Ggra9243.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9243.t1
Unique Name	Ggra9243.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:565369..567552 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	69293.ENSGACP00000021616
Preferred name	SDAD1
PFAMs	NUC130_3NT,SDA1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14856
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0010033,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031974,GO:0031981,GO:0034097,GO:0042221,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:1990823,GO:1990830
Evalue	1.64e-103
EggNOG OGs	KOG2229@1\|root,KOG2229@2759\|Eukaryota,38BYQ@33154\|Opisthokonta,3B9QQ@33208\|Metazoa,3CZ14@33213\|Bilateria,4808G@7711\|Chordata,48XZ0@7742\|Vertebrata,49QNW@7898\|Actinopterygii
Description	SDA1 domain containing 1
COG category	DZ
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9243	Ggra9243	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 565369..567552 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9243.t1.stop1	Ggra9243.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 565369..565371 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9243.t1.CDS1	Ggra9243.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 565369..567552 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9243.t1.exon1	Ggra9243.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 565369..567552 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9243.t1.start1	Ggra9243.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 567550..567552 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9243.t1	Ggra9243.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 565369..567552 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:565369..567552-
coding sequence from alignment at tig00000075_pilon:565369..567552-

mRNA sequence

>Ggra9243.t1 ID=Ggra9243.t1|Name=Ggra9243.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=728bp
MDVDLMILQERCRKDPLSYKDDFISQRRHFDALLSAANLNPSDPNPRLAE
VASFMSAVAHCYGSEGKKIAAEITGFLGEYGQAMNPDLRRSLVRLLCLLR
ARGAADPTAVIPLFFRLLSCNDKVLRRMVHGHIVSDIKKIQNSGHHSRKQ
LQTFLFTMVQDPSEVLVKRSLHVLVDLFRKRIWNDAKCANMIATACLHQA
VSVSIIASRFMLNSETRDQNQDSDDESDDESPEMRRTTRDGQKASDMWKA
