Ggra9230.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9230.t1
Unique Name	Ggra9230.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:432231..434216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703270.1
Preferred name	AVL9
PFAMs	Avl9,SPA
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006892,GO:0006928,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0016477,GO:0030427,GO:0031410,GO:0031982,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048193,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055037,GO:0097708
Evalue	4.13e-72
EggNOG OGs	KOG3823@1\|root,KOG3823@2759\|Eukaryota
Description	cell migration
COG category	EH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9230	Ggra9230	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 432231..434216 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9230.t1.stop1	Ggra9230.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 432231..432233 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9230.t1.CDS1	Ggra9230.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 432231..434216 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9230.t1.exon1	Ggra9230.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 432231..434216 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9230.t1.start1	Ggra9230.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 434214..434216 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9230.t1	Ggra9230.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 432231..434216 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:432231..434216-
coding sequence from alignment at tig00000075_pilon:432231..434216-

mRNA sequence

>Ggra9230.t1 ID=Ggra9230.t1|Name=Ggra9230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=662bp
MTPPAQSPDASIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISTEFLNESDSHQRSGAWGTLPAEWAFMPLMALPDG
VHEHHQDLVFFTLPPDVHCVSYFQQVDAVDAKTHSASAGQLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQADFARTDVLSSLYHSLNV
SLSRPSLNHADTLFHGLDLRAILRRLGPQMLAVIKLILLERRIVIYSQPV
NHASNAVIALASIFPGALDSISPTMPSLEATEKYGAGFPLALFSSQGRIV
LQPHAPLPLISELIPNNLSNACLLGTSHNVGLLLSSAAASAARKAASSKK
RKSVATPVERTRELNQSSSAPAGFATPEKNRKSVFLEGSRSSVSPFTPLA
LTSDQRTDSSPTLERVAGGVPIVDALVNLSSGKVSVSGALEPLCRITRQE
RRFMRDLMVSAAASSSASVSASGATGTFIGSDDYIRERLRLYMSNFLRSV
AAVDGVRGGPLAGETYSAEMVNDFDFSMFEPYNIHFVRSWMTTRNAGLWS
RACPLQGKVFIPPPKPEVDEALTEDTLIPVDRVAAGLSGLRQNVADLGRF
SSIVSAKAAEGLSSLFKRIEQEVGKMDVGGQPSPHTPASTGRVSMPDLNP
SESSRTKSAPR*

