Ggra9247.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9247.t1
Unique NameGgra9247.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:575853..577691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_352.3
PFAMsABC_tran,Fer4,RLI
Max annot lvl35493|Streptophyta
KEGG koko:K06174
GOsGO:0000054,GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005506,GO:0005524,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017076,GO:0019538,GO:0022411,GO:0022613,GO:0030554,GO:0031503,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0033036,GO:0033750,GO:0034613,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043021,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.47e-276
EggNOG OGsCOG1245@1|root,KOG0063@2759|Eukaryota,37NH5@33090|Viridiplantae,3GC1Z@35493|Streptophyta,3HSQZ@3699|Brassicales
DescriptionABC transporter E family member
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9247Ggra9247Gracilaria gracilis GNS1m malegenetig00000075_pilon 575853..577691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1Ggra9247.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 575853..577691 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1.stop1Ggra9247.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 575853..575855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1.CDS1Ggra9247.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 575853..576926 -
Ggra9247.t1.CDS2Ggra9247.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 577215..577691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1.exon1Ggra9247.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 575853..576926 -
Ggra9247.t1.exon2Ggra9247.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 577215..577691 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1.intron1Ggra9247.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 576927..577214 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9247.t1.start1Ggra9247.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 577689..577691 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9247.t1 ID=Ggra9247.t1|Name=Ggra9247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKISV
ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV
PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNSPPDWTDILSHFRG
SELQNYFTKAAKLIRGLLADKSKTYVIVVEHDLAVLDYLSDFVCCLYGKP
GAYGVVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEV
EHHHLYSYPDMSKTLGSFKLNIESGSFTDSEIVVMLGENGTGKTTFIRML
AGRLEPDGKQVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQF
MTDVTKPMNMDPLLDQYVKHLSGGELQRVALVIALGKAADVYLIDEPSAY
LDSEQRIVAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGTPAR
ECTACAPQTLVSGMNRFLKNLEITFRRDPTNFRPRINKLDSVKDREQKLV
GQYFYVDVASDDRDED*
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spliced messenger RNA

>Ggra9247.t1 ID=Ggra9247.t1|Name=Ggra9247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000075_pilon:575853..577691- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGAAGCTCACGCGTATCGCCATCGTCAACGGCGAACGATGCAA
GCCCAAGCGATGCTCTTTGGAGTGTAAGAAGAGTTGCCCGGTCGTGCGCA
TGGGCAAGATAGGATGTATTGAGGTTACGTCCAAGAGCAAGATTTCAGTC
