Ggra9252.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9252.t1
Unique NameGgra9252.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:601271..602227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9252Ggra9252Gracilaria gracilis GNS1m malegenetig00000075_pilon 601271..602227 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9252.t1.start1Ggra9252.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 601271..601273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9252.t1.CDS1Ggra9252.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 601271..602227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9252.t1.exon1Ggra9252.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 601271..602227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9252.t1.stop1Ggra9252.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 602225..602227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9252.t1Ggra9252.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 601271..602227 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9252.t1 ID=Ggra9252.t1|Name=Ggra9252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=319bp
MPSTQGLPIDTFLKTVPWLSHSHCSPQSAQHGTNSCNACTSVSANCCGVD
ADANQGFITGVARFYTSAHQLVFFAPVSNETDALSDISAVIGVEQGKIRL
VLRTSGSTGNVCMTIDEAHIIEAVKTSVEQTVHMIHFTFPFVILEVQSRA
TVLADSCDARTASARELKRFDSLKEEVNKVREGNMEKKARTPEEDAQQSS
SASAPLSEQKPSLENKEGLGLEDVFMNVISKGAHLVMPPCYPYAAGNEVS
DGAWNSSEKHIAFAEACMQQESAIRDALKQVDAWVHFARRKRRSVEQSPT
KNGAKTQRTSELLNMEGK*
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spliced messenger RNA

>Ggra9252.t1 ID=Ggra9252.t1|Name=Ggra9252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000075_pilon:601271..602227+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCCACTCAAGGACTGCCCATCGACACGTTCTTGAAAACTGTACC
ATGGCTCTCCCATTCTCACTGTTCGCCGCAATCTGCACAACATGGGACGA
ATAGTTGCAATGCTTGTACGAGCGTCAGCGCTAACTGTTGTGGCGTTGAT
GCAGATGCTAATCAGGGATTCATCACTGGGGTGGCTCGCTTCTACACCTC
GGCCCATCAACTGGTTTTTTTCGCGCCAGTATCGAATGAGACGGATGCTC
TTTCCGATATTTCGGCCGTGATTGGTGTGGAACAAGGTAAGATTCGGCTC
GTGTTACGTACGAGTGGGTCGACTGGTAATGTGTGTATGACCATTGATGA
AGCTCATATCATCGAAGCGGTGAAGACAAGTGTGGAACAAACCGTGCATA
TGATTCACTTTACGTTCCCTTTCGTGATTTTGGAGGTTCAAAGTCGAGCG
ACTGTTTTGGCTGATAGTTGTGATGCACGCACAGCAAGTGCGCGTGAACT
GAAGAGGTTTGACAGCCTGAAAGAGGAGGTGAACAAGGTACGAGAGGGAA
ACATGGAGAAGAAAGCAAGAACGCCAGAAGAAGATGCGCAACAGAGCTCA
TCGGCATCAGCACCGCTTTCAGAGCAAAAGCCAAGCTTGGAAAACAAGGA
AGGACTTGGATTGGAAGATGTGTTTATGAACGTGATATCGAAAGGAGCGC
ATTTGGTGATGCCGCCGTGCTATCCATACGCTGCAGGTAACGAAGTGAGT
GATGGAGCGTGGAACAGTAGTGAGAAGCACATTGCATTTGCTGAAGCGTG
CATGCAGCAGGAATCGGCGATTCGCGACGCTCTGAAGCAGGTGGATGCAT
GGGTTCACTTTGCAAGACGAAAACGAAGATCTGTGGAACAGAGCCCAACC
AAGAATGGGGCAAAGACGCAGAGAACAAGCGAGCTTCTCAACATGGAGGG
CAAATGA
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protein sequence of Ggra9252.t1

