Ggra9255.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9255.t1
Unique NameGgra9255.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:606662..607003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10024978
PFAMsDNA_pol_delta_4
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K03505
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
GOsGO:0000228,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue2.2e-11
EggNOG OGs2E5FT@1|root,2SC9I@2759|Eukaryota,37W29@33090|Viridiplantae,3GJJR@35493|Streptophyta
DescriptionDNA polymerase delta subunit
COG categoryS
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9255Ggra9255Gracilaria gracilis GNS1m malegenetig00000075_pilon 606662..607003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1.stop1Ggra9255.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 606662..606664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1.CDS1Ggra9255.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 606662..607003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1.exon1Ggra9255.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 606662..607003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1.start1Ggra9255.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 607001..607003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1Ggra9255.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 606662..607003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=114bp
MDDFVRVEKPIAPSLRTAPKKKDEAEPIPSVIEWRFVTSERADDLSVDSL
SKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDT
GNTVSYRKGGRLW*
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spliced messenger RNA

>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000075_pilon:606662..607003- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACTTTGTGCGTGTTGAAAAGCCTATTGCGCCGTCGTTGAGGAC
CGCCCCGAAGAAGAAGGATGAAGCGGAACCGATTCCAAGCGTCATTGAGT
GGCGCTTTGTCACGTCTGAACGCGCCGACGACCTGAGCGTCGACTCTTTG
TCAAAGCAGCAAATGGAGCAAGTGCTGCGCCTATTCGATTTGAATCCGAG
TTACGGGCCGTTCGTGGGCATGGATCGCCAGTTGCGATGGCAGCGCGCTG
AGAACGTCGGTCTTCATCCGCCGCTGTTGGTCAAGAGGATCCTGGACACT
GGCAACACCGTCTCGTACAGAAAGGGCGGAAGATTGTGGTGA
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protein sequence of Ggra9255.t1

>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MDDFVRVEKPIAPSLRTAPKKKDEAEPIPSVIEWRFVTSERADDLSVDSL
SKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDT
GNTVSYRKGGRLW*
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mRNA from alignment at tig00000075_pilon:606662..607003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp|location=Sequence derived from alignment at tig00000075_pilon:606662..607003- (Gracilaria gracilis GNS1m male)
ATGGATGACTTTGTGCGTGTTGAAAAGCCTATTGCGCCGTCGTTGAGGAC
CGCCCCGAAGAAGAAGGATGAAGCGGAACCGATTCCAAGCGTCATTGAGT
GGCGCTTTGTCACGTCTGAACGCGCCGACGACCTGAGCGTCGACTCTTTG
TCAAAGCAGCAAATGGAGCAAGTGCTGCGCCTATTCGATTTGAATCCGAG
TTACGGGCCGTTCGTGGGCATGGATCGCCAGTTGCGATGGCAGCGCGCTG
AGAACGTCGGTCTTCATCCGCCGCTGTTGGTCAAGAGGATCCTGGACACT
GGCAACACCGTCTCGTACAGAAAGGGCGGAAGATTGTGGTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:606662..607003-

>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=342bp|location=Sequence derived from alignment at tig00000075_pilon:606662..607003- (Gracilaria gracilis GNS1m male)
ATGGATGACTTTGTGCGTGTTGAAAAGCCTATTGCGCCGTCGTTGAGGAC
CGCCCCGAAGAAGAAGGATGAAGCGGAACCGATTCCAAGCGTCATTGAGT
GGCGCTTTGTCACGTCTGAACGCGCCGACGACCTGAGCGTCGACTCTTTG
TCAAAGCAGCAAATGGAGCAAGTGCTGCGCCTATTCGATTTGAATCCGAG
TTACGGGCCGTTCGTGGGCATGGATCGCCAGTTGCGATGGCAGCGCGCTG
AGAACGTCGGTCTTCATCCGCCGCTGTTGGTCAAGAGGATCCTGGACACT
GGCAACACCGTCTCGTACAGAAAGGGCGGAAGATTGTGGTGA
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