Ggra9268.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9268.t1
Unique Name	Ggra9268.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	496

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:638541..640028 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9268	Ggra9268	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 638541..640028 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9268.t1.start1	Ggra9268.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 638541..638543 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9268.t1.CDS1	Ggra9268.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 638541..640028 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9268.t1.exon1	Ggra9268.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 638541..640028 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9268.t1.stop1	Ggra9268.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 640026..640028 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9268.t1	Ggra9268.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 638541..640028 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:638541..640028+
coding sequence from alignment at tig00000075_pilon:638541..640028+

mRNA sequence

>Ggra9268.t1 ID=Ggra9268.t1|Name=Ggra9268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MPPPRRESTPREKAEMHDRNIKLDGDEHSMVELALLLLDGAEGVQRDTTR
AVQLLERASQHCRYPRAMFELAMLYDFGYGDIPPNPKRSQELYENAMHFR
RDGSATNNLAYLFERGTKQVPRNIHRAIQLYERAITQHENVVSMYNLAGL
LWSGDHGTPVDAPRALKLFKRAVKKGKDIESMVDLASALFEGGAGVPSDP
KRAVKWYTKAIKLNSMDAKEALAAIFEVGAESVPADPQKAVKLYEEVLAD
SKSVSAMINLGNLLLRGRGDVPQNPIRALQLFEEAAKQDDAIDARIHLAA
LLTKGTADIPANPPRAVQLYEDVIKEKADSRALTNLAVILELGAEGVSAD
QKRAVELYERAVDKKYAPAVFNLALIFKDGTESIPKDETRAMDLLETASK
QPSFKASVSAMVELAKLLDKGTSSSAPNPRRAVKLYKMAIERGSDKAKRC
LAALLAKGSKGVKADITMAIKLYTESADETGHPDAIKALSRLVGD*

spliced messenger RNA

>Ggra9268.t1 ID=Ggra9268.t1|Name=Ggra9268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000075_pilon:638541..640028+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCACCGCGTCGCGAATCGACGCCCCGAGAGAAGGCTGAAATGCA
TGACCGCAACATCAAGCTCGATGGTGATGAGCATTCCATGGTGGAGCTTG
CGCTACTCCTCCTTGACGGCGCCGAAGGCGTGCAACGTGATACAACCCGC
GCTGTGCAGCTCCTTGAACGGGCTTCTCAGCATTGCCGCTATCCGCGCGC
TATGTTCGAGCTGGCCATGTTGTATGACTTTGGATACGGCGATATTCCGC
CCAATCCGAAGCGTTCTCAGGAGTTGTATGAGAATGCCATGCATTTTCGG
AGAGATGGAAGTGCCACCAACAACCTTGCCTACCTGTTTGAGAGGGGAAC
TAAGCAGGTTCCTCGCAACATTCACCGAGCCATTCAGCTGTATGAAAGAG
CCATAACCCAACATGAGAATGTGGTTTCCATGTATAATCTTGCTGGCTTG
TTATGGTCTGGGGACCACGGAACCCCGGTCGACGCTCCCCGCGCTCTCAA
GCTCTTCAAGAGGGCAGTCAAGAAAGGGAAAGATATAGAATCAATGGTGG
ACTTGGCAAGCGCACTGTTCGAGGGTGGTGCAGGAGTGCCATCAGATCCG
AAGCGCGCTGTGAAATGGTATACGAAGGCCATCAAATTGAATAGTATGGA
CGCCAAGGAAGCTCTTGCGGCTATCTTTGAAGTAGGCGCAGAAAGCGTGC
CAGCCGACCCCCAAAAGGCAGTGAAGCTGTACGAAGAAGTACTGGCGGAC
AGCAAATCTGTGAGCGCAATGATAAATCTCGGCAATCTGCTTTTGCGTGG
AAGAGGTGATGTTCCCCAAAACCCCATTCGTGCGTTGCAGCTTTTTGAGG
AGGCTGCGAAACAAGACGATGCAATTGATGCCAGGATTCACTTAGCAGCG
CTGCTCACTAAGGGAACTGCAGACATTCCGGCAAATCCGCCACGAGCGGT
ACAACTGTACGAAGACGTCATCAAAGAGAAGGCTGATAGTCGCGCACTAA
CGAATCTTGCCGTTATACTGGAGCTGGGTGCTGAAGGTGTATCGGCGGAT
CAAAAGCGAGCGGTAGAGTTATACGAGCGAGCTGTTGATAAGAAGTATGC
CCCTGCTGTGTTTAATTTGGCTTTGATATTCAAAGATGGAACCGAATCTA
TCCCCAAGGATGAGACGAGGGCCATGGATCTGCTGGAAACGGCCTCCAAA
CAACCGAGTTTCAAGGCATCTGTATCTGCGATGGTAGAGTTGGCAAAATT
GCTGGACAAAGGAACCAGTTCCAGCGCACCAAATCCGAGACGAGCAGTCA
AGCTGTACAAGATGGCGATCGAGCGCGGCAGTGATAAGGCGAAGAGATGC
TTAGCGGCCTTGCTGGCGAAAGGTAGCAAAGGAGTTAAGGCGGACATTAC
AATGGCCATAAAGCTGTACACAGAATCAGCAGACGAGACTGGACATCCAG
ACGCAATTAAGGCGCTTTCGCGGCTTGTTGGTGACTAG

