Ggra926.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra926.t1
Unique NameGgra926.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length729
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:638909..641810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra926Ggra926Gracilaria gracilis GNS1m malegenetig00000049_pilon 638909..641810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1Ggra926.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 638909..641810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1.stop1Ggra926.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 638909..638911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1.CDS1Ggra926.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 638909..639279 -
Ggra926.t1.CDS2Ggra926.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 639631..640562 -
Ggra926.t1.CDS3Ggra926.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000049_pilon 640818..640976 -
Ggra926.t1.CDS4Ggra926.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000049_pilon 641086..641810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1.exon1Ggra926.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 638909..639279 -
Ggra926.t1.exon2Ggra926.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 639631..640562 -
Ggra926.t1.exon3Ggra926.t1.exon3Gracilaria gracilis GNS1m maleexontig00000049_pilon 640818..640976 -
Ggra926.t1.exon4Ggra926.t1.exon4Gracilaria gracilis GNS1m maleexontig00000049_pilon 641086..641810 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1.intron1Ggra926.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 639280..639630 -
Ggra926.t1.intron2Ggra926.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000049_pilon 640563..640817 -
Ggra926.t1.intron3Ggra926.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000049_pilon 640977..641085 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra926.t1.start1Ggra926.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 641808..641810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra926.t1 ID=Ggra926.t1|Name=Ggra926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp
MAEVSLFNSMLDGFMSILSATLEDEGIQAVVERGEKEIRQFSGIISERLR
EDADEFGSRMESVCKGVKRLPLKQGNRQRSIRTTTSAREGRPGISDLSVT
AFVIFKETNIDRIQVTVVRTKKQNEGVIISPSPVSLTSNDTIHRLLWKIT
QLSNNLRLFTSDDLKMERDVTEPTVYIHALTRGQVHDIINLAFATGSLYR
FCQQFCQVIGRTKGVILKSEGEGEILRISEVGAIDHYHVVLRHDWPNVFL
RKRCANRRIPEKKKEPGSSYQPEGNEEGQTKSQLLPEAVDTGRTRDQSVV