ATTTCAGAGATCCTCTGCGTAGGTTGTGGTATCTGCGTTAAAAAGTGCCC
TTTCGATGCCATTCAGATCATCAATCTGCCCAAGGAACTTGAGAAGGAGA
CAGTCCATCGCTTCGGTCCCAACTCGTTCAAGCTGCATCGTCTCCCTGTC
CCTAGGCCTGGTCAGGTCCTGGGTTTAGTTGGCACTAATGGTATCGGAAA
GAGCACTGCTCTTCGAGTGCTTTCGGGTAAACTCAAGCCCAATCTTGGCG
CATGGAACTCGCCACCAGATTGGACCGATATTCTCAGTCACTTTCGCGGA
AGCGAGCTGCAAAACTACTTCACCAAGGCCGCCAAGCTTATCAGAGGTCT
ACTCGCCGATAAGAGCAAGACTTATGTTATTGTGGTTGAACATGATCTTG
CTGTGCTGGATTATCTCTCTGACTTCGTATGCTGTCTTTACGGCAAGCCT
GGAGCGTACGGCGTCGTTACACTTCCGTTCTCGGTCAGAGAAGGCATTAA
CATATTCTTAGCTGGTTTTGTACCAACAGAAAACCTCAGGTTTAGGGATA
CAGCGCTGCAATTCCGACTGGCTGAAACTGCTGATGATGAGGAAGAAGTT
GAACATCATCACTTATATAGCTACCCGGACATGAGCAAGACACTAGGATC
ATTCAAGTTGAACATTGAATCTGGATCTTTCACAGATTCAGAAATCGTAG
TCATGCTTGGAGAAAATGGAACCGGTAAGACAACATTCATTCGTATGCTT
GCCGGGCGTCTAGAACCTGACGGAAAGCAGGTCGAAGTTCCCGAGATGAA
CGTAAGCTACAAACCTCAGAAGATTTCACCCAAGTTTGATGGTACCGTGC
GCCAGCTTTTGTACGCCAAGATTCGCGACGCCTGGTTACATCCGCAGTTC
ATGACAGATGTGACAAAACCTATGAACATGGACCCACTTCTAGATCAATA
TGTCAAGCATTTGTCAGGAGGAGAGCTTCAACGAGTAGCTCTCGTAATCG
CTCTTGGGAAAGCTGCGGATGTATATCTCATCGATGAGCCGAGCGCTTAT
CTGGATTCTGAACAAAGAATAGTGGCTGCGAAGATGATTAAGAGATTCAT
TTTGCATGCAAAGAAAACAGCTTTCGTGGTAGAACACGATTTCATCATGA
GTTCTTATCTAGCTGACCGTGTGATTGTTTATGAAGGTACACCTGCGAGG
GAGTGTACTGCTTGCGCTCCACAAACTCTAGTGTCGGGGATGAACAGATT
CCTCAAGAACCTGGAAATCACATTCAGACGGGATCCTACTAATTTCCGGC
CGAGAATCAACAAACTAGATTCTGTGAAGGATAGAGAGCAAAAGTTGGTT
GGGCAATATTTCTATGTTGACGTTGCTTCCGATGATCGTGATGAAGACTA
A
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protein sequence of Ggra9247.t1

>Ggra9247.t1 ID=Ggra9247.t1|Name=Ggra9247.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKISV
ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV
PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNSPPDWTDILSHFRG
SELQNYFTKAAKLIRGLLADKSKTYVIVVEHDLAVLDYLSDFVCCLYGKP
GAYGVVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEV
EHHHLYSYPDMSKTLGSFKLNIESGSFTDSEIVVMLGENGTGKTTFIRML
AGRLEPDGKQVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQF
MTDVTKPMNMDPLLDQYVKHLSGGELQRVALVIALGKAADVYLIDEPSAY
LDSEQRIVAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGTPAR
ECTACAPQTLVSGMNRFLKNLEITFRRDPTNFRPRINKLDSVKDREQKLV
GQYFYVDVASDDRDED*
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mRNA from alignment at tig00000075_pilon:575853..577691-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9247.t1 ID=Ggra9247.t1|Name=Ggra9247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000075_pilon:575853..577691- (Gracilaria gracilis GNS1m male)
ATGGCTGAGAAGCTCACGCGTATCGCCATCGTCAACGGCGAACGATGCAA
GCCCAAGCGATGCTCTTTGGAGTGTAAGAAGAGTTGCCCGGTCGTGCGCA
TGGGCAAGATAGGATGTATTGAGGTTACGTCCAAGAGCAAGATTTCAGTC
ATTTCAGAGATCCTCTGCGTAGGTTGTGGTATCTGCGTTAAAAAGTGCCC
TTTCGATGCCATTCAGATCATCAATCTGCCCAAGGAACTTGAGAAGGAGA
CAGTCCATCGCTTCGGTCCCAACTCGTTCAAGCTGCATCGTCTCCCTGTC
CCTAGGCCTGGTCAGGTCCTGGGTTTAGTTGGCACTAATGGTATCGGAAA
GAGCACTGCTCTTCGAGTGCTTTCGGGTAAACTCAAGCCCAATCTTGGCG
CATGGAACTCGCCACCAGATTGGACCGATATTCTCAGTCACTTTCGCGGA
AGCGAGCTGCAAAACTACTTCACCAAGGTACTTGAAGACGACATTAAGGC
TGTGTTCAAACCGCAATACGTCGATGCTATCGCGAAGGCCGTCAAGGGTC
GTGTCATAGACATGCTTAAGAGAAAGGATGAGCGCAATGCAATGGATAGT
