Ggra9238.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9238.t1
Unique NameGgra9238.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:464299..465444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707302.1
PFAMsCSTF2_hinge,CSTF_C,RRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K14407
KEGG Pathwayko03015,map03015
Evalue1.66e-42
EggNOG OGsCOG0724@1|root,KOG0108@2759|Eukaryota
Descriptionpre-mRNA cleavage required for polyadenylation
COG categoryH
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9238Ggra9238Gracilaria gracilis GNS1m malegenetig00000075_pilon 464299..465444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1Ggra9238.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 464299..465444 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1.stop1Ggra9238.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 464299..464301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1.CDS1Ggra9238.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 464299..464520 -
Ggra9238.t1.CDS2Ggra9238.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 464869..465444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1.exon1Ggra9238.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 464299..464520 -
Ggra9238.t1.exon2Ggra9238.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 464869..465444 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1.intron1Ggra9238.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 464521..464868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9238.t1.start1Ggra9238.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 465442..465444 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQN
ISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPE
IHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGMGMGEQEAF
LQSVMSMTQEEMSRLPSEYRNYMLELKQFLAMHGAGGLNPGMNQPMPPGM
PPGGPHPPQLQKQFR*
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spliced messenger RNA

>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000075_pilon:464299..465444- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGACCCCCGGGAACCACCGTCTTCGTTGGTAACATCTCATACGA
CACTACGGAGGAGCAGCTAAACGAAGTATTCTCTCAAGTAGGAAATGTCG
TCAACTTCCGTCTTATGCACGACAACGAGACCGGACGTGCGAAAGGCTAT
GGTTTCTGCGAGTACGAGGACAAGGAGACCGCCATGAGTGCCCGACGCAA
TCTGAACGGCACCATGCTTAACGGTCGACCGCTTCGCGTCGACTTCACTG
ATAGTGACAAACAGATCGCCGCCCGAAATGGACCAAACCTCCCCCAGAAC
ATATCTACACTACCAAACAAGCCTGGCGTTCAGAACTTACCTCCGAAACC
TGGTCCCCAAATGCCAAATCATCCGAACATGCAGCATGGAGGACTGCCTC
CTGCTCTGGCTTCCGCCAATCCTTCAATGGAGCGCATGTCATTGCCTGAA
ATCCATCAAACTATGGTTCATCTAAAGAAGGCCATTGTGCAGAATCCAAA
TGAGATGCGCGATCTATTGCTTGCGAACCCCCGTCTTGCCCAAGCCATAA
TGCAGGGCCAGATCATGCTGGGGATGGGAATGGGGGAACAAGAGGCATTC
CTGCAAAGTGTCATGAGTATGACACAAGAGGAGATGTCTCGGTTACCTTC
TGAATATCGCAACTATATGCTTGAACTGAAACAGTTTTTGGCAATGCATG
GTGCTGGAGGTCTGAACCCAGGCATGAATCAACCTATGCCGCCTGGGATG
CCCCCCGGAGGACCACACCCACCTCAACTGCAAAAGCAGTTTCGGTAA
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protein sequence of Ggra9238.t1