IWDTPGMNDQNGMDSAFHKILVKRIRENVTVSSVVLVSKDGVRVPHSLIQ
AVSSYRESFGESFMRGLCVCIGINQQKTDHTKLQRRRRLWVRSLAAVLRY
NFPSERIFCYDATDKDFQPELYRFKEWLINSEVHLPGAGQTIYRGLSQMR
NGGPITEAKSNVQLASEEALRSIRTSVASKGLKKIEYDKKGKHGPGLYFS
LKPVDSSSQENIFDVGITSSGRAASDLLQSVDWKQKLYGTSKKDKLLDFL
KGLDLNTFALMEKVRKVIPDRRKDTVQIHYLLWDMSSEFTKELSQTVDHA
LNASLGDGIGVGSIGSGSGIGVERMVVRRGVVVGALVVGGLVVGGLVVGG
LVVGGLVVGGLVVGGLVVGGLVVGGLVAGGLVAGGLVIGGLVVGGLVKPV
SDAVETVEAGGGGSGRRNSAPTPTGRGA*
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spliced messenger RNA

>Ggra926.t1 ID=Ggra926.t1|Name=Ggra926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000049_pilon:638909..641810- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGTATCCTTATTTAACAGTATGCTTGATGGATTCATGTCGAT
TCTAAGTGCAACTTTGGAGGACGAAGGCATCCAAGCCGTGGTTGAAAGGG
GAGAAAAGGAGATTAGGCAGTTCTCTGGAATTATATCAGAACGATTGCGT
GAAGATGCGGACGAATTTGGATCTCGAATGGAGTCTGTCTGCAAGGGTGT
GAAGCGCCTTCCTCTTAAGCAGGGAAACAGACAGCGAAGTATAAGAACAA
CAACGTCTGCCAGAGAAGGACGTCCAGGAATATCTGACTTATCCGTTACC
GCTTTTGTAATCTTCAAGGAGACAAACATTGACCGAATTCAAGTAACTGT
TGTAAGAACCAAGAAACAAAATGAAGGAGTCATAATCAGTCCTTCCCCTG
TTTCTCTCACTTCAAATGACACCATTCATAGACTTCTGTGGAAAATAACT
CAACTTTCTAACAACCTACGGCTTTTTACTTCAGATGATTTGAAGATGGA
AAGAGATGTGACTGAACCAACTGTGTACATTCACGCCCTTACGAGGGGCC
AGGTGCATGATATCATTAACTTAGCCTTCGCTACTGGAAGCCTATATCGG
TTCTGTCAGCAATTTTGTCAAGTTATTGGAAGAACAAAGGGAGTAATTTT
AAAGTCAGAAGGCGAGGGGGAGATTCTTCGAATATCAGAGGTCGGCGCTA
TAGACCACTACCATGTGGTTTTGAGACATGACTGGCCAAATGTGTTTCTC
AGAAAAAGATGCGCGAATAGAAGGATTCCGGAGAAGAAAAAGGAGCCTGG
AAGTTCGTACCAGCCTGAAGGGAATGAAGAAGGTCAAACGAAATCGCAAC
TTCTGCCAGAAGCCGTAGATACTGGCAGGACTAGGGACCAATCCGTAGTC
ATATGGGACACACCAGGAATGAATGATCAGAATGGAATGGATTCCGCATT
TCACAAGATTCTAGTCAAGAGAATTCGGGAGAATGTCACTGTCTCTTCAG
TTGTTTTAGTTTCAAAGGACGGAGTAAGGGTACCACACAGCTTGATACAA
GCCGTTTCATCTTACAGGGAGTCTTTTGGAGAGTCCTTCATGCGCGGTTT
ATGTGTTTGTATCGGAATCAATCAACAGAAGACGGACCATACAAAATTGC
AAAGGCGGAGGCGTCTTTGGGTGCGTAGTTTAGCTGCAGTGCTCCGATAT
AATTTTCCAAGTGAACGTATTTTCTGCTACGATGCAACAGACAAAGATTT
TCAGCCTGAGCTCTATCGGTTCAAAGAGTGGCTCATTAATTCCGAGGTGC
ATTTGCCTGGGGCGGGACAGACAATATATCGTGGATTAAGTCAAATGAGA
AACGGTGGACCTATCACCGAAGCAAAGTCAAATGTTCAACTTGCTTCTGA
AGAAGCTTTGCGATCAATACGGACGAGCGTTGCTTCCAAAGGTCTTAAGA
AGATTGAGTATGATAAGAAAGGAAAGCACGGACCTGGGCTCTACTTTTCC
CTGAAGCCAGTGGACAGTTCCTCGCAGGAGAACATATTTGATGTTGGAAT
AACATCTAGTGGGAGAGCCGCATCAGATTTGCTGCAATCCGTCGATTGGA
AGCAGAAACTGTATGGAACCTCAAAGAAAGATAAGCTTCTTGACTTCTTG
AAAGGGTTAGATCTAAATACGTTTGCATTAATGGAAAAGGTACGCAAAGT
CATACCAGACAGGAGGAAGGATACCGTTCAGATTCACTACCTTCTGTGGG
