGCTTGCCGCTGTTGTACTGGTGTTTTACTTGGCA
TTTTATTCAAGCATCCGTTCCGCTGTCGTTTCTAAATTACGGAAATACAG
CTGTTCGCCAAAAATTACATGGCGTGTTTGAAATGATTTTTGAACTGAAC
TGGGGTTTTATCACGAAGGTAGATATCGTGTACCTTTGTACAACGATACC
GTTGGTAGCGTTCCCGCTGCAGCAGCCGGCGGTGCTTCGTCACACCGCCG
TCGCCACAATGACGCCGCCCGCCCTGGAGCTCAAGCTGCCCACGGTTCGC
TCCCGTCTGGTGTCGCTCTCTCTGGTGGCGCTGCTGGTGGTCGCCTTCAC
CGCGTCCTTGCTCTACGTCGCCACCTCCATCAGCGCGCTACAGCTGCGTC
TACACTCGCACATCTGCCAGCAAGATGACCCCGACGACCCGCTCTGCCAG
TCGCGCGTCGCGCCGCCGCCTGTGGCGGCCTTCTCCGCGCTGGCGGATGA
CGACGATGACGAGCGCCTGTTGCACCACCATGATCCCATGCGCCATCTCG
AAGCGCACTTTCGCGAGACGGAGCGGGCATTACGTCACCCGCTGTTATGG
CTGCGCCACCTGAGGGACCATCACCCCGACGCGCGCGTGGAGACGCGTCG
TACCGCCTGTCGCGAGTTTGACGCCGGCGCGCAGACGTGCGTGTTTGAGG
GGTTTGCATGCGTCAATGTGTCCGCTCAGCTGCCGTTTGGACGCCCGTTG
GTATACTTTGTGCATGATGCACAGCCCGACCATGCCGTGGTGCCCAACGA
TCGATGGTGCTCGCTCCGGCATCAGTCTTCGGATCCTCGGTACTTTTCGT
CCAGACACTGGCCCATTCTCAACAATACTGTCGCGCCGCAGCGCTCCTGC
TTGGATGCCAGGTATCGCACGTCGCAGTCGTTGCTATCGTCGCGCTTTGA
TGAGCACAATGCATCAGACGGGCAGCTTCCGGACACGCAGCGCATGCGCA
TCAAATGGCTGCCATCCATATGGCTGTCAGATCTTGACTACTTCAATAAC
AACCATAACAACCACCTGGTCAAGGACATTTTGTGGATGCTTGACCTGTC
GTTGTGGCAACAATCGCTCAGTGTTACTTCTTCTCCCGCACATAATTTGC
CACTAAACCTGACGTCGTCTCTTTTCGAATCGCAAGGCACGCATCTGTAC
ATGCCGCAAGGCATGGAGGACTTTGAGCGTCAAACTTCGCGCGACGTGAA
CCGGCTCAACTACGCGCTCATTCTTCAACAAAACATCTCCAAACTTTACG
CCAACCGCAGCGACCACGACATGAAACAAAACAGCAGCGAGAAACGTACC
ACACAAACGCTGTTCCAGGCGTACCCCGAGCTGTTGCAAGACGACAAACT
GCTGTTTCACCGCGACGAACTGAACGCGAGCTCACACGACCTGGTGTGCA
CGGCGCGGCTGACGGTGGGCGCCAAGATTGGCAACGGCGCGCACGAGAGG
GTGTGCCGCTCGCTGCGACAGCGCGCGCACGAGTTCTACGGCATCGAGCC
GAACGCGATGAAGCGGCTGGGGCATATTTACTTTCCGCAACCGCCCAAGC
GCATCGTGATCCTGCAACGGCACGTGACGCGACGCATCGGCAACGTGCAG
CAGCTGCACGCGGCCATCAAGAAAGAGTTTGAGCCGAGCGGAGTGCAGGT
GGAGCTGTGGAGCACCGAGCAGGTGCAGACGGCGGAGCAGTACGTGCGGG
TGTTCTCGCGCGCGGGGGTGGTGTTGACGCCGCACGGGTCGCAGTCGATG
GGGCAGATATACATGGCGCGCCACAGCGCGTTGATCGAGGTGATGCCGGT
GGGGTACACGGACTACGCATTCAACCTGCTGTCGGAGTCGTGCAAGATCT
GGTACTACGAGCTGCAGAGCGTGCGGCCGCCGAGCAAGACGGAGCAGTGG
TACGAGGAGCGGTGCGGCAAGCTGCAGCCGCACATGTTAAACCCGTGCAC
GGCCGTCAAGTCGGTGGACGTGTGGGTGGACGTGGCGGCGGCATTGCGCA
CGCTCAAGCTGGCGCTGGAGCGGCTCGGCTACGCCGTGGGGCCGTGGATG
CGATAG