Ggra9253.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9253.t1
Unique NameGgra9253.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:602246..602707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002610336.1
Preferred nameH2AFZ
PFAMsHistone,Histone_H2A_C
Max annot lvl33208|Metazoa
KEGG koko:K11251,ko:K21799
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000790,GO:0000791,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000980,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0005701,GO:0005719,GO:0005720,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010369,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0019827,GO:0030718,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031490,GO:0031491,GO:0031492,GO:0031974,GO:0031981,GO:0032355,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0032993,GO:0033036,GO:0033365,GO:0033993,GO:0034502,GO:0034613,GO:0035019,GO:0035326,GO:0035861,GO:0036098,GO:0040029,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071168,GO:0071310,GO:0071375,GO:0071392,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071840,GO:0080090,GO:0090734,GO:0097159,GO:0098687,GO:0098727,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Evalue7.26e-59
EggNOG OGsCOG5262@1|root,KOG1757@2759|Eukaryota,39ZW3@33154|Opisthokonta,3BPC4@33208|Metazoa,3D68R@33213|Bilateria,48E2D@7711|Chordata
Descriptionchromatin silencing
COG categoryB
BRITEko00000,ko00001,ko03019,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9253Ggra9253Gracilaria gracilis GNS1m malegenetig00000075_pilon 602246..602707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9253.t1.stop1Ggra9253.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 602246..602248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9253.t1.CDS1Ggra9253.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 602246..602707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9253.t1.exon1Ggra9253.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 602246..602707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9253.t1.start1Ggra9253.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 602705..602707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9253.t1Ggra9253.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 602246..602707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MAPKKSAPADDKDKDTKDTKSTTNGTHAKTSSSTEPKKVISRSSRAGLQF
PVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLK
VKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS
QME*
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spliced messenger RNA

>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:602246..602707- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAGAAGTCAGCCCCAGCCGACGACAAGGACAAGGACACCAA
GGACACCAAGTCAACCACAAACGGCACGCACGCCAAGACTTCCTCATCTA
CCGAACCAAAGAAAGTCATTTCTCGTTCGTCGCGCGCCGGCCTACAGTTC
CCGGTCGGTCGTATTCATCGCCACCTCAAGAACCGCGTCAGCCGTCAAGA
GCGGGTAGGAGCTACTGCCGCAGTCTACTCTGCTGCCATACTCGAGTATC
TCACCGCAGAGGTTCTGGAGCTTGCCGGAAACGCTTGCAAGGATCTCAAG
GTCAAACGAGTCACTCCTAGACATTTGCAACTTGCCATTCGCGGTGACGA
GGAGCTTGACTGCCTTGTTCAGGCAACCATCGCTGGAGGAGGCGTCATTC
CATATATTCACAAGAGCCTTACCTTCAAGAAAGGTTCCAAGAAAAGCTCA
CAAATGGAATAA
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protein sequence of Ggra9253.t1

>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MAPKKSAPADDKDKDTKDTKSTTNGTHAKTSSSTEPKKVISRSSRAGLQF
PVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLK
VKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS
QME*
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mRNA from alignment at tig00000075_pilon:602246..602707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:602246..602707- (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAGAAGTCAGCCCCAGCCGACGACAAGGACAAGGACACCAA
GGACACCAAGTCAACCACAAACGGCACGCACGCCAAGACTTCCTCATCTA
CCGAACCAAAGAAAGTCATTTCTCGTTCGTCGCGCGCCGGCCTACAGTTC
CCGGTCGGTCGTATTCATCGCCACCTCAAGAACCGCGTCAGCCGTCAAGA
GCGGGTAGGAGCTACTGCCGCAGTCTACTCTGCTGCCATACTCGAGTATC
TCACCGCAGAGGTTCTGGAGCTTGCCGGAAACGCTTGCAAGGATCTCAAG
GTCAAACGAGTCACTCCTAGACATTTGCAACTTGCCATTCGCGGTGACGA
GGAGCTTGACTGCCTTGTTCAGGCAACCATCGCTGGAGGAGGCGTCATTC
CATATATTCACAAGAGCCTTACCTTCAAGAAAGGTTCCAAGAAAAGCTCA
CAAATGGAATAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:602246..602707-

>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000075_pilon:602246..602707- (Gracilaria gracilis GNS1m male)
ATGGCTCCCAAGAAGTCAGCCCCAGCCGACGACAAGGACAAGGACACCAA
GGACACCAAGTCAACCACAAACGGCACGCACGCCAAGACTTCCTCATCTA
CCGAACCAAAGAAAGTCATTTCTCGTTCGTCGCGCGCCGGCCTACAGTTC
CCGGTCGGTCGTATTCATCGCCACCTCAAGAACCGCGTCAGCCGTCAAGA
GCGGGTAGGAGCTACTGCCGCAGTCTACTCTGCTGCCATACTCGAGTATC
TCACCGCAGAGGTTCTGGAGCTTGCCGGAAACGCTTGCAAGGATCTCAAG
GTCAAACGAGTCACTCCTAGACATTTGCAACTTGCCATTCGCGGTGACGA
GGAGCTTGACTGCCTTGTTCAGGCAACCATCGCTGGAGGAGGCGTCATTC
CATATATTCACAAGAGCCTTACCTTCAAGAAAGGTTCCAAGAAAAGCTCA
CAAATGGAATAA
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