>Ggra9252.t1 ID=Ggra9252.t1|Name=Ggra9252.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MPSTQGLPIDTFLKTVPWLSHSHCSPQSAQHGTNSCNACTSVSANCCGVD
ADANQGFITGVARFYTSAHQLVFFAPVSNETDALSDISAVIGVEQGKIRL
VLRTSGSTGNVCMTIDEAHIIEAVKTSVEQTVHMIHFTFPFVILEVQSRA
TVLADSCDARTASARELKRFDSLKEEVNKVREGNMEKKARTPEEDAQQSS
SASAPLSEQKPSLENKEGLGLEDVFMNVISKGAHLVMPPCYPYAAGNEVS
DGAWNSSEKHIAFAEACMQQESAIRDALKQVDAWVHFARRKRRSVEQSPT
KNGAKTQRTSELLNMEGK*
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mRNA from alignment at tig00000075_pilon:601271..602227+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9252.t1 ID=Ggra9252.t1|Name=Ggra9252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000075_pilon:601271..602227+ (Gracilaria gracilis GNS1m male)
ATGCCATCCACTCAAGGACTGCCCATCGACACGTTCTTGAAAACTGTACC
ATGGCTCTCCCATTCTCACTGTTCGCCGCAATCTGCACAACATGGGACGA
ATAGTTGCAATGCTTGTACGAGCGTCAGCGCTAACTGTTGTGGCGTTGAT
GCAGATGCTAATCAGGGATTCATCACTGGGGTGGCTCGCTTCTACACCTC
GGCCCATCAACTGGTTTTTTTCGCGCCAGTATCGAATGAGACGGATGCTC
TTTCCGATATTTCGGCCGTGATTGGTGTGGAACAAGGTAAGATTCGGCTC
GTGTTACGTACGAGTGGGTCGACTGGTAATGTGTGTATGACCATTGATGA
AGCTCATATCATCGAAGCGGTGAAGACAAGTGTGGAACAAACCGTGCATA
TGATTCACTTTACGTTCCCTTTCGTGATTTTGGAGGTTCAAAGTCGAGCG
ACTGTTTTGGCTGATAGTTGTGATGCACGCACAGCAAGTGCGCGTGAACT
GAAGAGGTTTGACAGCCTGAAAGAGGAGGTGAACAAGGTACGAGAGGGAA
ACATGGAGAAGAAAGCAAGAACGCCAGAAGAAGATGCGCAACAGAGCTCA
TCGGCATCAGCACCGCTTTCAGAGCAAAAGCCAAGCTTGGAAAACAAGGA
AGGACTTGGATTGGAAGATGTGTTTATGAACGTGATATCGAAAGGAGCGC
ATTTGGTGATGCCGCCGTGCTATCCATACGCTGCAGGTAACGAAGTGAGT
GATGGAGCGTGGAACAGTAGTGAGAAGCACATTGCATTTGCTGAAGCGTG
CATGCAGCAGGAATCGGCGATTCGCGACGCTCTGAAGCAGGTGGATGCAT
GGGTTCACTTTGCAAGACGAAAACGAAGATCTGTGGAACAGAGCCCAACC
AAGAATGGGGCAAAGACGCAGAGAACAAGCGAGCTTCTCAACATGGAGGG
CAAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:601271..602227+

>Ggra9252.t1 ID=Ggra9252.t1|Name=Ggra9252.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000075_pilon:601271..602227+ (Gracilaria gracilis GNS1m male)
ATGCCATCCACTCAAGGACTGCCCATCGACACGTTCTTGAAAACTGTACC
ATGGCTCTCCCATTCTCACTGTTCGCCGCAATCTGCACAACATGGGACGA
ATAGTTGCAATGCTTGTACGAGCGTCAGCGCTAACTGTTGTGGCGTTGAT
GCAGATGCTAATCAGGGATTCATCACTGGGGTGGCTCGCTTCTACACCTC
GGCCCATCAACTGGTTTTTTTCGCGCCAGTATCGAATGAGACGGATGCTC
TTTCCGATATTTCGGCCGTGATTGGTGTGGAACAAGGTAAGATTCGGCTC
GTGTTACGTACGAGTGGGTCGACTGGTAATGTGTGTATGACCATTGATGA
AGCTCATATCATCGAAGCGGTGAAGACAAGTGTGGAACAAACCGTGCATA
TGATTCACTTTACGTTCCCTTTCGTGATTTTGGAGGTTCAAAGTCGAGCG
ACTGTTTTGGCTGATAGTTGTGATGCACGCACAGCAAGTGCGCGTGAACT
GAAGAGGTTTGACAGCCTGAAAGAGGAGGTGAACAAGGTACGAGAGGGAA
ACATGGAGAAGAAAGCAAGAACGCCAGAAGAAGATGCGCAACAGAGCTCA
TCGGCATCAGCACCGCTTTCAGAGCAAAAGCCAAGCTTGGAAAACAAGGA
AGGACTTGGATTGGAAGATGTGTTTATGAACGTGATATCGAAAGGAGCGC
ATTTGGTGATGCCGCCGTGCTATCCATACGCTGCAGGTAACGAAGTGAGT
GATGGAGCGTGGAACAGTAGTGAGAAGCACATTGCATTTGCTGAAGCGTG
CATGCAGCAGGAATCGGCGATTCGCGACGCTCTGAAGCAGGTGGATGCAT
GGGTTCACTTTGCAAGACGAAAACGAAGATCTGTGGAACAGAGCCCAACC
AAGAATGGGGCAAAGACGCAGAGAACAAGCGAGCTTCTCAACATGGAGGG
CAAATGA
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