Ggra9241.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9241.t1
Unique NameGgra9241.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:562962..564059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9241Ggra9241Gracilaria gracilis GNS1m malegenetig00000075_pilon 562962..564059 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9241.t1.stop1Ggra9241.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 562962..562964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9241.t1.CDS1Ggra9241.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 562962..564059 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9241.t1.exon1Ggra9241.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 562962..564059 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9241.t1.start1Ggra9241.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 564057..564059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9241.t1Ggra9241.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 562962..564059 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9241.t1 ID=Ggra9241.t1|Name=Ggra9241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MDVDASSPQRADCTHQMLVESALASLESTLRRGIAPDSLTPFHPLEKLAD
LYLERPTGHRLDNIDRALTSYTLASKTAACAIQPSADLSRARLSAKLAKC
WYLRLLFVSEQCPDMTLLKRAHLRAAADAIDIALQRYDDCDDWRHDEQQC
VLYKQALMCKGFIYHAMCTNIDLQTFCDVQQCDDADLQEKQTLWRRMYVN
SCIQSLEKVLLSDTFKQQQQRQHQQQQQQQQQQQQQQQRQPNSLPSTSNQ
TKSPSVNKSQTTCNPPVQNAPLQHDVHAVTKARAIICLARAYVDAPNTDS
KKVSNVLSMLAGVTKMLETVDVNKHHDGFDIKPHDLQRMKEDAECLHKLL
KDSRPAASQGGCVIS*
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spliced messenger RNA

>Ggra9241.t1 ID=Ggra9241.t1|Name=Ggra9241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000075_pilon:562962..564059- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGATGCTTCGTCGCCTCAGCGCGCAGACTGCACGCACCAGAT
GCTTGTCGAGAGCGCGCTGGCTTCTTTGGAGAGCACGTTGAGAAGGGGCA
TTGCTCCGGACTCGTTGACGCCGTTTCATCCCTTGGAGAAGTTGGCGGAC
TTGTATTTGGAACGTCCTACCGGCCATCGGTTGGATAATATCGACCGTGC
GTTGACGTCGTACACGCTGGCGTCGAAGACCGCCGCTTGTGCCATACAGC
CGTCGGCGGATCTCAGTCGCGCAAGATTGTCGGCAAAACTGGCAAAGTGT
TGGTATTTGAGGCTGCTGTTTGTTTCGGAGCAGTGTCCAGACATGACGCT
ACTTAAACGCGCCCATCTCAGGGCGGCCGCTGATGCCATTGACATTGCGT
TGCAGCGCTACGACGATTGTGACGATTGGCGCCATGATGAACAGCAGTGC
GTGCTTTACAAGCAAGCTTTGATGTGTAAGGGCTTTATATATCATGCGAT
GTGTACCAATATTGATCTTCAAACCTTTTGTGACGTGCAGCAATGCGATG
ACGCTGATCTTCAAGAGAAACAAACGCTTTGGAGACGCATGTATGTTAAC
AGTTGCATTCAATCCTTGGAAAAAGTCCTCTTGTCTGATACTTTCAAACA
ACAACAACAACGACAACATCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACGACAACCCAACTCATTGCCTTCCACCTCAAACCAA
ACCAAATCCCCTTCTGTCAACAAATCTCAAACCACTTGTAACCCCCCTGT
ACAAAACGCCCCTCTTCAGCATGATGTGCACGCCGTCACAAAAGCACGCG
CCATCATATGTCTCGCCCGCGCCTATGTCGACGCACCGAACACCGACTCG
AAAAAAGTGTCCAACGTGCTCTCGATGTTGGCCGGTGTGACCAAAATGTT
GGAAACAGTCGATGTGAACAAACACCACGACGGCTTCGATATCAAACCGC
ACGATTTGCAACGTATGAAAGAGGACGCCGAATGTCTCCACAAATTGCTC
AAGGACAGTCGTCCTGCTGCCTCTCAAGGTGGATGCGTGATTTCGTAG
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protein sequence of Ggra9241.t1

