Ggra9236.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9236.t1
Unique NameGgra9236.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length575
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:459767..461582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706320.1
Preferred nameCCT7
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K09499
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006457,GO:0006458,GO:0006810,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0042221,GO:0042802,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue9.85e-262
EggNOG OGsCOG0459@1|root,KOG0361@2759|Eukaryota
Descriptionprotein binding involved in protein folding
COG categoryO
BRITEko00000,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9236Ggra9236Gracilaria gracilis GNS1m malegenetig00000075_pilon 459767..461582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1Ggra9236.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 459767..461582 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1.stop1Ggra9236.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 459767..459769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1.CDS1Ggra9236.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 459767..461415 -
Ggra9236.t1.CDS2Ggra9236.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 461507..461582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1.exon1Ggra9236.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 459767..461415 -
Ggra9236.t1.exon2Ggra9236.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 461507..461582 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1.intron1Ggra9236.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 461416..461506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9236.t1.start1Ggra9236.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 461580..461582 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9236.t1 ID=Ggra9236.t1|Name=Ggra9236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp
MSQFLAPQIVFLKEGTDTSQGLGQLVSNINACLAIVDILRTTLGPRGMDK
LINEGKGKVTISNDGATILKLLDITHPAARTLVDIAKSQDAEVGDGTTSV
TLLAGEMLKNCKDYVQDGLHPRTIIRAYRKAALLAVERVRELAIDIHGKD
AKETRLLLQRCAATSLNSKLIAHHKEFFSSIVTDAVLSLDEDLDLSMIGI
KKVQGGSATDSMLVKGVAFKKTFSYAGFEQQPKKFVNPRVITLNIELELK
AEKENAEVRVDSTKEYQAIVDAEWDIIYEKLDKIVKTGAKVVLSRLAIGD
LATQYFADRDIFCAGRVAEADLSRVTRAVGGVVQTTMNSVVESDYDAILG
TCELFEEVQIGNERYNMFTGCPKTKTATIIVRGGSEQFMAETERSLHDSI