YNMTGKKSTKQKKKMERIINRATRIKSSVTSRAISEKNPGHPQLEAMMLI
NDPQEFAERLFKDLQTRRKKESYENRLIFINLISRLVGTYELILFNFYPF
LQRYLQPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSP
PSVAAGMNAIRAICSRVPLAILDEENEWKPEQEQEAALLEDLVQYKTSKD
KGIMMAARSLIALYREVHPGLLQKKDRGRAGAQAVQKGEAAHARAYGEHM
YATGVEGIELLNAADSDDDNDGDDDDDDEVGESDIENNEGTGAGDENRKS
LEDAEVGDEDGVRVDGKRGSDATDDSKAESRDEEKEENTGNLPIEDDNDE
TGETKRLDAMQILSNEDFEKIRVRRAAKALGQSVRELNTGRVVDPDEIQG
PMKRERLTHEERMESIMKGREGRSKFGKKNEKGGGTSNKQKLKKKSNAMV
IHKRRKRSKQLSRRDKQVAKRRKRDYR*

spliced messenger RNA

>Ggra9243.t1 ID=Ggra9243.t1|Name=Ggra9243.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000075_pilon:565369..567552- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTTGATCTTATGATTCTTCAGGAAAGGTGTCGGAAAGACCCTCT
TTCGTACAAAGATGATTTCATTTCCCAAAGACGTCATTTTGATGCGCTTC
TGTCTGCTGCCAATTTAAATCCATCTGATCCAAATCCCCGCCTGGCAGAG
GTAGCCTCATTCATGAGCGCGGTGGCACACTGCTATGGCTCCGAGGGGAA
GAAAATTGCCGCAGAGATAACTGGTTTTCTTGGTGAATATGGTCAAGCAA
TGAACCCAGACCTTCGACGTTCGCTTGTTCGATTGTTATGTCTCCTGAGA
GCGAGAGGTGCTGCGGACCCGACGGCGGTCATCCCTTTGTTCTTTCGTCT
CTTGTCGTGCAACGATAAGGTATTGCGACGAATGGTTCACGGACATATCG
TATCTGATATTAAAAAGATTCAGAACAGTGGCCACCACAGTCGGAAGCAA
CTGCAGACTTTTTTGTTTACCATGGTTCAGGACCCCAGCGAAGTGTTGGT
AAAGCGAAGCTTGCACGTTTTAGTGGATTTGTTCCGAAAGCGAATATGGA
ATGACGCCAAGTGTGCCAATATGATTGCTACCGCGTGTCTCCATCAAGCA
GTTTCGGTATCCATCATAGCTTCGCGGTTCATGCTCAATTCGGAAACCAG
GGATCAAAACCAAGATTCCGACGACGAGTCTGACGATGAAAGTCCGGAGA
TGAGACGCACAACACGGGATGGACAGAAAGCGTCTGATATGTGGAAGGCG
TACAACATGACGGGGAAGAAATCGACGAAGCAAAAGAAGAAAATGGAGAG
GATTATCAACCGAGCAACTCGGATAAAAAGTTCAGTGACTTCTAGGGCAA
TATCAGAAAAGAATCCTGGCCATCCGCAGCTAGAAGCCATGATGCTTATC
AATGACCCGCAAGAGTTTGCAGAACGGCTTTTCAAAGATCTTCAGACCAG
GAGAAAGAAGGAGAGTTATGAGAATCGGCTTATCTTTATCAACTTGATAT
CTCGACTTGTTGGTACCTATGAACTAATCTTGTTTAATTTTTATCCTTTC
TTACAGAGATACCTTCAACCGGCTCAGCCAGAAGTAACACGGGTTCTAGC
ATATTTGACGCAAGCATGTCACGAGAAGGTTCCTGCCGATGTGCTGCATC
CTATTCTACGAGGTCTTGCGGATACGTTCGTTTCTGAAAGAAGCTCACCT
CCATCTGTAGCAGCGGGTATGAACGCGATTCGGGCCATTTGTTCTCGTGT
TCCGCTCGCTATTCTAGACGAAGAGAATGAGTGGAAGCCTGAACAAGAGC
AGGAGGCGGCATTATTAGAAGATCTGGTACAATATAAAACGAGCAAAGAT
AAAGGCATAATGATGGCAGCTCGATCTTTGATTGCTCTCTACAGAGAGGT
ACATCCGGGTTTATTACAGAAGAAGGACAGAGGTCGTGCTGGGGCTCAAG
