Ggra9244.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9244.t1
Unique NameGgra9244.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:568182..568957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004346793.1
Preferred nameFIS1
PFAMsFis1_TPR_C,Fis1_TPR_N
Max annot lvl33154|Opisthokonta
KEGG koko:K17969
KEGG Pathwayko04137,ko04139,map04137,map04139
GOsGO:0000266,GO:0000422,GO:0001101,GO:0001300,GO:0001666,GO:0001678,GO:0001836,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005779,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007154,GO:0007165,GO:0007204,GO:0007568,GO:0007569,GO:0008053,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0014823,GO:0014850,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016559,GO:0019222,GO:0019722,GO:0019725,GO:0019867,GO:0019932,GO:0022411,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030162,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031667,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032469,GO:0032471,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033500,GO:0033993,GO:0034284,GO:0034613,GO:0035556,GO:0035584,GO:0036293,GO:0042221,GO:0042579,GO:0042592,GO:0042593,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043653,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045184,GO:0045862,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051480,GO:0051560,GO:0051561,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060341,GO:0061024,GO:0061025,GO:0061726,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070482,GO:0070584,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0072594,GO:0072655,GO:0080090,GO:0090087,GO:0090140,GO:0090141,GO:0090313,GO:0090314,GO:0090316,GO:0097190,GO:0097237,GO:0098573,GO:0098588,GO:0098771,GO:0098805,GO:1901214,GO:1901216,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1902617,GO:1903008,GO:1903533,GO:1903827,GO:1903829,GO:1904578,GO:1904579,GO:1904951,GO:1905395,GO:1905475,GO:1905477,GO:1990910,GO:2000116,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue3.93e-20
EggNOG OGsKOG3364@1|root,KOG3364@2759|Eukaryota,3A3F6@33154|Opisthokonta
Descriptionmitochondrial fission
COG categoryM
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9244Ggra9244Gracilaria gracilis GNS1m malegenetig00000075_pilon 568182..568957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1Ggra9244.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 568182..568957 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1.start1Ggra9244.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 568182..568184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1.CDS1Ggra9244.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 568182..568388 +
Ggra9244.t1.CDS2Ggra9244.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 568468..568563 +
Ggra9244.t1.CDS3Ggra9244.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 568658..568957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1.exon1Ggra9244.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 568182..568388 +
Ggra9244.t1.exon2Ggra9244.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 568468..568563 +
Ggra9244.t1.exon3Ggra9244.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 568658..568957 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1.intron1Ggra9244.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 568389..568467 +
Ggra9244.t1.intron2Ggra9244.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 568564..568657 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9244.t1.stop1Ggra9244.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 568955..568957 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9244.t1 ID=Ggra9244.t1|Name=Ggra9244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MSARPTPPPPPTVGGSAPPPPPTAAAPSAHQHAQQLPPVQTPIPQSSTAV
RRTELDDDLAEVDLSAELDRFEEIYMKECMKSRPNPTAKFNYAWALIRSK
ERANIKKGVIMMQGLLEDRYADRDCLYYMALGYYRLDDVVSSRKCLDKLL
KIAPNCRQAISLMDIVEDKITRDGVIGISIVSGIAVVGGLLAAAFAGGRR
*
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spliced messenger RNA

>Ggra9244.t1 ID=Ggra9244.t1|Name=Ggra9244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000075_pilon:568182..568957+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAAGACCTACGCCTCCTCCACCACCAACCGTGGGGGGCAGTGC
TCCTCCGCCACCACCGACTGCCGCTGCTCCTTCCGCACACCAACATGCGC
AGCAATTGCCTCCGGTGCAAACGCCCATCCCTCAATCTAGCACTGCCGTC
AGACGAACAGAACTAGACGATGACCTAGCGGAGGTAGATCTCAGTGCCGA
ACTTGATCGCTTTGAAGAGATTTACATGAAGGAATGTATGAAATCGCGTC
CAAATCCTACAGCGAAGTTCAACTACGCGTGGGCGCTTATCCGATCAAAA
GAGCGAGCAAATATAAAGAAGGGCGTCATAATGATGCAAGGTTTGTTAGA
AGATCGATATGCAGATCGGGACTGCTTGTACTATATGGCTCTCGGTTACT
ACAGGCTTGACGATGTCGTGTCAAGCAGGAAATGTTTGGACAAGCTGCTC
AAGATTGCTCCAAATTGCCGGCAAGCTATTTCCCTAATGGACATTGTGGA
GGATAAAATTACTAGGGATGGAGTCATCGGAATATCAATTGTCTCGGGTA
TTGCGGTTGTTGGTGGACTTCTAGCTGCTGCGTTTGCAGGTGGCAGACGA
TAA
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protein sequence of Ggra9244.t1

