Ggra9265.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9265.t1
Unique NameGgra9265.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:630368..631831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G1I4
Preferred nameFLOT2
PFAMsBand_7,Flot
Max annot lvl2759|Eukaryota
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Evalue1.18e-31
EggNOG OGsCOG2268@1|root,KOG2668@2759|Eukaryota
Descriptionprotein localization to membrane raft
COG categoryU
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9265Ggra9265Gracilaria gracilis GNS1m malegenetig00000075_pilon 630368..631831 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9265.t1.start1Ggra9265.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 630368..630370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9265.t1.CDS1Ggra9265.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 630368..631831 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9265.t1.exon1Ggra9265.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 630368..631831 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9265.t1.stop1Ggra9265.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 631829..631831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9265.t1Ggra9265.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 630368..631831 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9265.t1 ID=Ggra9265.t1|Name=Ggra9265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=488bp
MGMFSRVITTAGPNTAILKTFGTSRVNVQIGGTVSFIPVLQRLDFLNLEL
RTINVETRQGISLSGARIHVLSCCQVKIQGWNPTSEHSAPGRPPGTRPGS
DLHTDEAAILLAAQHFLGKSSQQIDYAIKQTIAGHQRAIISTLTVEQLIH
DRDLFCEKVVDNCYRDLRNMGLAMVSYTVVAITDNDGYIDALGALENARI
QREKVENEAKHRNRASLNEMKRQVAAHVNQNKERIRAIFSQKQKAITDAK
AKANVDRARAVRGKAFSITTAEREAELLVKKKYAQAAEIAAELLVLRQTI
QQQRLAMEKTVQVEADARYYKRIIKSDRSIAKARARAEKEIEIARANAEA
QAQQVRKKGFAEAAVEASKIREKGLAEAQAILSKGLADAEIDIMKASTIR
AEGMAEMDVLEGRLQIWEENANEPFLLDHMIGDFQRQMRGIVEPLIRIDG
ITIVDQQDQEASVTNTINVLAAQLPALFDALVTSNLS*
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spliced messenger RNA

>Ggra9265.t1 ID=Ggra9265.t1|Name=Ggra9265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000075_pilon:630368..631831+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATGTTCAGCAGAGTTATTACGACTGCTGGTCCCAACACTGCCAT
TCTGAAGACTTTTGGAACGAGCCGAGTCAACGTACAGATAGGAGGAACTG
TCAGCTTCATTCCGGTTCTTCAAAGGTTAGACTTTTTAAACCTTGAGCTG
CGTACCATCAATGTCGAAACCCGTCAAGGCATTTCATTATCCGGCGCAAG
GATACACGTCCTCAGCTGCTGTCAGGTAAAGATTCAAGGTTGGAATCCTA
CATCAGAACACTCCGCTCCTGGCAGACCACCTGGAACGCGACCTGGCTCA
GATTTGCATACTGACGAGGCTGCCATTTTGCTGGCTGCTCAGCATTTTCT
TGGCAAGAGCTCGCAGCAGATTGACTATGCAATTAAGCAGACAATTGCCG
GCCACCAGAGGGCTATTATTAGCACTCTAACTGTTGAGCAACTCATCCAC