CAGTGCAGAAGGGAGAGGCCGCGCATGCAAGAGCTTACGGGGAGCACATG
TATGCCACAGGAGTGGAAGGAATTGAACTGTTGAACGCCGCAGATTCAGA
CGACGACAACGACGGCGACGACGATGACGATGACGAAGTTGGCGAATCTG
ATATAGAAAATAATGAAGGAACTGGGGCCGGAGATGAGAACAGAAAGAGC
TTGGAAGACGCCGAAGTCGGGGACGAGGACGGTGTCCGCGTGGATGGAAA
ACGGGGTTCGGATGCTACTGACGACAGTAAAGCCGAAAGCAGGGACGAAG
AGAAGGAAGAGAATACAGGAAATCTGCCAATCGAAGACGATAATGATGAA
ACTGGAGAAACGAAACGTTTGGATGCGATGCAAATCCTATCAAACGAGGA
TTTCGAGAAGATCCGAGTGCGACGTGCTGCCAAGGCGCTAGGGCAAAGCG
TGAGAGAGCTGAATACGGGGAGAGTAGTGGATCCAGATGAGATTCAAGGA
CCCATGAAACGGGAGCGTCTGACGCACGAAGAACGCATGGAAAGCATTAT
GAAAGGCAGGGAAGGGAGAAGCAAGTTTGGGAAAAAGAACGAGAAAGGCG
GCGGTACAAGCAACAAACAAAAATTGAAGAAGAAATCAAATGCTATGGTG
ATTCACAAACGAAGAAAACGAAGTAAGCAACTGTCTCGAAGAGATAAACA
GGTTGCGAAACGAAGGAAGAGAGATTATCGGTGA

protein sequence of Ggra9243.t1

>Ggra9243.t1 ID=Ggra9243.t1|Name=Ggra9243.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=728bp
MDVDLMILQERCRKDPLSYKDDFISQRRHFDALLSAANLNPSDPNPRLAE
VASFMSAVAHCYGSEGKKIAAEITGFLGEYGQAMNPDLRRSLVRLLCLLR
ARGAADPTAVIPLFFRLLSCNDKVLRRMVHGHIVSDIKKIQNSGHHSRKQ
LQTFLFTMVQDPSEVLVKRSLHVLVDLFRKRIWNDAKCANMIATACLHQA
VSVSIIASRFMLNSETRDQNQDSDDESDDESPEMRRTTRDGQKASDMWKA
YNMTGKKSTKQKKKMERIINRATRIKSSVTSRAISEKNPGHPQLEAMMLI
NDPQEFAERLFKDLQTRRKKESYENRLIFINLISRLVGTYELILFNFYPF
LQRYLQPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSP
PSVAAGMNAIRAICSRVPLAILDEENEWKPEQEQEAALLEDLVQYKTSKD
KGIMMAARSLIALYREVHPGLLQKKDRGRAGAQAVQKGEAAHARAYGEHM
YATGVEGIELLNAADSDDDNDGDDDDDDEVGESDIENNEGTGAGDENRKS
LEDAEVGDEDGVRVDGKRGSDATDDSKAESRDEEKEENTGNLPIEDDNDE
TGETKRLDAMQILSNEDFEKIRVRRAAKALGQSVRELNTGRVVDPDEIQG
PMKRERLTHEERMESIMKGREGRSKFGKKNEKGGGTSNKQKLKKKSNAMV
IHKRRKRSKQLSRRDKQVAKRRKRDYR*

mRNA from alignment at tig00000075_pilon:565369..567552-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9243.t1 ID=Ggra9243.t1|Name=Ggra9243.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000075_pilon:565369..567552- (Gracilaria gracilis GNS1m male)
ATGGACGTTGATCTTATGATTCTTCAGGAAAGGTGTCGGAAAGACCCTCT
TTCGTACAAAGATGATTTCATTTCCCAAAGACGTCATTTTGATGCGCTTC
TGTCTGCTGCCAATTTAAATCCATCTGATCCAAATCCCCGCCTGGCAGAG
GTAGCCTCATTCATGAGCGCGGTGGCACACTGCTATGGCTCCGAGGGGAA
GAAAATTGCCGCAGAGATAACTGGTTTTCTTGGTGAATATGGTCAAGCAA
TGAACCCAGACCTTCGACGTTCGCTTGTTCGATTGTTATGTCTCCTGAGA
