Ggra9256.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9256.t1
Unique NameGgra9256.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:607799..608758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709304.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue1.73e-90
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9256Ggra9256Gracilaria gracilis GNS1m malegenetig00000075_pilon 607799..608758 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9256.t1.stop1Ggra9256.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 607799..607801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9256.t1.CDS1Ggra9256.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 607799..608758 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9256.t1.exon1Ggra9256.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 607799..608758 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9256.t1.start1Ggra9256.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 608756..608758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9256.t1Ggra9256.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 607799..608758 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9256.t1 ID=Ggra9256.t1|Name=Ggra9256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MVVSPPRLCPRRSHQMLVASAVTEGSQAVTPTETFRIALGAGAVAGFTVD
AVLFPLDTLKTRLQLSSSVAPKSPAALLTGLYAGFGPAVVASAPAAAAFF
GVYDYVKHVLEDFVGNNKQHYAPVCHMVAAAAGDVAGSTVRAPFEVVKQR
VQSGLYAGAGAAIRGTIAKEGLGGFYTGYGSLVIRELPFDAIQFPLYEYL
KTVAKKRKMGQALETWETSVCGSVAGAISAALTTPLDVVKTRLMTQNVAA
PKYNGIVHGISTIAREEGAGALMAGVVPRVMWISIGGAVFFGAYEAAKKA
LTPVIVRQSRQNGNKPKLS*
back to top

spliced messenger RNA

>Ggra9256.t1 ID=Ggra9256.t1|Name=Ggra9256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000075_pilon:607799..608758- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTATCGCCGCCACGACTATGTCCCAGGCGATCTCATCAAATGCT
GGTAGCCAGCGCCGTAACAGAAGGTAGTCAAGCAGTGACGCCAACCGAAA
CATTTCGAATCGCTCTTGGCGCAGGTGCTGTGGCAGGCTTCACGGTGGAT
GCGGTTCTGTTCCCTTTAGACACCTTAAAAACCAGGTTACAATTATCATC
CAGCGTGGCTCCAAAGTCGCCCGCAGCATTACTAACCGGTTTATACGCAG
GATTTGGGCCGGCTGTTGTAGCATCGGCCCCAGCGGCAGCGGCGTTCTTC
GGAGTTTATGACTATGTCAAACACGTTTTGGAAGACTTTGTTGGGAACAA
CAAACAGCACTACGCGCCTGTCTGCCATATGGTTGCAGCGGCGGCGGGGG
ATGTGGCTGGCTCCACTGTGAGAGCGCCGTTCGAAGTGGTGAAACAACGG
GTACAATCAGGATTGTATGCGGGCGCTGGAGCTGCGATACGTGGTACGAT
AGCAAAAGAAGGACTTGGAGGTTTTTATACTGGCTACGGAAGTCTAGTCA
TTCGTGAGCTACCGTTCGATGCCATTCAGTTCCCGTTATATGAGTACCTT
AAAACCGTTGCGAAGAAGCGAAAGATGGGACAAGCATTAGAGACGTGGGA
GACTTCTGTATGTGGGTCAGTAGCCGGTGCGATCTCAGCAGCTCTGACAA
CCCCGTTGGACGTTGTGAAGACGCGATTAATGACGCAGAATGTAGCGGCT
CCAAAGTACAATGGAATCGTGCATGGAATCAGTACGATTGCTAGGGAAGA
AGGTGCTGGTGCGCTGATGGCCGGAGTGGTTCCCAGAGTTATGTGGATTT
CAATCGGTGGCGCGGTGTTCTTCGGAGCGTATGAAGCGGCGAAGAAAGCT
CTGACGCCTGTGATTGTGAGGCAGTCCAGACAGAACGGGAACAAGCCTAA
GCTGAGTTGA
back to top

protein sequence of Ggra9256.t1

>Ggra9256.t1 ID=Ggra9256.t1|Name=Ggra9256.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MVVSPPRLCPRRSHQMLVASAVTEGSQAVTPTETFRIALGAGAVAGFTVD
AVLFPLDTLKTRLQLSSSVAPKSPAALLTGLYAGFGPAVVASAPAAAAFF
GVYDYVKHVLEDFVGNNKQHYAPVCHMVAAAAGDVAGSTVRAPFEVVKQR
VQSGLYAGAGAAIRGTIAKEGLGGFYTGYGSLVIRELPFDAIQFPLYEYL
KTVAKKRKMGQALETWETSVCGSVAGAISAALTTPLDVVKTRLMTQNVAA
PKYNGIVHGISTIAREEGAGALMAGVVPRVMWISIGGAVFFGAYEAAKKA
LTPVIVRQSRQNGNKPKLS*
back to top