spliced messenger RNA

>Ggra9230.t1 ID=Ggra9230.t1|Name=Ggra9230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000075_pilon:432231..434216- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCACCTGCTCAATCTCCAGACGCCTCCATCGTCGCTCACGTCGT
AGTAGTCGGCTTTCACGCTCAGCTCGGTCATCGCATAGAATTCGCTTATC
CTCGTCTACGCGGCACTCCAATTCTACGCTCTCCAAAGATCTCAGACACC
TCTGATATTTCAGCTGATGTTTCGCCCACAATATCGCGTCGAATCAGTAC
CGAGTTTCTGAACGAGTCTGACTCACACCAACGCTCAGGAGCATGGGGCA
CACTGCCAGCAGAATGGGCTTTTATGCCGCTCATGGCGCTCCCGGACGGC
GTCCACGAGCACCATCAAGACCTGGTCTTTTTCACTCTCCCTCCGGATGT
GCATTGCGTTTCCTACTTCCAGCAGGTTGATGCTGTCGATGCAAAGACCC
ATTCTGCATCTGCAGGGCAACTGTACGAACAAGGAGTCGCAGCCAGAGGT
TCTGTACAGAAGTCTGTCGTTCTTCTCTGCAGGAAACCATTATTTGGAGT
GCTTTCGGATCGATTAGTACCTGCCGTACGCGCATATTTCGACCAAGCAG
ATTTTGCTCGTACTGATGTTCTATCATCACTTTATCATTCTCTCAACGTG
TCGCTTTCGAGACCATCTTTAAACCATGCCGACACATTATTTCATGGACT
CGACTTGCGTGCGATACTCCGTCGTCTAGGACCCCAAATGTTGGCTGTCA
TTAAGCTCATTCTTCTTGAGCGCAGAATAGTAATATATTCGCAACCTGTT
AACCACGCCTCAAATGCGGTCATCGCCTTGGCCTCCATTTTCCCGGGGGC
GCTTGATTCTATTTCACCAACTATGCCCTCTCTCGAAGCGACGGAGAAAT
ACGGCGCTGGCTTCCCGCTTGCTCTTTTTTCCTCCCAAGGACGTATCGTT
CTGCAACCACATGCACCGCTGCCTCTCATTTCTGAGCTAATTCCGAACAA
TTTGTCGAATGCTTGTTTGCTGGGCACTTCTCACAATGTTGGACTTTTGT
TGTCTTCTGCAGCCGCGTCAGCTGCAAGAAAAGCTGCATCCAGCAAGAAG
AGAAAGTCAGTGGCTACGCCTGTAGAGAGAACGCGGGAATTGAACCAGTC
TAGTTCGGCTCCAGCCGGGTTTGCTACACCTGAGAAGAATCGGAAGTCGG
TCTTCCTTGAGGGCTCTAGAAGTTCTGTAAGCCCTTTTACCCCTCTCGCA
CTCACAAGCGATCAGAGAACAGACTCTTCCCCTACATTAGAACGTGTAGC
CGGGGGAGTTCCTATCGTTGACGCCCTTGTCAACCTATCCAGTGGAAAAG
TTTCTGTTTCTGGAGCACTTGAACCTCTGTGTCGGATAACAAGACAAGAA
CGGCGGTTTATGCGGGATTTGATGGTTTCAGCAGCAGCCTCTTCATCGGC
TTCTGTGTCGGCATCAGGTGCAACAGGAACATTTATCGGTTCAGATGATT
ACATCCGTGAGCGCCTTCGATTGTATATGAGCAACTTTTTGCGATCGGTC
GCCGCTGTTGACGGTGTTCGCGGTGGGCCGCTCGCTGGTGAGACGTATAG
CGCGGAAATGGTTAATGATTTCGACTTCTCAATGTTTGAGCCATATAATA
TTCACTTTGTTCGTTCGTGGATGACAACACGAAACGCGGGATTATGGTCG
AGAGCTTGTCCTCTGCAAGGCAAAGTCTTCATTCCGCCCCCGAAACCAGA
AGTAGACGAAGCTCTTACAGAGGACACTCTGATACCTGTCGACAGAGTGG
CAGCTGGACTGTCAGGCTTGAGACAAAATGTAGCGGACTTGGGACGGTTT
TCGAGTATTGTCTCCGCTAAGGCCGCGGAGGGATTATCCAGTCTCTTCAA
ACGCATTGAACAGGAGGTAGGAAAAATGGATGTTGGGGGACAGCCTTCCC
CCCACACACCGGCGTCTACTGGGCGCGTGAGTATGCCAGACCTCAACCCA
AGCGAATCTTCTCGAACAAAGTCGGCGCCTCGATAG

protein sequence of Ggra9230.t1

>Ggra9230.t1 ID=Ggra9230.t1|Name=Ggra9230.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=662bp
MTPPAQSPDASIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISTEFLNESDSHQRSGAWGTLPAEWAFMPLMALPDG
VHEHHQDLVFFTLPPDVHCVSYFQQVDAVDAKTHSASAGQLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQADFARTDVLSSLYHSLNV
SLSRPSLNHADTLFHGLDLRAILRRLGPQMLAVIKLILLERRIVIYSQPV
NHASNAVIALASIFPGALDSISPTMPSLEATEKYGAGFPLALFSSQGRIV
LQPHAPLPLISELIPNNLSNACLLGTSHNVGLLLSSAAASAARKAASSKK
RKSVATPVERTRELNQSSSAPAGFATPEKNRKSVFLEGSRSSVSPFTPLA
LTSDQRTDSSPTLERVAGGVPIVDALVNLSSGKVSVSGALEPLCRITRQE
RRFMRDLMVSAAASSSASVSASGATGTFIGSDDYIRERLRLYMSNFLRSV
AAVDGVRGGPLAGETYSAEMVNDFDFSMFEPYNIHFVRSWMTTRNAGLWS
RACPLQGKVFIPPPKPEVDEALTEDTLIPVDRVAAGLSGLRQNVADLGRF
SSIVSAKAAEGLSSLFKRIEQEVGKMDVGGQPSPHTPASTGRVSMPDLNP
SESSRTKSAPR*