protein sequence of Ggra9268.t1

>Ggra9268.t1 ID=Ggra9268.t1|Name=Ggra9268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MPPPRRESTPREKAEMHDRNIKLDGDEHSMVELALLLLDGAEGVQRDTTR
AVQLLERASQHCRYPRAMFELAMLYDFGYGDIPPNPKRSQELYENAMHFR
RDGSATNNLAYLFERGTKQVPRNIHRAIQLYERAITQHENVVSMYNLAGL
LWSGDHGTPVDAPRALKLFKRAVKKGKDIESMVDLASALFEGGAGVPSDP
KRAVKWYTKAIKLNSMDAKEALAAIFEVGAESVPADPQKAVKLYEEVLAD
SKSVSAMINLGNLLLRGRGDVPQNPIRALQLFEEAAKQDDAIDARIHLAA
LLTKGTADIPANPPRAVQLYEDVIKEKADSRALTNLAVILELGAEGVSAD
QKRAVELYERAVDKKYAPAVFNLALIFKDGTESIPKDETRAMDLLETASK
QPSFKASVSAMVELAKLLDKGTSSSAPNPRRAVKLYKMAIERGSDKAKRC
LAALLAKGSKGVKADITMAIKLYTESADETGHPDAIKALSRLVGD*

mRNA from alignment at tig00000075_pilon:638541..640028+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9268.t1 ID=Ggra9268.t1|Name=Ggra9268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000075_pilon:638541..640028+ (Gracilaria gracilis GNS1m male)
ATGCCGCCACCGCGTCGCGAATCGACGCCCCGAGAGAAGGCTGAAATGCA
TGACCGCAACATCAAGCTCGATGGTGATGAGCATTCCATGGTGGAGCTTG
CGCTACTCCTCCTTGACGGCGCCGAAGGCGTGCAACGTGATACAACCCGC
GCTGTGCAGCTCCTTGAACGGGCTTCTCAGCATTGCCGCTATCCGCGCGC
TATGTTCGAGCTGGCCATGTTGTATGACTTTGGATACGGCGATATTCCGC
CCAATCCGAAGCGTTCTCAGGAGTTGTATGAGAATGCCATGCATTTTCGG
AGAGATGGAAGTGCCACCAACAACCTTGCCTACCTGTTTGAGAGGGGAAC
TAAGCAGGTTCCTCGCAACATTCACCGAGCCATTCAGCTGTATGAAAGAG
CCATAACCCAACATGAGAATGTGGTTTCCATGTATAATCTTGCTGGCTTG
TTATGGTCTGGGGACCACGGAACCCCGGTCGACGCTCCCCGCGCTCTCAA
GCTCTTCAAGAGGGCAGTCAAGAAAGGGAAAGATATAGAATCAATGGTGG
ACTTGGCAAGCGCACTGTTCGAGGGTGGTGCAGGAGTGCCATCAGATCCG
AAGCGCGCTGTGAAATGGTATACGAAGGCCATCAAATTGAATAGTATGGA
CGCCAAGGAAGCTCTTGCGGCTATCTTTGAAGTAGGCGCAGAAAGCGTGC
CAGCCGACCCCCAAAAGGCAGTGAAGCTGTACGAAGAAGTACTGGCGGAC
AGCAAATCTGTGAGCGCAATGATAAATCTCGGCAATCTGCTTTTGCGTGG
AAGAGGTGATGTTCCCCAAAACCCCATTCGTGCGTTGCAGCTTTTTGAGG
AGGCTGCGAAACAAGACGATGCAATTGATGCCAGGATTCACTTAGCAGCG
CTGCTCACTAAGGGAACTGCAGACATTCCGGCAAATCCGCCACGAGCGGT
ACAACTGTACGAAGACGTCATCAAAGAGAAGGCTGATAGTCGCGCACTAA
CGAATCTTGCCGTTATACTGGAGCTGGGTGCTGAAGGTGTATCGGCGGAT
CAAAAGCGAGCGGTAGAGTTATACGAGCGAGCTGTTGATAAGAAGTATGC
CCCTGCTGTGTTTAATTTGGCTTTGATATTCAAAGATGGAACCGAATCTA
TCCCCAAGGATGAGACGAGGGCCATGGATCTGCTGGAAACGGCCTCCAAA
CAACCGAGTTTCAAGGCATCTGTATCTGCGATGGTAGAGTTGGCAAAATT
GCTGGACAAAGGAACCAGTTCCAGCGCACCAAATCCGAGACGAGCAGTCA
AGCTGTACAAGATGGCGATCGAGCGCGGCAGTGATAAGGCGAAGAGATGC
TTAGCGGCCTTGCTGGCGAAAGGTAGCAAAGGAGTTAAGGCGGACATTAC
AATGGCCATAAAGCTGTACACAGAATCAGCAGACGAGACTGGACATCCAG
ACGCAATTAAGGCGCTTTCGCGGCTTGTTGGTGACTAG