>Ggra9244.t1 ID=Ggra9244.t1|Name=Ggra9244.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MSARPTPPPPPTVGGSAPPPPPTAAAPSAHQHAQQLPPVQTPIPQSSTAV
RRTELDDDLAEVDLSAELDRFEEIYMKECMKSRPNPTAKFNYAWALIRSK
ERANIKKGVIMMQGLLEDRYADRDCLYYMALGYYRLDDVVSSRKCLDKLL
KIAPNCRQAISLMDIVEDKITRDGVIGISIVSGIAVVGGLLAAAFAGGRR
*
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mRNA from alignment at tig00000075_pilon:568182..568957+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9244.t1 ID=Ggra9244.t1|Name=Ggra9244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=776bp|location=Sequence derived from alignment at tig00000075_pilon:568182..568957+ (Gracilaria gracilis GNS1m male)
ATGTCTGCAAGACCTACGCCTCCTCCACCACCAACCGTGGGGGGCAGTGC
TCCTCCGCCACCACCGACTGCCGCTGCTCCTTCCGCACACCAACATGCGC
AGCAATTGCCTCCGGTGCAAACGCCCATCCCTCAATCTAGCACTGCCGTC
AGACGAACAGAACTAGACGATGACCTAGCGGAGGTAGATCTCAGTGCCGA
ACTTGATGTAAGTGCAGTCCATTTTCGAATCTTGTTCTCTGCGAGCATCG
TACAACTAACGCAAGCGTAATGTTGCCTCTCCGTAGCGCTTTGAAGAGAT
TTACATGAAGGAATGTATGAAATCGCGTCCAAATCCTACAGCGAAGTTCA
ACTACGCGTGGGCGCTTATCCGATCAAAAGAGGTACGCTACAATTCCTCA
CTAACCGAATCTGCACTCGAATATCCTTGTTCCGAACGTGAGGCTGACAC
TTTCTTCCGCATCCATCTTCATTTAGCGAGCAAATATAAAGAAGGGCGTC
ATAATGATGCAAGGTTTGTTAGAAGATCGATATGCAGATCGGGACTGCTT
GTACTATATGGCTCTCGGTTACTACAGGCTTGACGATGTCGTGTCAAGCA
GGAAATGTTTGGACAAGCTGCTCAAGATTGCTCCAAATTGCCGGCAAGCT
ATTTCCCTAATGGACATTGTGGAGGATAAAATTACTAGGGATGGAGTCAT
CGGAATATCAATTGTCTCGGGTATTGCGGTTGTTGGTGGACTTCTAGCTG
CTGCGTTTGCAGGTGGCAGACGATAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:568182..568957+

>Ggra9244.t1 ID=Ggra9244.t1|Name=Ggra9244.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000075_pilon:568182..568957+ (Gracilaria gracilis GNS1m male)
ATGTCTGCAAGACCTACGCCTCCTCCACCACCAACCGTGGGGGGCAGTGC
TCCTCCGCCACCACCGACTGCCGCTGCTCCTTCCGCACACCAACATGCGC
AGCAATTGCCTCCGGTGCAAACGCCCATCCCTCAATCTAGCACTGCCGTC
AGACGAACAGAACTAGACGATGACCTAGCGGAGGTAGATCTCAGTGCCGA
ACTTGATCGCTTTGAAGAGATTTACATGAAGGAATGTATGAAATCGCGTC
CAAATCCTACAGCGAAGTTCAACTACGCGTGGGCGCTTATCCGATCAAAA
GAGCGAGCAAATATAAAGAAGGGCGTCATAATGATGCAAGGTTTGTTAGA
AGATCGATATGCAGATCGGGACTGCTTGTACTATATGGCTCTCGGTTACT
ACAGGCTTGACGATGTCGTGTCAAGCAGGAAATGTTTGGACAAGCTGCTC
AAGATTGCTCCAAATTGCCGGCAAGCTATTTCCCTAATGGACATTGTGGA
GGATAAAATTACTAGGGATGGAGTCATCGGAATATCAATTGTCTCGGGTA
TTGCGGTTGTTGGTGGACTTCTAGCTGCTGCGTTTGCAGGTGGCAGACGA
TAA
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