GCGAGAGGTGCTGCGGACCCGACGGCGGTCATCCCTTTGTTCTTTCGTCT
CTTGTCGTGCAACGATAAGGTATTGCGACGAATGGTTCACGGACATATCG
TATCTGATATTAAAAAGATTCAGAACAGTGGCCACCACAGTCGGAAGCAA
CTGCAGACTTTTTTGTTTACCATGGTTCAGGACCCCAGCGAAGTGTTGGT
AAAGCGAAGCTTGCACGTTTTAGTGGATTTGTTCCGAAAGCGAATATGGA
ATGACGCCAAGTGTGCCAATATGATTGCTACCGCGTGTCTCCATCAAGCA
GTTTCGGTATCCATCATAGCTTCGCGGTTCATGCTCAATTCGGAAACCAG
GGATCAAAACCAAGATTCCGACGACGAGTCTGACGATGAAAGTCCGGAGA
TGAGACGCACAACACGGGATGGACAGAAAGCGTCTGATATGTGGAAGGCG
TACAACATGACGGGGAAGAAATCGACGAAGCAAAAGAAGAAAATGGAGAG
GATTATCAACCGAGCAACTCGGATAAAAAGTTCAGTGACTTCTAGGGCAA
TATCAGAAAAGAATCCTGGCCATCCGCAGCTAGAAGCCATGATGCTTATC
AATGACCCGCAAGAGTTTGCAGAACGGCTTTTCAAAGATCTTCAGACCAG
GAGAAAGAAGGAGAGTTATGAGAATCGGCTTATCTTTATCAACTTGATAT
CTCGACTTGTTGGTACCTATGAACTAATCTTGTTTAATTTTTATCCTTTC
TTACAGAGATACCTTCAACCGGCTCAGCCAGAAGTAACACGGGTTCTAGC
ATATTTGACGCAAGCATGTCACGAGAAGGTTCCTGCCGATGTGCTGCATC
CTATTCTACGAGGTCTTGCGGATACGTTCGTTTCTGAAAGAAGCTCACCT
CCATCTGTAGCAGCGGGTATGAACGCGATTCGGGCCATTTGTTCTCGTGT
TCCGCTCGCTATTCTAGACGAAGAGAATGAGTGGAAGCCTGAACAAGAGC
AGGAGGCGGCATTATTAGAAGATCTGGTACAATATAAAACGAGCAAAGAT
AAAGGCATAATGATGGCAGCTCGATCTTTGATTGCTCTCTACAGAGAGGT
ACATCCGGGTTTATTACAGAAGAAGGACAGAGGTCGTGCTGGGGCTCAAG
CAGTGCAGAAGGGAGAGGCCGCGCATGCAAGAGCTTACGGGGAGCACATG
TATGCCACAGGAGTGGAAGGAATTGAACTGTTGAACGCCGCAGATTCAGA
CGACGACAACGACGGCGACGACGATGACGATGACGAAGTTGGCGAATCTG
ATATAGAAAATAATGAAGGAACTGGGGCCGGAGATGAGAACAGAAAGAGC
TTGGAAGACGCCGAAGTCGGGGACGAGGACGGTGTCCGCGTGGATGGAAA
ACGGGGTTCGGATGCTACTGACGACAGTAAAGCCGAAAGCAGGGACGAAG
AGAAGGAAGAGAATACAGGAAATCTGCCAATCGAAGACGATAATGATGAA
ACTGGAGAAACGAAACGTTTGGATGCGATGCAAATCCTATCAAACGAGGA
TTTCGAGAAGATCCGAGTGCGACGTGCTGCCAAGGCGCTAGGGCAAAGCG
TGAGAGAGCTGAATACGGGGAGAGTAGTGGATCCAGATGAGATTCAAGGA
CCCATGAAACGGGAGCGTCTGACGCACGAAGAACGCATGGAAAGCATTAT
GAAAGGCAGGGAAGGGAGAAGCAAGTTTGGGAAAAAGAACGAGAAAGGCG
GCGGTACAAGCAACAAACAAAAATTGAAGAAGAAATCAAATGCTATGGTG
ATTCACAAACGAAGAAAACGAAGTAAGCAACTGTCTCGAAGAGATAAACA
GGTTGCGAAACGAAGGAAGAGAGATTATCGGTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:565369..567552-

>Ggra9243.t1 ID=Ggra9243.t1|Name=Ggra9243.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00000075_pilon:565369..567552- (Gracilaria gracilis GNS1m male)
ATGGACGTTGATCTTATGATTCTTCAGGAAAGGTGTCGGAAAGACCCTCT