GACCGCGATTTGTTTTGCGAGAAAGTCGTCGATAACTGCTACCGTGATTT
ACGAAACATGGGCTTGGCCATGGTATCATATACAGTCGTTGCAATAACGG
ACAATGACGGCTACATAGATGCGTTGGGTGCCTTGGAAAACGCACGTATT
CAAAGGGAAAAGGTTGAGAATGAAGCAAAGCATCGCAATCGAGCTAGCCT
AAATGAGATGAAAAGGCAGGTAGCAGCTCACGTTAACCAGAACAAGGAAC
GTATACGAGCAATATTTTCgcaaaagcaaaaggcaataactgatgctaaa
gcaaaagcaaaCGTTGATCGCGCAAGGGCAGTTCGCGGGAAGGCATTTTC
TATCACTACAGCTGAGAGGGAAGCCGAACTATTGGTGAAAAAGAAGTATG
CTCAAGCAGCAGAGATAGCAGCTGAATTACTTGTGCTGCGTCAAACAATT
CAACAACAGAGACTGGCAATGGAGAAGACTGTTCAAGTAGAAGCAGACGC
AAGATATTATAAGCGCATTATTAAAAGCGACCGAAGCATTGCTAAAGCTC
GGGCTCGAGCAGAGAAAGAAATAGAAATAGCACGAGCAAATGCTGAGGCC
CAAGCCCAACAAGTGAGGAAGAAGGGATTTGCAGAAGCTGCCGTAGAGGC
TTCTAAAATCCGAGAGAAGGGTTTGGCAGAGGCCCAAGCAATACTGTCAA
AAGGTTTAGCCGATGCTGAAATTGATATCATGAAGGCAAGTACGATTCGA
GCCGAAGGAATGGCGGAAATGGATGTCCTCGAAGGCCGCCTCCAGATATG
GGAAGAGAATGCGAACGAACCGTTCTTGCTTGATCACATGATTGGCGATT
TCCAGCGACAAATGAGAGGAATAGTTGAACCTCTGATCAGAATTGATGGG
ATTACTATTGTTGATCAACAAGATCAAGAAGCAAGTGTGACAAATACAAT
TAACGTTTTGGCAGCCCAACTGCCGGCTCTATTCGACGCGCTGGTAACAA
GCAATCTTTCATGA
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protein sequence of Ggra9265.t1

>Ggra9265.t1 ID=Ggra9265.t1|Name=Ggra9265.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=488bp
MGMFSRVITTAGPNTAILKTFGTSRVNVQIGGTVSFIPVLQRLDFLNLEL
RTINVETRQGISLSGARIHVLSCCQVKIQGWNPTSEHSAPGRPPGTRPGS
DLHTDEAAILLAAQHFLGKSSQQIDYAIKQTIAGHQRAIISTLTVEQLIH
DRDLFCEKVVDNCYRDLRNMGLAMVSYTVVAITDNDGYIDALGALENARI
QREKVENEAKHRNRASLNEMKRQVAAHVNQNKERIRAIFSQKQKAITDAK
AKANVDRARAVRGKAFSITTAEREAELLVKKKYAQAAEIAAELLVLRQTI
QQQRLAMEKTVQVEADARYYKRIIKSDRSIAKARARAEKEIEIARANAEA
QAQQVRKKGFAEAAVEASKIREKGLAEAQAILSKGLADAEIDIMKASTIR
AEGMAEMDVLEGRLQIWEENANEPFLLDHMIGDFQRQMRGIVEPLIRIDG
ITIVDQQDQEASVTNTINVLAAQLPALFDALVTSNLS*
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mRNA from alignment at tig00000075_pilon:630368..631831+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9265.t1 ID=Ggra9265.t1|Name=Ggra9265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000075_pilon:630368..631831+ (Gracilaria gracilis GNS1m male)
ATGGGTATGTTCAGCAGAGTTATTACGACTGCTGGTCCCAACACTGCCAT
TCTGAAGACTTTTGGAACGAGCCGAGTCAACGTACAGATAGGAGGAACTG
TCAGCTTCATTCCGGTTCTTCAAAGGTTAGACTTTTTAAACCTTGAGCTG
CGTACCATCAATGTCGAAACCCGTCAAGGCATTTCATTATCCGGCGCAAG
GATACACGTCCTCAGCTGCTGTCAGGTAAAGATTCAAGGTTGGAATCCTA
CATCAGAACACTCCGCTCCTGGCAGACCACCTGGAACGCGACCTGGCTCA
GATTTGCATACTGACGAGGCTGCCATTTTGCTGGCTGCTCAGCATTTTCT
TGGCAAGAGCTCGCAGCAGATTGACTATGCAATTAAGCAGACAATTGCCG
GCCACCAGAGGGCTATTATTAGCACTCTAACTGTTGAGCAACTCATCCAC
GACCGCGATTTGTTTTGCGAGAAAGTCGTCGATAACTGCTACCGTGATTT
ACGAAACATGGGCTTGGCCATGGTATCATATACAGTCGTTGCAATAACGG
ACAATGACGGCTACATAGATGCGTTGGGTGCCTTGGAAAACGCACGTATT