ACATGAGTTCAGAATTCACCAAAGAGTTATCCCAGACAGTGGATCATGCG
CTGAATGCATCGTTAGGAGATGGTATTGGGGTCGGTTCCATCGGCTCCGG
CTCAGGCATCGGAGTAGAACGCATGGTTGTGCGTCGAGGAGTTGTAGTCG
GAGCCCTTGTAGTGGGCGGTCTCGTAGTGGGCGGTCTCGTCGTGGGCGGT
CTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGT
CGTGGGCGGTCTCGTCGTGGGCGGTCTCGTTGCGGGCGGTCTCGTTGCGG
GCGGTCTCGTCATCGGAGGTCTCGTGGTCGGCGGTCTGGTGAAACCAGTG
AGCGACGCTGTTGAAACGGTGGAGGCAGGCGGAGGGGGAAGTGGTCGAAG
AAATTCTGCTCCGACGCCGACGGGACGAGGGGCCTGA
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protein sequence of Ggra926.t1

>Ggra926.t1 ID=Ggra926.t1|Name=Ggra926.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=729bp
MAEVSLFNSMLDGFMSILSATLEDEGIQAVVERGEKEIRQFSGIISERLR
EDADEFGSRMESVCKGVKRLPLKQGNRQRSIRTTTSAREGRPGISDLSVT
AFVIFKETNIDRIQVTVVRTKKQNEGVIISPSPVSLTSNDTIHRLLWKIT
QLSNNLRLFTSDDLKMERDVTEPTVYIHALTRGQVHDIINLAFATGSLYR
FCQQFCQVIGRTKGVILKSEGEGEILRISEVGAIDHYHVVLRHDWPNVFL
RKRCANRRIPEKKKEPGSSYQPEGNEEGQTKSQLLPEAVDTGRTRDQSVV
IWDTPGMNDQNGMDSAFHKILVKRIRENVTVSSVVLVSKDGVRVPHSLIQ
AVSSYRESFGESFMRGLCVCIGINQQKTDHTKLQRRRRLWVRSLAAVLRY
NFPSERIFCYDATDKDFQPELYRFKEWLINSEVHLPGAGQTIYRGLSQMR
NGGPITEAKSNVQLASEEALRSIRTSVASKGLKKIEYDKKGKHGPGLYFS
LKPVDSSSQENIFDVGITSSGRAASDLLQSVDWKQKLYGTSKKDKLLDFL
KGLDLNTFALMEKVRKVIPDRRKDTVQIHYLLWDMSSEFTKELSQTVDHA
LNASLGDGIGVGSIGSGSGIGVERMVVRRGVVVGALVVGGLVVGGLVVGG
LVVGGLVVGGLVVGGLVVGGLVVGGLVAGGLVAGGLVIGGLVVGGLVKPV
SDAVETVEAGGGGSGRRNSAPTPTGRGA*
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mRNA from alignment at tig00000049_pilon:638909..641810-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra926.t1 ID=Ggra926.t1|Name=Ggra926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2902bp|location=Sequence derived from alignment at tig00000049_pilon:638909..641810- (Gracilaria gracilis GNS1m male)
ATGGCAGAAGTATCCTTATTTAACAGTATGCTTGATGGATTCATGTCGAT
TCTAAGTGCAACTTTGGAGGACGAAGGCATCCAAGCCGTGGTTGAAAGGG
GAGAAAAGGAGATTAGGCAGTTCTCTGGAATTATATCAGAACGATTGCGT
GAAGATGCGGACGAATTTGGATCTCGAATGGAGTCTGTCTGCAAGGGTGT
GAAGCGCCTTCCTCTTAAGCAGGGAAACAGACAGCGAAGTATAAGAACAA
CAACGTCTGCCAGAGAAGGACGTCCAGGAATATCTGACTTATCCGTTACC
GCTTTTGTAATCTTCAAGGAGACAAACATTGACCGAATTCAAGTAACTGT
TGTAAGAACCAAGAAACAAAATGAAGGAGTCATAATCAGTCCTTCCCCTG
TTTCTCTCACTTCAAATGACACCATTCATAGACTTCTGTGGAAAATAACT
CAACTTTCTAACAACCTACGGCTTTTTACTTCAGATGATTTGAAGATGGA
AAGAGATGTGACTGAACCAACTGTGTACATTCACGCCCTTACGAGGGGCC
AGGTGCATGATATCATTAACTTAGCCTTCGCTACTGGAAGCCTATATCGG
TTCTGTCAGCAATTTTGTCAAGTTATTGGAAGAACAAAGGGAGTAATTTT
AAAGTCAGAAGGCGAGGGGGAGATTCTTCGAATATCAGAGGTCGGCGCTA