MIARRTIKHSTAVAGGGAIEMELSRFLRDYSLKVHGKEQLLILAFAKALE
VIPRTLSDNAGFDSTDILNKLRAKHATGEDGKWYGVDIEEAGICNTWDSF
VWEPALVKINAISAATEAACMILSVDETVQNPQSESSQPAPMGGRGPGGG
MGGMGGMMAGAGRGVRKFKGRGGR*
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spliced messenger RNA

>Ggra9236.t1 ID=Ggra9236.t1|Name=Ggra9236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00000075_pilon:459767..461582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGTTTCTCGCCCCCCAGATCGTGTTCCTTAAGGAAGGAACTGA
TACAAGTCAGGGTCTTGGCCAACTTGTCTCGAATATAAATGCATGCCTCG
CTATCGTCGATATATTGCGAACCACGTTGGGGCCGAGGGGTATGGATAAG
CTCATCAATGAAGGGAAGGGCAAAGTAACTATATCTAATGATGGAGCTAC
AATCCTGAAACTGCTGGATATCACTCATCCTGCTGCACGCACTCTGGTGG
ATATAGCAAAATCGCAAGACGCTGAAGTTGGAGATGGGACAACGTCTGTT
ACGCTTTTGGCAGGCGAAATGCTCAAAAACTGCAAGGATTACGTACAAGA
CGGCCTACACCCTCGTACTATTATTCGGGCGTATCGAAAAGCCGCGTTGC
TCGCAGTGGAGCGTGTTCGAGAGCTTGCTATTGATATTCATGGAAAGGAC
GCCAAAGAAACACGATTGCTATTGCAGAGATGTGCAGCGACATCCTTAAA
CTCGAAGCTGATTGCCCACCACAAGGAATTTTTCTCGAGCATTGTTACCG
ATGCTGTGCTTTCGCTTGACGAGGATCTTGATCTGTCGATGATTGGTATC
AAGAAAGTTCAAGGCGGATCTGCTACCGATTCGATGCTTGTGAAGGGCGT
TGCTTTCAAGAAGACATTTTCGTACGCGGGTTTCGAGCAACAACCGAAGA
AGTTTGTGAACCCTAGAGTTATAACATTGAACATAGAGTTGGAGCTAAAA
GCTGAAAAGGAGAATGCTGAAGTAAGAGTAGATTCAACGAAAGAGTATCA
AGCCATTGTGGACGCCGAGTGGGACATTATCTATGAAAAACTGGACAAGA
TCGTTAAGACTGGCGCGAAGGTAGTACTGTCTCGTTTGGCAATTGGAGAC
CTTGCTACTCAGTACTTTGCAGATAGGGACATTTTCTGTGCCGGAAGAGT
TGCCGAGGCTGATTTGAGTCGTGTTACGAGAGCTGTAGGCGGGGTAGTTC
AAACCACCATGAACAGTGTGGTGGAGTCAGACTACGATGCAATTCTTGGC
ACCTGCGAGCTTTTCGAAGAGGTCCAGATTGGGAACGAACGGTATAACAT
GTTCACAGGATGCCCAAAAACAAAAACTGCAACCATTATTGTAAGGGGTG
GTTCGGAGCAGTTCATGGCAGAAACAGAACGTTCTTTGCATGATTCAATC
ATGATTGCTCGAAGGACGATCAAGCATTCAACTGCCGTGGCAGGAGGAGG
TGCAATCGAAATGGAGCTAAGTCGTTTCTTACGAGATTACTCCCTCAAGG
TGCATGGTAAGGAGCAACTCTTAATTCTTGCCTTTGCCAAGGCCCTCGAA
GTTATCCCGAGAACTCTCAGTGACAACGCTGGATTCGACTCCACTGACAT
TCTTAATAAACTTCGAGCGAAGCATGCTACTGGGGAGGACGGTAAGTGGT
ATGGCGTGGATATAGAAGAAGCAGGAATATGCAACACATGGGATTCCTTT
GTATGGGAACCGGCTCTGGTTAAGATTAACGCCATCAGCGCTGCAACTGA
AGCTGCATGCATGATACTTTCTGTTGACGAGACTGTCCAGAATCCACAGA
GTGAATCGTCGCAACCTGCTCCCATGGGGGGACGTGGTCCCGGTGGGGGT
ATGGGCGGAATGGGCGGAATGATGGCTGGTGCCGGTCGTGGCGTTAGAAA
ATTCAAAGGACGAGGAGGACGCTGA
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protein sequence of Ggra9236.t1

>Ggra9236.t1 ID=Ggra9236.t1|Name=Ggra9236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=575bp
MSQFLAPQIVFLKEGTDTSQGLGQLVSNINACLAIVDILRTTLGPRGMDK