mRNA from alignment at tig00000075_pilon:432231..434216-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9230.t1 ID=Ggra9230.t1|Name=Ggra9230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000075_pilon:432231..434216- (Gracilaria gracilis GNS1m male)
ATGACGCCACCTGCTCAATCTCCAGACGCCTCCATCGTCGCTCACGTCGT
AGTAGTCGGCTTTCACGCTCAGCTCGGTCATCGCATAGAATTCGCTTATC
CTCGTCTACGCGGCACTCCAATTCTACGCTCTCCAAAGATCTCAGACACC
TCTGATATTTCAGCTGATGTTTCGCCCACAATATCGCGTCGAATCAGTAC
CGAGTTTCTGAACGAGTCTGACTCACACCAACGCTCAGGAGCATGGGGCA
CACTGCCAGCAGAATGGGCTTTTATGCCGCTCATGGCGCTCCCGGACGGC
GTCCACGAGCACCATCAAGACCTGGTCTTTTTCACTCTCCCTCCGGATGT
GCATTGCGTTTCCTACTTCCAGCAGGTTGATGCTGTCGATGCAAAGACCC
ATTCTGCATCTGCAGGGCAACTGTACGAACAAGGAGTCGCAGCCAGAGGT
TCTGTACAGAAGTCTGTCGTTCTTCTCTGCAGGAAACCATTATTTGGAGT
GCTTTCGGATCGATTAGTACCTGCCGTACGCGCATATTTCGACCAAGCAG
ATTTTGCTCGTACTGATGTTCTATCATCACTTTATCATTCTCTCAACGTG
TCGCTTTCGAGACCATCTTTAAACCATGCCGACACATTATTTCATGGACT
CGACTTGCGTGCGATACTCCGTCGTCTAGGACCCCAAATGTTGGCTGTCA
TTAAGCTCATTCTTCTTGAGCGCAGAATAGTAATATATTCGCAACCTGTT
AACCACGCCTCAAATGCGGTCATCGCCTTGGCCTCCATTTTCCCGGGGGC
GCTTGATTCTATTTCACCAACTATGCCCTCTCTCGAAGCGACGGAGAAAT
ACGGCGCTGGCTTCCCGCTTGCTCTTTTTTCCTCCCAAGGACGTATCGTT
CTGCAACCACATGCACCGCTGCCTCTCATTTCTGAGCTAATTCCGAACAA
TTTGTCGAATGCTTGTTTGCTGGGCACTTCTCACAATGTTGGACTTTTGT
TGTCTTCTGCAGCCGCGTCAGCTGCAAGAAAAGCTGCATCCAGCAAGAAG
AGAAAGTCAGTGGCTACGCCTGTAGAGAGAACGCGGGAATTGAACCAGTC
TAGTTCGGCTCCAGCCGGGTTTGCTACACCTGAGAAGAATCGGAAGTCGG
TCTTCCTTGAGGGCTCTAGAAGTTCTGTAAGCCCTTTTACCCCTCTCGCA
CTCACAAGCGATCAGAGAACAGACTCTTCCCCTACATTAGAACGTGTAGC
CGGGGGAGTTCCTATCGTTGACGCCCTTGTCAACCTATCCAGTGGAAAAG
TTTCTGTTTCTGGAGCACTTGAACCTCTGTGTCGGATAACAAGACAAGAA
CGGCGGTTTATGCGGGATTTGATGGTTTCAGCAGCAGCCTCTTCATCGGC
TTCTGTGTCGGCATCAGGTGCAACAGGAACATTTATCGGTTCAGATGATT
ACATCCGTGAGCGCCTTCGATTGTATATGAGCAACTTTTTGCGATCGGTC
GCCGCTGTTGACGGTGTTCGCGGTGGGCCGCTCGCTGGTGAGACGTATAG
CGCGGAAATGGTTAATGATTTCGACTTCTCAATGTTTGAGCCATATAATA
TTCACTTTGTTCGTTCGTGGATGACAACACGAAACGCGGGATTATGGTCG
AGAGCTTGTCCTCTGCAAGGCAAAGTCTTCATTCCGCCCCCGAAACCAGA
AGTAGACGAAGCTCTTACAGAGGACACTCTGATACCTGTCGACAGAGTGG
CAGCTGGACTGTCAGGCTTGAGACAAAATGTAGCGGACTTGGGACGGTTT
TCGAGTATTGTCTCCGCTAAGGCCGCGGAGGGATTATCCAGTCTCTTCAA
ACGCATTGAACAGGAGGTAGGAAAAATGGATGTTGGGGGACAGCCTTCCC
CCCACACACCGGCGTCTACTGGGCGCGTGAGTATGCCAGACCTCAACCCA
AGCGAATCTTCTCGAACAAAGTCGGCGCCTCGATAG