ATTGTAGATGATTTGCAGCTGCGCAAACTGCTTGACCGTGAGATCGGTGT
TCTTAGCGGCGGCGAGTTGCAGCGTTTCGCGTTGGCTATGGTCGCTGTGC
AGCAAGCGGAAGTGTATATGATCGACGAACCCAGCTCCTACCTTGATGTA
CGCCAACGACTAAAGGCCGCCAAGCTTATCAGAGGTCTACTCGCCGATAA
GAGCAAGACTTATGTTATTGTGGTTGAACATGATCTTGCTGTGCTGGATT
ATCTCTCTGACTTCGTATGCTGTCTTTACGGCAAGCCTGGAGCGTACGGC
GTCGTTACACTTCCGTTCTCGGTCAGAGAAGGCATTAACATATTCTTAGC
TGGTTTTGTACCAACAGAAAACCTCAGGTTTAGGGATACAGCGCTGCAAT
TCCGACTGGCTGAAACTGCTGATGATGAGGAAGAAGTTGAACATCATCAC
TTATATAGCTACCCGGACATGAGCAAGACACTAGGATCATTCAAGTTGAA
CATTGAATCTGGATCTTTCACAGATTCAGAAATCGTAGTCATGCTTGGAG
AAAATGGAACCGGTAAGACAACATTCATTCGTATGCTTGCCGGGCGTCTA
GAACCTGACGGAAAGCAGGTCGAAGTTCCCGAGATGAACGTAAGCTACAA
ACCTCAGAAGATTTCACCCAAGTTTGATGGTACCGTGCGCCAGCTTTTGT
ACGCCAAGATTCGCGACGCCTGGTTACATCCGCAGTTCATGACAGATGTG
ACAAAACCTATGAACATGGACCCACTTCTAGATCAATATGTCAAGCATTT
GTCAGGAGGAGAGCTTCAACGAGTAGCTCTCGTAATCGCTCTTGGGAAAG
CTGCGGATGTATATCTCATCGATGAGCCGAGCGCTTATCTGGATTCTGAA
CAAAGAATAGTGGCTGCGAAGATGATTAAGAGATTCATTTTGCATGCAAA
GAAAACAGCTTTCGTGGTAGAACACGATTTCATCATGAGTTCTTATCTAG
CTGACCGTGTGATTGTTTATGAAGGTACACCTGCGAGGGAGTGTACTGCT
TGCGCTCCACAAACTCTAGTGTCGGGGATGAACAGATTCCTCAAGAACCT
GGAAATCACATTCAGACGGGATCCTACTAATTTCCGGCCGAGAATCAACA
AACTAGATTCTGTGAAGGATAGAGAGCAAAAGTTGGTTGGGCAATATTTC
TATGTTGACGTTGCTTCCGATGATCGTGATGAAGACTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:575853..577691-

>Ggra9247.t1 ID=Ggra9247.t1|Name=Ggra9247.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000075_pilon:575853..577691- (Gracilaria gracilis GNS1m male)
ATGGCTGAGAAGCTCACGCGTATCGCCATCGTCAACGGCGAACGATGCAA
GCCCAAGCGATGCTCTTTGGAGTGTAAGAAGAGTTGCCCGGTCGTGCGCA
TGGGCAAGATAGGATGTATTGAGGTTACGTCCAAGAGCAAGATTTCAGTC
ATTTCAGAGATCCTCTGCGTAGGTTGTGGTATCTGCGTTAAAAAGTGCCC
TTTCGATGCCATTCAGATCATCAATCTGCCCAAGGAACTTGAGAAGGAGA
CAGTCCATCGCTTCGGTCCCAACTCGTTCAAGCTGCATCGTCTCCCTGTC
CCTAGGCCTGGTCAGGTCCTGGGTTTAGTTGGCACTAATGGTATCGGAAA
GAGCACTGCTCTTCGAGTGCTTTCGGGTAAACTCAAGCCCAATCTTGGCG
CATGGAACTCGCCACCAGATTGGACCGATATTCTCAGTCACTTTCGCGGA
AGCGAGCTGCAAAACTACTTCACCAAGGCCGCCAAGCTTATCAGAGGTCT
ACTCGCCGATAAGAGCAAGACTTATGTTATTGTGGTTGAACATGATCTTG
CTGTGCTGGATTATCTCTCTGACTTCGTATGCTGTCTTTACGGCAAGCCT
GGAGCGTACGGCGTCGTTACACTTCCGTTCTCGGTCAGAGAAGGCATTAA
CATATTCTTAGCTGGTTTTGTACCAACAGAAAACCTCAGGTTTAGGGATA
CAGCGCTGCAATTCCGACTGGCTGAAACTGCTGATGATGAGGAAGAAGTT
GAACATCATCACTTATATAGCTACCCGGACATGAGCAAGACACTAGGATC
ATTCAAGTTGAACATTGAATCTGGATCTTTCACAGATTCAGAAATCGTAG
TCATGCTTGGAGAAAATGGAACCGGTAAGACAACATTCATTCGTATGCTT
GCCGGGCGTCTAGAACCTGACGGAAAGCAGGTCGAAGTTCCCGAGATGAA
CGTAAGCTACAAACCTCAGAAGATTTCACCCAAGTTTGATGGTACCGTGC
GCCAGCTTTTGTACGCCAAGATTCGCGACGCCTGGTTACATCCGCAGTTC
ATGACAGATGTGACAAAACCTATGAACATGGACCCACTTCTAGATCAATA
TGTCAAGCATTTGTCAGGAGGAGAGCTTCAACGAGTAGCTCTCGTAATCG
CTCTTGGGAAAGCTGCGGATGTATATCTCATCGATGAGCCGAGCGCTTAT
CTGGATTCTGAACAAAGAATAGTGGCTGCGAAGATGATTAAGAGATTCAT
TTTGCATGCAAAGAAAACAGCTTTCGTGGTAGAACACGATTTCATCATGA
GTTCTTATCTAGCTGACCGTGTGATTGTTTATGAAGGTACACCTGCGAGG
GAGTGTACTGCTTGCGCTCCACAAACTCTAGTGTCGGGGATGAACAGATT
CCTCAAGAACCTGGAAATCACATTCAGACGGGATCCTACTAATTTCCGGC
CGAGAATCAACAAACTAGATTCTGTGAAGGATAGAGAGCAAAAGTTGGTT
GGGCAATATTTCTATGTTGACGTTGCTTCCGATGATCGTGATGAAGACTA
A
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