LINEGKGKVTISNDGATILKLLDITHPAARTLVDIAKSQDAEVGDGTTSV
TLLAGEMLKNCKDYVQDGLHPRTIIRAYRKAALLAVERVRELAIDIHGKD
AKETRLLLQRCAATSLNSKLIAHHKEFFSSIVTDAVLSLDEDLDLSMIGI
KKVQGGSATDSMLVKGVAFKKTFSYAGFEQQPKKFVNPRVITLNIELELK
AEKENAEVRVDSTKEYQAIVDAEWDIIYEKLDKIVKTGAKVVLSRLAIGD
LATQYFADRDIFCAGRVAEADLSRVTRAVGGVVQTTMNSVVESDYDAILG
TCELFEEVQIGNERYNMFTGCPKTKTATIIVRGGSEQFMAETERSLHDSI
MIARRTIKHSTAVAGGGAIEMELSRFLRDYSLKVHGKEQLLILAFAKALE
VIPRTLSDNAGFDSTDILNKLRAKHATGEDGKWYGVDIEEAGICNTWDSF
VWEPALVKINAISAATEAACMILSVDETVQNPQSESSQPAPMGGRGPGGG
MGGMGGMMAGAGRGVRKFKGRGGR*
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mRNA from alignment at tig00000075_pilon:459767..461582-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9236.t1 ID=Ggra9236.t1|Name=Ggra9236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1816bp|location=Sequence derived from alignment at tig00000075_pilon:459767..461582- (Gracilaria gracilis GNS1m male)
ATGAGCCAGTTTCTCGCCCCCCAGATCGTGTTCCTTAAGGAAGGAACTGA
TACAAGTCAGGGTCTTGGCCAACTTGGTACGTTTGATCCAACATGCGTCA
TATATCATTATTTGATCAGAGCAGGAACTAGGAAAGTAACTGATATGCTG
ACCATCTGTTACTCCAGTCTCGAATATAAATGCATGCCTCGCTATCGTCG
ATATATTGCGAACCACGTTGGGGCCGAGGGGTATGGATAAGCTCATCAAT
GAAGGGAAGGGCAAAGTAACTATATCTAATGATGGAGCTACAATCCTGAA
ACTGCTGGATATCACTCATCCTGCTGCACGCACTCTGGTGGATATAGCAA
AATCGCAAGACGCTGAAGTTGGAGATGGGACAACGTCTGTTACGCTTTTG
GCAGGCGAAATGCTCAAAAACTGCAAGGATTACGTACAAGACGGCCTACA
CCCTCGTACTATTATTCGGGCGTATCGAAAAGCCGCGTTGCTCGCAGTGG
AGCGTGTTCGAGAGCTTGCTATTGATATTCATGGAAAGGACGCCAAAGAA
ACACGATTGCTATTGCAGAGATGTGCAGCGACATCCTTAAACTCGAAGCT
GATTGCCCACCACAAGGAATTTTTCTCGAGCATTGTTACCGATGCTGTGC
TTTCGCTTGACGAGGATCTTGATCTGTCGATGATTGGTATCAAGAAAGTT
CAAGGCGGATCTGCTACCGATTCGATGCTTGTGAAGGGCGTTGCTTTCAA
GAAGACATTTTCGTACGCGGGTTTCGAGCAACAACCGAAGAAGTTTGTGA
ACCCTAGAGTTATAACATTGAACATAGAGTTGGAGCTAAAAGCTGAAAAG
GAGAATGCTGAAGTAAGAGTAGATTCAACGAAAGAGTATCAAGCCATTGT
GGACGCCGAGTGGGACATTATCTATGAAAAACTGGACAAGATCGTTAAGA
CTGGCGCGAAGGTAGTACTGTCTCGTTTGGCAATTGGAGACCTTGCTACT
CAGTACTTTGCAGATAGGGACATTTTCTGTGCCGGAAGAGTTGCCGAGGC
TGATTTGAGTCGTGTTACGAGAGCTGTAGGCGGGGTAGTTCAAACCACCA
TGAACAGTGTGGTGGAGTCAGACTACGATGCAATTCTTGGCACCTGCGAG
CTTTTCGAAGAGGTCCAGATTGGGAACGAACGGTATAACATGTTCACAGG
ATGCCCAAAAACAAAAACTGCAACCATTATTGTAAGGGGTGGTTCGGAGC
AGTTCATGGCAGAAACAGAACGTTCTTTGCATGATTCAATCATGATTGCT
CGAAGGACGATCAAGCATTCAACTGCCGTGGCAGGAGGAGGTGCAATCGA
AATGGAGCTAAGTCGTTTCTTACGAGATTACTCCCTCAAGGTGCATGGTA
AGGAGCAACTCTTAATTCTTGCCTTTGCCAAGGCCCTCGAAGTTATCCCG