TTCGTACAAAGATGATTTCATTTCCCAAAGACGTCATTTTGATGCGCTTC
TGTCTGCTGCCAATTTAAATCCATCTGATCCAAATCCCCGCCTGGCAGAG
GTAGCCTCATTCATGAGCGCGGTGGCACACTGCTATGGCTCCGAGGGGAA
GAAAATTGCCGCAGAGATAACTGGTTTTCTTGGTGAATATGGTCAAGCAA
TGAACCCAGACCTTCGACGTTCGCTTGTTCGATTGTTATGTCTCCTGAGA
GCGAGAGGTGCTGCGGACCCGACGGCGGTCATCCCTTTGTTCTTTCGTCT
CTTGTCGTGCAACGATAAGGTATTGCGACGAATGGTTCACGGACATATCG
TATCTGATATTAAAAAGATTCAGAACAGTGGCCACCACAGTCGGAAGCAA
CTGCAGACTTTTTTGTTTACCATGGTTCAGGACCCCAGCGAAGTGTTGGT
AAAGCGAAGCTTGCACGTTTTAGTGGATTTGTTCCGAAAGCGAATATGGA
ATGACGCCAAGTGTGCCAATATGATTGCTACCGCGTGTCTCCATCAAGCA
GTTTCGGTATCCATCATAGCTTCGCGGTTCATGCTCAATTCGGAAACCAG
GGATCAAAACCAAGATTCCGACGACGAGTCTGACGATGAAAGTCCGGAGA
TGAGACGCACAACACGGGATGGACAGAAAGCGTCTGATATGTGGAAGGCG
TACAACATGACGGGGAAGAAATCGACGAAGCAAAAGAAGAAAATGGAGAG
GATTATCAACCGAGCAACTCGGATAAAAAGTTCAGTGACTTCTAGGGCAA
TATCAGAAAAGAATCCTGGCCATCCGCAGCTAGAAGCCATGATGCTTATC
AATGACCCGCAAGAGTTTGCAGAACGGCTTTTCAAAGATCTTCAGACCAG
GAGAAAGAAGGAGAGTTATGAGAATCGGCTTATCTTTATCAACTTGATAT
CTCGACTTGTTGGTACCTATGAACTAATCTTGTTTAATTTTTATCCTTTC
TTACAGAGATACCTTCAACCGGCTCAGCCAGAAGTAACACGGGTTCTAGC
ATATTTGACGCAAGCATGTCACGAGAAGGTTCCTGCCGATGTGCTGCATC
CTATTCTACGAGGTCTTGCGGATACGTTCGTTTCTGAAAGAAGCTCACCT
CCATCTGTAGCAGCGGGTATGAACGCGATTCGGGCCATTTGTTCTCGTGT
TCCGCTCGCTATTCTAGACGAAGAGAATGAGTGGAAGCCTGAACAAGAGC
AGGAGGCGGCATTATTAGAAGATCTGGTACAATATAAAACGAGCAAAGAT
AAAGGCATAATGATGGCAGCTCGATCTTTGATTGCTCTCTACAGAGAGGT
ACATCCGGGTTTATTACAGAAGAAGGACAGAGGTCGTGCTGGGGCTCAAG
CAGTGCAGAAGGGAGAGGCCGCGCATGCAAGAGCTTACGGGGAGCACATG
TATGCCACAGGAGTGGAAGGAATTGAACTGTTGAACGCCGCAGATTCAGA
CGACGACAACGACGGCGACGACGATGACGATGACGAAGTTGGCGAATCTG
ATATAGAAAATAATGAAGGAACTGGGGCCGGAGATGAGAACAGAAAGAGC
TTGGAAGACGCCGAAGTCGGGGACGAGGACGGTGTCCGCGTGGATGGAAA
ACGGGGTTCGGATGCTACTGACGACAGTAAAGCCGAAAGCAGGGACGAAG
AGAAGGAAGAGAATACAGGAAATCTGCCAATCGAAGACGATAATGATGAA
ACTGGAGAAACGAAACGTTTGGATGCGATGCAAATCCTATCAAACGAGGA
TTTCGAGAAGATCCGAGTGCGACGTGCTGCCAAGGCGCTAGGGCAAAGCG
TGAGAGAGCTGAATACGGGGAGAGTAGTGGATCCAGATGAGATTCAAGGA
CCCATGAAACGGGAGCGTCTGACGCACGAAGAACGCATGGAAAGCATTAT
GAAAGGCAGGGAAGGGAGAAGCAAGTTTGGGAAAAAGAACGAGAAAGGCG
GCGGTACAAGCAACAAACAAAAATTGAAGAAGAAATCAAATGCTATGGTG
ATTCACAAACGAAGAAAACGAAGTAAGCAACTGTCTCGAAGAGATAAACA
GGTTGCGAAACGAAGGAAGAGAGATTATCGGTGA