Coding sequence (CDS) from alignment at tig00000075_pilon:638541..640028+

>Ggra9268.t1 ID=Ggra9268.t1|Name=Ggra9268.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000075_pilon:638541..640028+ (Gracilaria gracilis GNS1m male)
ATGCCGCCACCGCGTCGCGAATCGACGCCCCGAGAGAAGGCTGAAATGCA
TGACCGCAACATCAAGCTCGATGGTGATGAGCATTCCATGGTGGAGCTTG
CGCTACTCCTCCTTGACGGCGCCGAAGGCGTGCAACGTGATACAACCCGC
GCTGTGCAGCTCCTTGAACGGGCTTCTCAGCATTGCCGCTATCCGCGCGC
TATGTTCGAGCTGGCCATGTTGTATGACTTTGGATACGGCGATATTCCGC
CCAATCCGAAGCGTTCTCAGGAGTTGTATGAGAATGCCATGCATTTTCGG
AGAGATGGAAGTGCCACCAACAACCTTGCCTACCTGTTTGAGAGGGGAAC
TAAGCAGGTTCCTCGCAACATTCACCGAGCCATTCAGCTGTATGAAAGAG
CCATAACCCAACATGAGAATGTGGTTTCCATGTATAATCTTGCTGGCTTG
TTATGGTCTGGGGACCACGGAACCCCGGTCGACGCTCCCCGCGCTCTCAA
GCTCTTCAAGAGGGCAGTCAAGAAAGGGAAAGATATAGAATCAATGGTGG
ACTTGGCAAGCGCACTGTTCGAGGGTGGTGCAGGAGTGCCATCAGATCCG
AAGCGCGCTGTGAAATGGTATACGAAGGCCATCAAATTGAATAGTATGGA
CGCCAAGGAAGCTCTTGCGGCTATCTTTGAAGTAGGCGCAGAAAGCGTGC
CAGCCGACCCCCAAAAGGCAGTGAAGCTGTACGAAGAAGTACTGGCGGAC
AGCAAATCTGTGAGCGCAATGATAAATCTCGGCAATCTGCTTTTGCGTGG
AAGAGGTGATGTTCCCCAAAACCCCATTCGTGCGTTGCAGCTTTTTGAGG
AGGCTGCGAAACAAGACGATGCAATTGATGCCAGGATTCACTTAGCAGCG
CTGCTCACTAAGGGAACTGCAGACATTCCGGCAAATCCGCCACGAGCGGT
ACAACTGTACGAAGACGTCATCAAAGAGAAGGCTGATAGTCGCGCACTAA
CGAATCTTGCCGTTATACTGGAGCTGGGTGCTGAAGGTGTATCGGCGGAT
CAAAAGCGAGCGGTAGAGTTATACGAGCGAGCTGTTGATAAGAAGTATGC
CCCTGCTGTGTTTAATTTGGCTTTGATATTCAAAGATGGAACCGAATCTA
TCCCCAAGGATGAGACGAGGGCCATGGATCTGCTGGAAACGGCCTCCAAA
CAACCGAGTTTCAAGGCATCTGTATCTGCGATGGTAGAGTTGGCAAAATT
GCTGGACAAAGGAACCAGTTCCAGCGCACCAAATCCGAGACGAGCAGTCA
AGCTGTACAAGATGGCGATCGAGCGCGGCAGTGATAAGGCGAAGAGATGC
TTAGCGGCCTTGCTGGCGAAAGGTAGCAAAGGAGTTAAGGCGGACATTAC
AATGGCCATAAAGCTGTACACAGAATCAGCAGACGAGACTGGACATCCAG
ACGCAATTAAGGCGCTTTCGCGGCTTGTTGGTGACTAG