AGAACTCTCAGTGACAACGCTGGATTCGACTCCACTGACATTCTTAATAA
ACTTCGAGCGAAGCATGCTACTGGGGAGGACGGTAAGTGGTATGGCGTGG
ATATAGAAGAAGCAGGAATATGCAACACATGGGATTCCTTTGTATGGGAA
CCGGCTCTGGTTAAGATTAACGCCATCAGCGCTGCAACTGAAGCTGCATG
CATGATACTTTCTGTTGACGAGACTGTCCAGAATCCACAGAGTGAATCGT
CGCAACCTGCTCCCATGGGGGGACGTGGTCCCGGTGGGGGTATGGGCGGA
ATGGGCGGAATGATGGCTGGTGCCGGTCGTGGCGTTAGAAAATTCAAAGG
ACGAGGAGGACGCTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:459767..461582-

>Ggra9236.t1 ID=Ggra9236.t1|Name=Ggra9236.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00000075_pilon:459767..461582- (Gracilaria gracilis GNS1m male)
ATGAGCCAGTTTCTCGCCCCCCAGATCGTGTTCCTTAAGGAAGGAACTGA
TACAAGTCAGGGTCTTGGCCAACTTGTCTCGAATATAAATGCATGCCTCG
CTATCGTCGATATATTGCGAACCACGTTGGGGCCGAGGGGTATGGATAAG
CTCATCAATGAAGGGAAGGGCAAAGTAACTATATCTAATGATGGAGCTAC
AATCCTGAAACTGCTGGATATCACTCATCCTGCTGCACGCACTCTGGTGG
ATATAGCAAAATCGCAAGACGCTGAAGTTGGAGATGGGACAACGTCTGTT
ACGCTTTTGGCAGGCGAAATGCTCAAAAACTGCAAGGATTACGTACAAGA
CGGCCTACACCCTCGTACTATTATTCGGGCGTATCGAAAAGCCGCGTTGC
TCGCAGTGGAGCGTGTTCGAGAGCTTGCTATTGATATTCATGGAAAGGAC
GCCAAAGAAACACGATTGCTATTGCAGAGATGTGCAGCGACATCCTTAAA
CTCGAAGCTGATTGCCCACCACAAGGAATTTTTCTCGAGCATTGTTACCG
ATGCTGTGCTTTCGCTTGACGAGGATCTTGATCTGTCGATGATTGGTATC
AAGAAAGTTCAAGGCGGATCTGCTACCGATTCGATGCTTGTGAAGGGCGT
TGCTTTCAAGAAGACATTTTCGTACGCGGGTTTCGAGCAACAACCGAAGA
AGTTTGTGAACCCTAGAGTTATAACATTGAACATAGAGTTGGAGCTAAAA
GCTGAAAAGGAGAATGCTGAAGTAAGAGTAGATTCAACGAAAGAGTATCA
AGCCATTGTGGACGCCGAGTGGGACATTATCTATGAAAAACTGGACAAGA
TCGTTAAGACTGGCGCGAAGGTAGTACTGTCTCGTTTGGCAATTGGAGAC
CTTGCTACTCAGTACTTTGCAGATAGGGACATTTTCTGTGCCGGAAGAGT
TGCCGAGGCTGATTTGAGTCGTGTTACGAGAGCTGTAGGCGGGGTAGTTC
AAACCACCATGAACAGTGTGGTGGAGTCAGACTACGATGCAATTCTTGGC
ACCTGCGAGCTTTTCGAAGAGGTCCAGATTGGGAACGAACGGTATAACAT
GTTCACAGGATGCCCAAAAACAAAAACTGCAACCATTATTGTAAGGGGTG
GTTCGGAGCAGTTCATGGCAGAAACAGAACGTTCTTTGCATGATTCAATC
ATGATTGCTCGAAGGACGATCAAGCATTCAACTGCCGTGGCAGGAGGAGG
TGCAATCGAAATGGAGCTAAGTCGTTTCTTACGAGATTACTCCCTCAAGG
TGCATGGTAAGGAGCAACTCTTAATTCTTGCCTTTGCCAAGGCCCTCGAA
GTTATCCCGAGAACTCTCAGTGACAACGCTGGATTCGACTCCACTGACAT
TCTTAATAAACTTCGAGCGAAGCATGCTACTGGGGAGGACGGTAAGTGGT
ATGGCGTGGATATAGAAGAAGCAGGAATATGCAACACATGGGATTCCTTT
GTATGGGAACCGGCTCTGGTTAAGATTAACGCCATCAGCGCTGCAACTGA
AGCTGCATGCATGATACTTTCTGTTGACGAGACTGTCCAGAATCCACAGA
GTGAATCGTCGCAACCTGCTCCCATGGGGGGACGTGGTCCCGGTGGGGGT
ATGGGCGGAATGGGCGGAATGATGGCTGGTGCCGGTCGTGGCGTTAGAAA
ATTCAAAGGACGAGGAGGACGCTGA
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