>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNETGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARNGPNLPQN
ISTLPNKPGVQNLPPKPGPQMPNHPNMQHGGLPPALASANPSMERMSLPE
IHQTMVHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQIMLGMGMGEQEAF
LQSVMSMTQEEMSRLPSEYRNYMLELKQFLAMHGAGGLNPGMNQPMPPGM
PPGGPHPPQLQKQFR*
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mRNA from alignment at tig00000075_pilon:464299..465444-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000075_pilon:464299..465444- (Gracilaria gracilis GNS1m male)
ATGGGCCGACCCCCGGGAACCACCGTCTTCGTTGGTAACATCTCATACGA
CACTACGGAGGAGCAGCTAAACGAAGTATTCTCTCAAGTAGGAAATGTCG
TCAACTTCCGTCTTATGCACGACAACGAGACCGGACGTGCGAAAGGCTAT
GGTTTCTGCGAGTACGAGGACAAGGAGACCGCCATGAGTGCCCGACGCAA
TCTGAACGGCACCATGCTTAACGGTCGACCGCTTCGCGTCGACTTCACTG
ATAGTGACAAACAGATCGCCGCCCGAAATGGACCAAACCTCCCCCAGAAC
ATATCTACACTACCAAACAAGCCTGGCGTTCAGAACTTACCTCCGAAACC
TGGTCCCCAAATGCCAAATCATCCGAACATGCAGCATGGAGGACTGCCTC
CTGCTCTGGCTTCCGCCAATCCTTCAATGGAGCGCATGTCATTGCCTGAA
ATCCATCAAACTATGGTTCATCTAAAGAAGGCCATTGTGCAGAATCCAAA
TGAGATGCGCGATCTATTGCTTGCGAACCCCCGTCTTGCCCAAGCCATAA
TGCAGGGCCAGATCATGCTGGGGATGGTGCCCCCGCCGATGATGCCCACA
CCGCAACCCCACCCGCCAGTGCAGCAAAGACCTCCACCACAACCAAGACA
ACGACCACCACCGCCTGTGCCACCACGCAATCAACCGCCACCGCGTAATC
AGCCACCACCGCGTAATCAACCACCACCGCGTAATCAGCCACCACCGCGT
AATCAGCCACCACCGCGTAATCAGCCGCCACCGCGTAATCAACCTCCACC
ACCCCTCTCACATGTTCCTCCCCCAACACATGTGAATCCACCCCCACCCC
CACAGAACGGCCCACCGCCACAACCCAATATGCCGCACGGGGCCATGCAA
ATGCCGGGCATGCCTTTCGCGCAGGGAATGGGGGAACAAGAGGCATTCCT
GCAAAGTGTCATGAGTATGACACAAGAGGAGATGTCTCGGTTACCTTCTG
AATATCGCAACTATATGCTTGAACTGAAACAGTTTTTGGCAATGCATGGT
GCTGGAGGTCTGAACCCAGGCATGAATCAACCTATGCCGCCTGGGATGCC
CCCCGGAGGACCACACCCACCTCAACTGCAAAAGCAGTTTCGGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:464299..465444-

>Ggra9238.t1 ID=Ggra9238.t1|Name=Ggra9238.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000075_pilon:464299..465444- (Gracilaria gracilis GNS1m male)
ATGGGCCGACCCCCGGGAACCACCGTCTTCGTTGGTAACATCTCATACGA
CACTACGGAGGAGCAGCTAAACGAAGTATTCTCTCAAGTAGGAAATGTCG
TCAACTTCCGTCTTATGCACGACAACGAGACCGGACGTGCGAAAGGCTAT
GGTTTCTGCGAGTACGAGGACAAGGAGACCGCCATGAGTGCCCGACGCAA
TCTGAACGGCACCATGCTTAACGGTCGACCGCTTCGCGTCGACTTCACTG
ATAGTGACAAACAGATCGCCGCCCGAAATGGACCAAACCTCCCCCAGAAC
ATATCTACACTACCAAACAAGCCTGGCGTTCAGAACTTACCTCCGAAACC
TGGTCCCCAAATGCCAAATCATCCGAACATGCAGCATGGAGGACTGCCTC
CTGCTCTGGCTTCCGCCAATCCTTCAATGGAGCGCATGTCATTGCCTGAA
ATCCATCAAACTATGGTTCATCTAAAGAAGGCCATTGTGCAGAATCCAAA
TGAGATGCGCGATCTATTGCTTGCGAACCCCCGTCTTGCCCAAGCCATAA
TGCAGGGCCAGATCATGCTGGGGATGGGAATGGGGGAACAAGAGGCATTC
CTGCAAAGTGTCATGAGTATGACACAAGAGGAGATGTCTCGGTTACCTTC
TGAATATCGCAACTATATGCTTGAACTGAAACAGTTTTTGGCAATGCATG
GTGCTGGAGGTCTGAACCCAGGCATGAATCAACCTATGCCGCCTGGGATG
CCCCCCGGAGGACCACACCCACCTCAACTGCAAAAGCAGTTTCGGTAA
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