mRNA from alignment at tig00000075_pilon:607799..608758-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9256.t1 ID=Ggra9256.t1|Name=Ggra9256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000075_pilon:607799..608758- (Gracilaria gracilis GNS1m male)
ATGGTTGTATCGCCGCCACGACTATGTCCCAGGCGATCTCATCAAATGCT
GGTAGCCAGCGCCGTAACAGAAGGTAGTCAAGCAGTGACGCCAACCGAAA
CATTTCGAATCGCTCTTGGCGCAGGTGCTGTGGCAGGCTTCACGGTGGAT
GCGGTTCTGTTCCCTTTAGACACCTTAAAAACCAGGTTACAATTATCATC
CAGCGTGGCTCCAAAGTCGCCCGCAGCATTACTAACCGGTTTATACGCAG
GATTTGGGCCGGCTGTTGTAGCATCGGCCCCAGCGGCAGCGGCGTTCTTC
GGAGTTTATGACTATGTCAAACACGTTTTGGAAGACTTTGTTGGGAACAA
CAAACAGCACTACGCGCCTGTCTGCCATATGGTTGCAGCGGCGGCGGGGG
ATGTGGCTGGCTCCACTGTGAGAGCGCCGTTCGAAGTGGTGAAACAACGG
GTACAATCAGGATTGTATGCGGGCGCTGGAGCTGCGATACGTGGTACGAT
AGCAAAAGAAGGACTTGGAGGTTTTTATACTGGCTACGGAAGTCTAGTCA
TTCGTGAGCTACCGTTCGATGCCATTCAGTTCCCGTTATATGAGTACCTT
AAAACCGTTGCGAAGAAGCGAAAGATGGGACAAGCATTAGAGACGTGGGA
GACTTCTGTATGTGGGTCAGTAGCCGGTGCGATCTCAGCAGCTCTGACAA
CCCCGTTGGACGTTGTGAAGACGCGATTAATGACGCAGAATGTAGCGGCT
CCAAAGTACAATGGAATCGTGCATGGAATCAGTACGATTGCTAGGGAAGA
AGGTGCTGGTGCGCTGATGGCCGGAGTGGTTCCCAGAGTTATGTGGATTT
CAATCGGTGGCGCGGTGTTCTTCGGAGCGTATGAAGCGGCGAAGAAAGCT
CTGACGCCTGTGATTGTGAGGCAGTCCAGACAGAACGGGAACAAGCCTAA
GCTGAGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:607799..608758-

>Ggra9256.t1 ID=Ggra9256.t1|Name=Ggra9256.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000075_pilon:607799..608758- (Gracilaria gracilis GNS1m male)
ATGGTTGTATCGCCGCCACGACTATGTCCCAGGCGATCTCATCAAATGCT
GGTAGCCAGCGCCGTAACAGAAGGTAGTCAAGCAGTGACGCCAACCGAAA
CATTTCGAATCGCTCTTGGCGCAGGTGCTGTGGCAGGCTTCACGGTGGAT
GCGGTTCTGTTCCCTTTAGACACCTTAAAAACCAGGTTACAATTATCATC
CAGCGTGGCTCCAAAGTCGCCCGCAGCATTACTAACCGGTTTATACGCAG
GATTTGGGCCGGCTGTTGTAGCATCGGCCCCAGCGGCAGCGGCGTTCTTC
GGAGTTTATGACTATGTCAAACACGTTTTGGAAGACTTTGTTGGGAACAA
CAAACAGCACTACGCGCCTGTCTGCCATATGGTTGCAGCGGCGGCGGGGG
ATGTGGCTGGCTCCACTGTGAGAGCGCCGTTCGAAGTGGTGAAACAACGG
GTACAATCAGGATTGTATGCGGGCGCTGGAGCTGCGATACGTGGTACGAT
AGCAAAAGAAGGACTTGGAGGTTTTTATACTGGCTACGGAAGTCTAGTCA
TTCGTGAGCTACCGTTCGATGCCATTCAGTTCCCGTTATATGAGTACCTT
AAAACCGTTGCGAAGAAGCGAAAGATGGGACAAGCATTAGAGACGTGGGA
GACTTCTGTATGTGGGTCAGTAGCCGGTGCGATCTCAGCAGCTCTGACAA
CCCCGTTGGACGTTGTGAAGACGCGATTAATGACGCAGAATGTAGCGGCT
CCAAAGTACAATGGAATCGTGCATGGAATCAGTACGATTGCTAGGGAAGA
AGGTGCTGGTGCGCTGATGGCCGGAGTGGTTCCCAGAGTTATGTGGATTT
CAATCGGTGGCGCGGTGTTCTTCGGAGCGTATGAAGCGGCGAAGAAAGCT
CTGACGCCTGTGATTGTGAGGCAGTCCAGACAGAACGGGAACAAGCCTAA
GCTGAGTTGA
back to top