>Ggra9241.t1 ID=Ggra9241.t1|Name=Ggra9241.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MDVDASSPQRADCTHQMLVESALASLESTLRRGIAPDSLTPFHPLEKLAD
LYLERPTGHRLDNIDRALTSYTLASKTAACAIQPSADLSRARLSAKLAKC
WYLRLLFVSEQCPDMTLLKRAHLRAAADAIDIALQRYDDCDDWRHDEQQC
VLYKQALMCKGFIYHAMCTNIDLQTFCDVQQCDDADLQEKQTLWRRMYVN
SCIQSLEKVLLSDTFKQQQQRQHQQQQQQQQQQQQQQQRQPNSLPSTSNQ
TKSPSVNKSQTTCNPPVQNAPLQHDVHAVTKARAIICLARAYVDAPNTDS
KKVSNVLSMLAGVTKMLETVDVNKHHDGFDIKPHDLQRMKEDAECLHKLL
KDSRPAASQGGCVIS*
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mRNA from alignment at tig00000075_pilon:562962..564059-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9241.t1 ID=Ggra9241.t1|Name=Ggra9241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000075_pilon:562962..564059- (Gracilaria gracilis GNS1m male)
ATGGACGTGGATGCTTCGTCGCCTCAGCGCGCAGACTGCACGCACCAGAT
GCTTGTCGAGAGCGCGCTGGCTTCTTTGGAGAGCACGTTGAGAAGGGGCA
TTGCTCCGGACTCGTTGACGCCGTTTCATCCCTTGGAGAAGTTGGCGGAC
TTGTATTTGGAACGTCCTACCGGCCATCGGTTGGATAATATCGACCGTGC
GTTGACGTCGTACACGCTGGCGTCGAAGACCGCCGCTTGTGCCATACAGC
CGTCGGCGGATCTCAGTCGCGCAAGATTGTCGGCAAAACTGGCAAAGTGT
TGGTATTTGAGGCTGCTGTTTGTTTCGGAGCAGTGTCCAGACATGACGCT
ACTTAAACGCGCCCATCTCAGGGCGGCCGCTGATGCCATTGACATTGCGT
TGCAGCGCTACGACGATTGTGACGATTGGCGCCATGATGAACAGCAGTGC
GTGCTTTACAAGCAAGCTTTGATGTGTAAGGGCTTTATATATCATGCGAT
GTGTACCAATATTGATCTTCAAACCTTTTGTGACGTGCAGCAATGCGATG
ACGCTGATCTTCAAGAGAAACAAACGCTTTGGAGACGCATGTATGTTAAC
AGTTGCATTCAATCCTTGGAAAAAGTCCTCTTGTCTGATACTTTCAAACA
ACAACAACAACGACAACATCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACGACAACCCAACTCATTGCCTTCCACCTCAAACCAA
ACCAAATCCCCTTCTGTCAACAAATCTCAAACCACTTGTAACCCCCCTGT
ACAAAACGCCCCTCTTCAGCATGATGTGCACGCCGTCACAAAAGCACGCG
CCATCATATGTCTCGCCCGCGCCTATGTCGACGCACCGAACACCGACTCG
AAAAAAGTGTCCAACGTGCTCTCGATGTTGGCCGGTGTGACCAAAATGTT
GGAAACAGTCGATGTGAACAAACACCACGACGGCTTCGATATCAAACCGC
ACGATTTGCAACGTATGAAAGAGGACGCCGAATGTCTCCACAAATTGCTC
AAGGACAGTCGTCCTGCTGCCTCTCAAGGTGGATGCGTGATTTCGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:562962..564059-

>Ggra9241.t1 ID=Ggra9241.t1|Name=Ggra9241.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000075_pilon:562962..564059- (Gracilaria gracilis GNS1m male)
ATGGACGTGGATGCTTCGTCGCCTCAGCGCGCAGACTGCACGCACCAGAT
GCTTGTCGAGAGCGCGCTGGCTTCTTTGGAGAGCACGTTGAGAAGGGGCA
TTGCTCCGGACTCGTTGACGCCGTTTCATCCCTTGGAGAAGTTGGCGGAC
TTGTATTTGGAACGTCCTACCGGCCATCGGTTGGATAATATCGACCGTGC
GTTGACGTCGTACACGCTGGCGTCGAAGACCGCCGCTTGTGCCATACAGC
CGTCGGCGGATCTCAGTCGCGCAAGATTGTCGGCAAAACTGGCAAAGTGT
TGGTATTTGAGGCTGCTGTTTGTTTCGGAGCAGTGTCCAGACATGACGCT
ACTTAAACGCGCCCATCTCAGGGCGGCCGCTGATGCCATTGACATTGCGT
TGCAGCGCTACGACGATTGTGACGATTGGCGCCATGATGAACAGCAGTGC
GTGCTTTACAAGCAAGCTTTGATGTGTAAGGGCTTTATATATCATGCGAT
GTGTACCAATATTGATCTTCAAACCTTTTGTGACGTGCAGCAATGCGATG
ACGCTGATCTTCAAGAGAAACAAACGCTTTGGAGACGCATGTATGTTAAC
AGTTGCATTCAATCCTTGGAAAAAGTCCTCTTGTCTGATACTTTCAAACA
ACAACAACAACGACAACATCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACGACAACCCAACTCATTGCCTTCCACCTCAAACCAA
ACCAAATCCCCTTCTGTCAACAAATCTCAAACCACTTGTAACCCCCCTGT
ACAAAACGCCCCTCTTCAGCATGATGTGCACGCCGTCACAAAAGCACGCG
CCATCATATGTCTCGCCCGCGCCTATGTCGACGCACCGAACACCGACTCG
AAAAAAGTGTCCAACGTGCTCTCGATGTTGGCCGGTGTGACCAAAATGTT
GGAAACAGTCGATGTGAACAAACACCACGACGGCTTCGATATCAAACCGC
ACGATTTGCAACGTATGAAAGAGGACGCCGAATGTCTCCACAAATTGCTC
AAGGACAGTCGTCCTGCTGCCTCTCAAGGTGGATGCGTGATTTCGTAG
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