TAGACCACTACCATGTGGTTTTGAGGTACGTCATCGAAAACAATAGCTAA
GAGCGGGATGACTCTAGTAATAACTTTTTCCAAGCTCACCAATATGATTC
TTTTTTCCAACTTCTACTTGATGAATATCAAAAGACATGACTGGCCAAAT
GTGTTTCTCAGAAAAAGATGCGCGAATAGAAGGATTCCGGAGAAGAAAAA
GGAGCCTGGAAGTTCGTACCAGCCTGAAGGGAATGAAGAAGGTCAAACGA
AATCGCAACTTCTGCCAGAAGCCGTAGATACTGGCAGGACTAGGTCAGCC
CTATCCCCTCCAACGAGAGACAGAGATTTACGTGAAGCAACAACAGCAGA
CCACCAGGAAAGCAGTAAAAACTCTTCCTCAAAAAGCAGTTCGGTGACAG
AGACAAGGAATGTGTATTTGTTAGGAGAAACAGGGGCAGGAAAATCCACG
TTAGGGAATGTATTAACTACGAGTGAGGCTTTTAAAGTATCTCACTCTGG
TTGTGGAACTTTCAACATGTCTTCGGGACGGCTCTACATGCCAGACAGGG
ACCAATCCGTAGTCATATGGGACACACCAGGAATGAATGATCAGAATGGA
ATGGATTCCGCATTTCACAAGATTCTAGTCAAGAGAATTCGGGAGAATGT
CACTGTCTCTTCAGTTGTTTTAGTTTCAAAGGACGGAGTAAGGGTACCAC
ACAGCTTGATACAAGCCGTTTCATCTTACAGGGAGTCTTTTGGAGAGTCC
TTCATGCGCGGTTTATGTGTTTGTATCGGAATCAATCAACAGAAGACGGA
CCATACAAAATTGCAAAGGCGGAGGCGTCTTTGGGTGCGTAGTTTAGCTG
CAGTGCTCCGATATAATTTTCCAAGTGAACGTATTTTCTGCTACGATGCA
ACAGACAAAGATTTTCAGCCTGAGCTCTATCGGTTCAAAGAGTGGCTCAT
TAATTCCGAGGTGCATTTGCCTGGGGCGGGACAGACAATATATCGTGGAT
TAAGTCAAATGAGAAACGGTGGACCTATCACCGAAGCAAAGTCAAATGTT
CAACTTGCTTCTGAAGAAGCTTTGCGATCAATACGGACGAGCGTTGCTTC
CAAAGGTCTTAAGAAGATTGAGTATGATAAGAAAGGAAAGCACGGACCTG
GGCTCTACTTTTCCCTGAAGCCAGTGGACAGTTCCTCGCAGGAGAACATA
TTTGATGTTGGAATAACATCTAGTGGGAGAGCCGCATCAGATTTGCTGCA
ATCCGTCGATTGGAAGCAGAAACTGTATGGAACCTCAAAGAAAGATAAGC
TTCTTGACTTCTTGAAAGGGTTAGATCTAAATACGTTTGCATTAATGGAA
AAGGTACGCAAAGTCATACCAGACAGGAGGAAGGATACCGTTCAGATTCA
CTACCTTCTGTGGGACATGAGTTCAGAATTCACCAAAGAGTTATCCCAGA
CAGTGGATCATGCGCTGAATGCATCGTTAGGTATTGGAAGGAAAGAAGGG
GTCTAGTCTAGTTCAAAATGAGCTAAATGGATACTTTCGGGAGATAGACA
ATCGCTGACTTCATCTATAGTCACTAGTTTTTACGACTGGATTCAAATAT
GTTCTTTGAAGGGGACACAGAAAAGTTCAACACCTCAGATGCAGTGAATT
AACCATCGCGAATTTTCCAGGCAAAACTATTACCGTTACTCTTCCCCTTC
AGTTCTTCAGGATAACTCAAACCTCATTCTTCTTCAGTAAGGATTTGCGT
GTCGCTTGAAGTATCTCGGCAGGTAGTAGAAGTGGAAGAACGAAAACTTC
TGGCGCTTGGGACGAGTGCCCATTGCTTCAGGAGATGGTATTGGGGTCGG
TTCCATCGGCTCCGGCTCAGGCATCGGAGTAGAACGCATGGTTGTGCGTC
GAGGAGTTGTAGTCGGAGCCCTTGTAGTGGGCGGTCTCGTAGTGGGCGGT
CTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGT
CGTGGGCGGTCTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGTTGCGG
GCGGTCTCGTTGCGGGCGGTCTCGTCATCGGAGGTCTCGTGGTCGGCGGT
CTGGTGAAACCAGTGAGCGACGCTGTTGAAACGGTGGAGGCAGGCGGAGG
GGGAAGTGGTCGAAGAAATTCTGCTCCGACGCCGACGGGACGAGGGGCCT
GA
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Coding sequence (CDS) from alignment at tig00000049_pilon:638909..641810-

