Ggra9258.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9258.t1
Unique NameGgra9258.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:611518..612250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LR14
Preferred nameMBF1
PFAMsHTH_3,MBF1
Max annot lvl2759|Eukaryota
KEGG koko:K03627,ko:K14775
GOsGO:0000160,GO:0001101,GO:0003158,GO:0003674,GO:0003676,GO:0003700,GO:0003712,GO:0003713,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009723,GO:0009725,GO:0009737,GO:0009755,GO:0009873,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019216,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030855,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0033993,GO:0035556,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0044093,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045446,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071310,GO:0071369,GO:0071495,GO:0080090,GO:0097159,GO:0097305,GO:0140110,GO:1901363,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue6.97e-31
EggNOG OGsCOG1813@1|root,KOG3398@2759|Eukaryota
Descriptionsequence-specific DNA binding
COG categoryK
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9258Ggra9258Gracilaria gracilis GNS1m malegenetig00000075_pilon 611518..612250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1Ggra9258.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 611518..612250 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1.stop1Ggra9258.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 611518..611520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1.CDS1Ggra9258.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 611518..611577 -
Ggra9258.t1.CDS2Ggra9258.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 611662..611810 -
Ggra9258.t1.CDS3Ggra9258.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 611901..611975 -
Ggra9258.t1.CDS4Ggra9258.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000075_pilon 612080..612154 -
Ggra9258.t1.CDS5Ggra9258.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000075_pilon 612226..612250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1.exon1Ggra9258.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 611518..611577 -
Ggra9258.t1.exon2Ggra9258.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 611662..611810 -
Ggra9258.t1.exon3Ggra9258.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 611901..611975 -
Ggra9258.t1.exon4Ggra9258.t1.exon4Gracilaria gracilis GNS1m maleexontig00000075_pilon 612080..612154 -
Ggra9258.t1.exon5Ggra9258.t1.exon5Gracilaria gracilis GNS1m maleexontig00000075_pilon 612226..612250 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1.intron1Ggra9258.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 611578..611661 -
Ggra9258.t1.intron2Ggra9258.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 611811..611900 -
Ggra9258.t1.intron3Ggra9258.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000075_pilon 611976..612079 -
Ggra9258.t1.intron4Ggra9258.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000075_pilon 612155..612225 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1.start1Ggra9258.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 612248..612250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=128bp
MSQQDWEKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNARRGDSNMAKL
DAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYEN
GKAIPNGQIIVKIERALGTKLPRPVKK*
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spliced messenger RNA

>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000075_pilon:611518..612250- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAGCAAGATTGGGAAAAGGTCGTGATTCGTCCGAAGGCTTCCTC
CTCCAAGAAGCCAGAAGCTGGAGCTGGCGGCGCTCCAACGGAGAAAAAGT
TTGCCGCCGGTTCAAACGCAAGGCGAGGTGACTCTAACATGGCCAAACTG
GATGCGGAAACCGAGAACCTTTCACACAAGAGAGTCGGTCTCACACTAGG
GAAGGCCATTCAAAAGGCTCGCACGACGAAGAAAATGACGCAAGCCGACC
TGGCCAAAATCATAAACGAGAAACCGGCCGTAATCAATCAGTACGAGAAT
GGCAAGGCTATTCCAAACGGACAGATTATTGTCAAGATTGAAAGGGCTCT
GGGGACGAAACTCCCGCGTCCTGTGAAGAAGTAG
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protein sequence of Ggra9258.t1

>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=128bp
MSQQDWEKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNARRGDSNMAKL
DAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYEN
GKAIPNGQIIVKIERALGTKLPRPVKK*
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mRNA from alignment at tig00000075_pilon:611518..612250-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=733bp|location=Sequence derived from alignment at tig00000075_pilon:611518..612250- (Gracilaria gracilis GNS1m male)
ATGTCTCAGCAAGATTGGGAAAAGGGTATGACTCACCACTCACCCCCAGC
CCTTCTCCATAAACAAGCTTACTAACGTTCATTCCATTTCCGACAGTCGT
GATTCGTCCGAAGGCTTCCTCCTCCAAGAAGCCAGAAGCTGGAGCTGGCG
GCGCTCCAACGGAGAAAAAGTGTAAGTTTACGACATCCTGAACTGAACAT
TTTGTATTGGGACCTACGTGCCGCAGCTCTTGACTGACGACAACCCGTCT
CTTAACACGTCTTATTTTGCGACAGTTGCCGCCGGTTCAAACGCAAGGCG
AGGTGACTCTAACATGGCCAAACTGGATGCGGAAACCGAGAACCTTTCAC
GTACGTAGCCCATTTTCACGCTCACAGTTGGCTCCTGACACTGCTGTTTT
GACAAGCTATCTAACTGTTTTGTTATCGTGCGCCGTATAGACAAGAGAGT
CGGTCTCACACTAGGGAAGGCCATTCAAAAGGCTCGCACGACGAAGAAAA
TGACGCAAGCCGACCTGGCCAAAATCATAAACGAGAAACCGGCCGTAATC
AATCAGTACGAGAATGGCAAGGCTATTCCAAACGGACAGGTACGTTGTTC
TTTATCGCATGTAAAACACCTTCGCTGCGTTTGTGGAAGCTAACAATCTT
GTCGCTTACGTTCTTTCGCATAGATTATTGTCAAGATTGAAAGGGCTCTG
GGGACGAAACTCCCGCGTCCTGTGAAGAAGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:611518..612250-

>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00000075_pilon:611518..612250- (Gracilaria gracilis GNS1m male)
ATGTCTCAGCAAGATTGGGAAAAGGTCGTGATTCGTCCGAAGGCTTCCTC
CTCCAAGAAGCCAGAAGCTGGAGCTGGCGGCGCTCCAACGGAGAAAAAGT
TTGCCGCCGGTTCAAACGCAAGGCGAGGTGACTCTAACATGGCCAAACTG
GATGCGGAAACCGAGAACCTTTCACACAAGAGAGTCGGTCTCACACTAGG
GAAGGCCATTCAAAAGGCTCGCACGACGAAGAAAATGACGCAAGCCGACC
TGGCCAAAATCATAAACGAGAAACCGGCCGTAATCAATCAGTACGAGAAT
GGCAAGGCTATTCCAAACGGACAGATTATTGTCAAGATTGAAAGGGCTCT
GGGGACGAAACTCCCGCGTCCTGTGAAGAAGTAG
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