Ggra9245.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9245.t1
Unique Name	Ggra9245.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	329

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:570035..571021 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_019210-tr
Preferred name	NGDN
PFAMs	Sas10_Utp3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14765
GOs	GO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	7.69e-17
EggNOG OGs	KOG3117@1\|root,KOG3117@2759\|Eukaryota,38GU4@33154\|Opisthokonta,3BHWF@33208\|Metazoa,3CXS4@33213\|Bilateria
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	A
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9245	Ggra9245	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 570035..571021 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9245.t1.start1	Ggra9245.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 570035..570037 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9245.t1.CDS1	Ggra9245.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 570035..571021 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9245.t1.exon1	Ggra9245.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 570035..571021 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9245.t1.stop1	Ggra9245.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 571019..571021 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9245.t1	Ggra9245.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 570035..571021 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:570035..571021+
coding sequence from alignment at tig00000075_pilon:570035..571021+

mRNA sequence

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MEVVEAINKLQELADDAKDHVQKVKSVTESAEGLENGISLLRAKSATLMH
YNALIIQFALARLLGKPVQPVVERLIEDWVILTKTAPLEKKLQYQIDTLL
RSASQDAANEADRHRPDPDAVVLDEDGEAESSDEERPYRAPRFTEVVYDG
DDENRMERIQKQKERHQARAIRSSEVQEMLATIQGRPEELFSNENLHTPS
AKRVIKEQKQREQFEEDNFVRLSQSKKSKKRTRREMDDAMTGAQGGGNGF
SGLTALADRVVKSTKGNSSVNGKAGAANRSKRHGVDEEEEIQRERQLDQI
VEDEEREIRLSNKRSSRSRGSARKKRRR*

spliced messenger RNA

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA

protein sequence of Ggra9245.t1

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MEVVEAINKLQELADDAKDHVQKVKSVTESAEGLENGISLLRAKSATLMH
YNALIIQFALARLLGKPVQPVVERLIEDWVILTKTAPLEKKLQYQIDTLL
RSASQDAANEADRHRPDPDAVVLDEDGEAESSDEERPYRAPRFTEVVYDG
DDENRMERIQKQKERHQARAIRSSEVQEMLATIQGRPEELFSNENLHTPS
AKRVIKEQKQREQFEEDNFVRLSQSKKSKKRTRREMDDAMTGAQGGGNGF
SGLTALADRVVKSTKGNSSVNGKAGAANRSKRHGVDEEEEIQRERQLDQI
VEDEEREIRLSNKRSSRSRGSARKKRRR*

mRNA from alignment at tig00000075_pilon:570035..571021+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA

Coding sequence (CDS) from alignment at tig00000075_pilon:570035..571021+

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA