Ggra9259.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9259.t1
Unique NameGgra9259.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:613634..614402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1137268.AZXF01000018_gene532
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue3.4e-16
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria,4EJUV@85012|Streptosporangiales
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9259Ggra9259Gracilaria gracilis GNS1m malegenetig00000075_pilon 613634..614402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1Ggra9259.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 613634..614402 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1.start1Ggra9259.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 613634..613636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1.CDS1Ggra9259.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 613634..614095 +
Ggra9259.t1.CDS2Ggra9259.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 614199..614402 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1.exon1Ggra9259.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 613634..614095 +
Ggra9259.t1.exon2Ggra9259.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 614199..614402 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1.intron1Ggra9259.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 614096..614198 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9259.t1.stop1Ggra9259.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 614400..614402 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9259.t1 ID=Ggra9259.t1|Name=Ggra9259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MIARPKNEPWPACSGTNHTLPLIPILQLRADDCPDLWLSLGKQVLQIIWC
PRDSYSMPHYEGGQEHYRSIPKIFWRTCNQLNEYVGQDILEPDESCIPHE
CALYTETVSQFPSLCIDKEPLLRDVNGWIVQNGKEALRPIGAEDDPEPYE
VSFSVSTNYANAPSRWVPAHGDSTSEYSRNLCFGDAMPLNVFACATCENT
PYKWKLQSLSESAMAEPARVQ*
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spliced messenger RNA

>Ggra9259.t1 ID=Ggra9259.t1|Name=Ggra9259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000075_pilon:613634..614402+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCCCGGCCGAAAAACGAACCGTGGCCTGCTTGTTCCGGCACAAA
TCACACACTACCGCTCATTCCCATCCTACAGCTCCGTGCAGACGACTGTC
CAGATCTTTGGCTTTCACTGGGAAAGCAAGTCTTGCAGATAATTTGGTGC
CCCCGTGACTCGTATTCTATGCCTCACTATGAAGGCGGTCAAGAGCACTA
CCGCTCCATCCCAAAGATATTCTGGCGCACTTGTAACCAGCTGAACGAAT
ACGTTGGACAAGATATTCTAGAGCCAGATGAGTCTTGTATTCCACATGAA
TGCGCGCTATACACTGAGACTGTATCCCAGTTCCCTTCCCTTTGCATCGA
CAAGGAGCCACTTCTGAGAGATGTGAATGGGTGGATTGTGCAGAATGGAA
AGGAAGCCTTACGCCCCATTGGTGCTGAGGATGACCCAGAGCCATACGAG
GTGTCATTCTCTGTGAGCACGAATTACGCCAATGCACCATCTCGATGGGT
GCCAGCTCATGGAGATTCCACTTCTGAGTATTCTCGTAATCTTTGCTTTG
GTGACGCTATGCCACTTAATGTGTTTGCTTGCGCCACATGTGAAAACACA
CCCTATAAATGGAAACTACAATCATTAAGCGAGAGTGCAATGGCAGAACC
TGCCAGAGTTCAATGA
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protein sequence of Ggra9259.t1

>Ggra9259.t1 ID=Ggra9259.t1|Name=Ggra9259.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MIARPKNEPWPACSGTNHTLPLIPILQLRADDCPDLWLSLGKQVLQIIWC
PRDSYSMPHYEGGQEHYRSIPKIFWRTCNQLNEYVGQDILEPDESCIPHE
CALYTETVSQFPSLCIDKEPLLRDVNGWIVQNGKEALRPIGAEDDPEPYE
VSFSVSTNYANAPSRWVPAHGDSTSEYSRNLCFGDAMPLNVFACATCENT
PYKWKLQSLSESAMAEPARVQ*
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mRNA from alignment at tig00000075_pilon:613634..614402+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9259.t1 ID=Ggra9259.t1|Name=Ggra9259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=769bp|location=Sequence derived from alignment at tig00000075_pilon:613634..614402+ (Gracilaria gracilis GNS1m male)
ATGATTGCCCGGCCGAAAAACGAACCGTGGCCTGCTTGTTCCGGCACAAA
TCACACACTACCGCTCATTCCCATCCTACAGCTCCGTGCAGACGACTGTC
CAGATCTTTGGCTTTCACTGGGAAAGCAAGTCTTGCAGATAATTTGGTGC
CCCCGTGACTCGTATTCTATGCCTCACTATGAAGGCGGTCAAGAGCACTA
CCGCTCCATCCCAAAGATATTCTGGCGCACTTGTAACCAGCTGAACGAAT
ACGTTGGACAAGATATTCTAGAGCCAGATGAGTCTTGTATTCCACATGAA
TGCGCGCTATACACTGAGACTGTATCCCAGTTCCCTTCCCTTTGCATCGA
CAAGGAGCCACTTCTGAGAGATGTGAATGGGTGGATTGTGCAGAATGGAA
AGGAAGCCTTACGCCCCATTGGTGCTGAGGATGACCCAGAGCCATACGAG
GTGTCATTCTCTGTATGTCCCTTGTCAAAGGTTGGCTGATTCTGTCGTTG
GGATCACGATCTTCAGGACATGATATGCAACCGCTGCAAAAGACCGATGC
ACTTTTTGCTTATAGGTGAGCACGAATTACGCCAATGCACCATCTCGATG
GGTGCCAGCTCATGGAGATTCCACTTCTGAGTATTCTCGTAATCTTTGCT
TTGGTGACGCTATGCCACTTAATGTGTTTGCTTGCGCCACATGTGAAAAC
ACACCCTATAAATGGAAACTACAATCATTAAGCGAGAGTGCAATGGCAGA
ACCTGCCAGAGTTCAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:613634..614402+

>Ggra9259.t1 ID=Ggra9259.t1|Name=Ggra9259.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000075_pilon:613634..614402+ (Gracilaria gracilis GNS1m male)
ATGATTGCCCGGCCGAAAAACGAACCGTGGCCTGCTTGTTCCGGCACAAA
TCACACACTACCGCTCATTCCCATCCTACAGCTCCGTGCAGACGACTGTC
CAGATCTTTGGCTTTCACTGGGAAAGCAAGTCTTGCAGATAATTTGGTGC
CCCCGTGACTCGTATTCTATGCCTCACTATGAAGGCGGTCAAGAGCACTA
CCGCTCCATCCCAAAGATATTCTGGCGCACTTGTAACCAGCTGAACGAAT
ACGTTGGACAAGATATTCTAGAGCCAGATGAGTCTTGTATTCCACATGAA
TGCGCGCTATACACTGAGACTGTATCCCAGTTCCCTTCCCTTTGCATCGA
CAAGGAGCCACTTCTGAGAGATGTGAATGGGTGGATTGTGCAGAATGGAA
AGGAAGCCTTACGCCCCATTGGTGCTGAGGATGACCCAGAGCCATACGAG
GTGTCATTCTCTGTGAGCACGAATTACGCCAATGCACCATCTCGATGGGT
GCCAGCTCATGGAGATTCCACTTCTGAGTATTCTCGTAATCTTTGCTTTG
GTGACGCTATGCCACTTAATGTGTTTGCTTGCGCCACATGTGAAAACACA
CCCTATAAATGGAAACTACAATCATTAAGCGAGAGTGCAATGGCAGAACC
TGCCAGAGTTCAATGA
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