>Ggra926.t1 ID=Ggra926.t1|Name=Ggra926.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2187bp|location=Sequence derived from alignment at tig00000049_pilon:638909..641810- (Gracilaria gracilis GNS1m male)
ATGGCAGAAGTATCCTTATTTAACAGTATGCTTGATGGATTCATGTCGAT
TCTAAGTGCAACTTTGGAGGACGAAGGCATCCAAGCCGTGGTTGAAAGGG
GAGAAAAGGAGATTAGGCAGTTCTCTGGAATTATATCAGAACGATTGCGT
GAAGATGCGGACGAATTTGGATCTCGAATGGAGTCTGTCTGCAAGGGTGT
GAAGCGCCTTCCTCTTAAGCAGGGAAACAGACAGCGAAGTATAAGAACAA
CAACGTCTGCCAGAGAAGGACGTCCAGGAATATCTGACTTATCCGTTACC
GCTTTTGTAATCTTCAAGGAGACAAACATTGACCGAATTCAAGTAACTGT
TGTAAGAACCAAGAAACAAAATGAAGGAGTCATAATCAGTCCTTCCCCTG
TTTCTCTCACTTCAAATGACACCATTCATAGACTTCTGTGGAAAATAACT
CAACTTTCTAACAACCTACGGCTTTTTACTTCAGATGATTTGAAGATGGA
AAGAGATGTGACTGAACCAACTGTGTACATTCACGCCCTTACGAGGGGCC
AGGTGCATGATATCATTAACTTAGCCTTCGCTACTGGAAGCCTATATCGG
TTCTGTCAGCAATTTTGTCAAGTTATTGGAAGAACAAAGGGAGTAATTTT
AAAGTCAGAAGGCGAGGGGGAGATTCTTCGAATATCAGAGGTCGGCGCTA
TAGACCACTACCATGTGGTTTTGAGACATGACTGGCCAAATGTGTTTCTC
AGAAAAAGATGCGCGAATAGAAGGATTCCGGAGAAGAAAAAGGAGCCTGG
AAGTTCGTACCAGCCTGAAGGGAATGAAGAAGGTCAAACGAAATCGCAAC
TTCTGCCAGAAGCCGTAGATACTGGCAGGACTAGGGACCAATCCGTAGTC
ATATGGGACACACCAGGAATGAATGATCAGAATGGAATGGATTCCGCATT
TCACAAGATTCTAGTCAAGAGAATTCGGGAGAATGTCACTGTCTCTTCAG
TTGTTTTAGTTTCAAAGGACGGAGTAAGGGTACCACACAGCTTGATACAA
GCCGTTTCATCTTACAGGGAGTCTTTTGGAGAGTCCTTCATGCGCGGTTT
ATGTGTTTGTATCGGAATCAATCAACAGAAGACGGACCATACAAAATTGC
AAAGGCGGAGGCGTCTTTGGGTGCGTAGTTTAGCTGCAGTGCTCCGATAT
AATTTTCCAAGTGAACGTATTTTCTGCTACGATGCAACAGACAAAGATTT
TCAGCCTGAGCTCTATCGGTTCAAAGAGTGGCTCATTAATTCCGAGGTGC
ATTTGCCTGGGGCGGGACAGACAATATATCGTGGATTAAGTCAAATGAGA
AACGGTGGACCTATCACCGAAGCAAAGTCAAATGTTCAACTTGCTTCTGA
AGAAGCTTTGCGATCAATACGGACGAGCGTTGCTTCCAAAGGTCTTAAGA
AGATTGAGTATGATAAGAAAGGAAAGCACGGACCTGGGCTCTACTTTTCC
CTGAAGCCAGTGGACAGTTCCTCGCAGGAGAACATATTTGATGTTGGAAT
AACATCTAGTGGGAGAGCCGCATCAGATTTGCTGCAATCCGTCGATTGGA
AGCAGAAACTGTATGGAACCTCAAAGAAAGATAAGCTTCTTGACTTCTTG
AAAGGGTTAGATCTAAATACGTTTGCATTAATGGAAAAGGTACGCAAAGT
CATACCAGACAGGAGGAAGGATACCGTTCAGATTCACTACCTTCTGTGGG
ACATGAGTTCAGAATTCACCAAAGAGTTATCCCAGACAGTGGATCATGCG
CTGAATGCATCGTTAGGAGATGGTATTGGGGTCGGTTCCATCGGCTCCGG
CTCAGGCATCGGAGTAGAACGCATGGTTGTGCGTCGAGGAGTTGTAGTCG
GAGCCCTTGTAGTGGGCGGTCTCGTAGTGGGCGGTCTCGTCGTGGGCGGT
CTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGTCGTGGGCGGTCTCGT
CGTGGGCGGTCTCGTCGTGGGCGGTCTCGTTGCGGGCGGTCTCGTTGCGG
GCGGTCTCGTCATCGGAGGTCTCGTGGTCGGCGGTCTGGTGAAACCAGTG
AGCGACGCTGTTGAAACGGTGGAGGCAGGCGGAGGGGGAAGTGGTCGAAG
AAATTCTGCTCCGACGCCGACGGGACGAGGGGCCTGA
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