CAAAGGGAAAAGGTTGAGAATGAAGCAAAGCATCGCAATCGAGCTAGCCT
AAATGAGATGAAAAGGCAGGTAGCAGCTCACGTTAACCAGAACAAGGAAC
GTATACGAGCAATATTTTCgcaaaagcaaaaggcaataactgatgctaaa
gcaaaagcaaaCGTTGATCGCGCAAGGGCAGTTCGCGGGAAGGCATTTTC
TATCACTACAGCTGAGAGGGAAGCCGAACTATTGGTGAAAAAGAAGTATG
CTCAAGCAGCAGAGATAGCAGCTGAATTACTTGTGCTGCGTCAAACAATT
CAACAACAGAGACTGGCAATGGAGAAGACTGTTCAAGTAGAAGCAGACGC
AAGATATTATAAGCGCATTATTAAAAGCGACCGAAGCATTGCTAAAGCTC
GGGCTCGAGCAGAGAAAGAAATAGAAATAGCACGAGCAAATGCTGAGGCC
CAAGCCCAACAAGTGAGGAAGAAGGGATTTGCAGAAGCTGCCGTAGAGGC
TTCTAAAATCCGAGAGAAGGGTTTGGCAGAGGCCCAAGCAATACTGTCAA
AAGGTTTAGCCGATGCTGAAATTGATATCATGAAGGCAAGTACGATTCGA
GCCGAAGGAATGGCGGAAATGGATGTCCTCGAAGGCCGCCTCCAGATATG
GGAAGAGAATGCGAACGAACCGTTCTTGCTTGATCACATGATTGGCGATT
TCCAGCGACAAATGAGAGGAATAGTTGAACCTCTGATCAGAATTGATGGG
ATTACTATTGTTGATCAACAAGATCAAGAAGCAAGTGTGACAAATACAAT
TAACGTTTTGGCAGCCCAACTGCCGGCTCTATTCGACGCGCTGGTAACAA
GCAATCTTTCATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:630368..631831+

>Ggra9265.t1 ID=Ggra9265.t1|Name=Ggra9265.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00000075_pilon:630368..631831+ (Gracilaria gracilis GNS1m male)
ATGGGTATGTTCAGCAGAGTTATTACGACTGCTGGTCCCAACACTGCCAT
TCTGAAGACTTTTGGAACGAGCCGAGTCAACGTACAGATAGGAGGAACTG
TCAGCTTCATTCCGGTTCTTCAAAGGTTAGACTTTTTAAACCTTGAGCTG
CGTACCATCAATGTCGAAACCCGTCAAGGCATTTCATTATCCGGCGCAAG
GATACACGTCCTCAGCTGCTGTCAGGTAAAGATTCAAGGTTGGAATCCTA
CATCAGAACACTCCGCTCCTGGCAGACCACCTGGAACGCGACCTGGCTCA
GATTTGCATACTGACGAGGCTGCCATTTTGCTGGCTGCTCAGCATTTTCT
TGGCAAGAGCTCGCAGCAGATTGACTATGCAATTAAGCAGACAATTGCCG
GCCACCAGAGGGCTATTATTAGCACTCTAACTGTTGAGCAACTCATCCAC
GACCGCGATTTGTTTTGCGAGAAAGTCGTCGATAACTGCTACCGTGATTT
ACGAAACATGGGCTTGGCCATGGTATCATATACAGTCGTTGCAATAACGG
ACAATGACGGCTACATAGATGCGTTGGGTGCCTTGGAAAACGCACGTATT
CAAAGGGAAAAGGTTGAGAATGAAGCAAAGCATCGCAATCGAGCTAGCCT
AAATGAGATGAAAAGGCAGGTAGCAGCTCACGTTAACCAGAACAAGGAAC
GTATACGAGCAATATTTTCgcaaaagcaaaaggcaataactgatgctaaa
gcaaaagcaaaCGTTGATCGCGCAAGGGCAGTTCGCGGGAAGGCATTTTC
TATCACTACAGCTGAGAGGGAAGCCGAACTATTGGTGAAAAAGAAGTATG
CTCAAGCAGCAGAGATAGCAGCTGAATTACTTGTGCTGCGTCAAACAATT
CAACAACAGAGACTGGCAATGGAGAAGACTGTTCAAGTAGAAGCAGACGC
AAGATATTATAAGCGCATTATTAAAAGCGACCGAAGCATTGCTAAAGCTC
GGGCTCGAGCAGAGAAAGAAATAGAAATAGCACGAGCAAATGCTGAGGCC
CAAGCCCAACAAGTGAGGAAGAAGGGATTTGCAGAAGCTGCCGTAGAGGC
TTCTAAAATCCGAGAGAAGGGTTTGGCAGAGGCCCAAGCAATACTGTCAA
AAGGTTTAGCCGATGCTGAAATTGATATCATGAAGGCAAGTACGATTCGA
GCCGAAGGAATGGCGGAAATGGATGTCCTCGAAGGCCGCCTCCAGATATG
GGAAGAGAATGCGAACGAACCGTTCTTGCTTGATCACATGATTGGCGATT
TCCAGCGACAAATGAGAGGAATAGTTGAACCTCTGATCAGAATTGATGGG
ATTACTATTGTTGATCAACAAGATCAAGAAGCAAGTGTGACAAATACAAT
TAACGTTTTGGCAGCCCAACTGCCGGCTCTATTCGACGCGCTGGTAACAA
GCAATCTTTCATGA
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