Coding sequence (CDS) from alignment at tig00000075_pilon:432231..434216-

>Ggra9230.t1 ID=Ggra9230.t1|Name=Ggra9230.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1986bp|location=Sequence derived from alignment at tig00000075_pilon:432231..434216- (Gracilaria gracilis GNS1m male)
ATGACGCCACCTGCTCAATCTCCAGACGCCTCCATCGTCGCTCACGTCGT
AGTAGTCGGCTTTCACGCTCAGCTCGGTCATCGCATAGAATTCGCTTATC
CTCGTCTACGCGGCACTCCAATTCTACGCTCTCCAAAGATCTCAGACACC
TCTGATATTTCAGCTGATGTTTCGCCCACAATATCGCGTCGAATCAGTAC
CGAGTTTCTGAACGAGTCTGACTCACACCAACGCTCAGGAGCATGGGGCA
CACTGCCAGCAGAATGGGCTTTTATGCCGCTCATGGCGCTCCCGGACGGC
GTCCACGAGCACCATCAAGACCTGGTCTTTTTCACTCTCCCTCCGGATGT
GCATTGCGTTTCCTACTTCCAGCAGGTTGATGCTGTCGATGCAAAGACCC
ATTCTGCATCTGCAGGGCAACTGTACGAACAAGGAGTCGCAGCCAGAGGT
TCTGTACAGAAGTCTGTCGTTCTTCTCTGCAGGAAACCATTATTTGGAGT
GCTTTCGGATCGATTAGTACCTGCCGTACGCGCATATTTCGACCAAGCAG
ATTTTGCTCGTACTGATGTTCTATCATCACTTTATCATTCTCTCAACGTG
TCGCTTTCGAGACCATCTTTAAACCATGCCGACACATTATTTCATGGACT
CGACTTGCGTGCGATACTCCGTCGTCTAGGACCCCAAATGTTGGCTGTCA
TTAAGCTCATTCTTCTTGAGCGCAGAATAGTAATATATTCGCAACCTGTT
AACCACGCCTCAAATGCGGTCATCGCCTTGGCCTCCATTTTCCCGGGGGC
GCTTGATTCTATTTCACCAACTATGCCCTCTCTCGAAGCGACGGAGAAAT
ACGGCGCTGGCTTCCCGCTTGCTCTTTTTTCCTCCCAAGGACGTATCGTT
CTGCAACCACATGCACCGCTGCCTCTCATTTCTGAGCTAATTCCGAACAA
TTTGTCGAATGCTTGTTTGCTGGGCACTTCTCACAATGTTGGACTTTTGT
TGTCTTCTGCAGCCGCGTCAGCTGCAAGAAAAGCTGCATCCAGCAAGAAG
AGAAAGTCAGTGGCTACGCCTGTAGAGAGAACGCGGGAATTGAACCAGTC
TAGTTCGGCTCCAGCCGGGTTTGCTACACCTGAGAAGAATCGGAAGTCGG
TCTTCCTTGAGGGCTCTAGAAGTTCTGTAAGCCCTTTTACCCCTCTCGCA
CTCACAAGCGATCAGAGAACAGACTCTTCCCCTACATTAGAACGTGTAGC
CGGGGGAGTTCCTATCGTTGACGCCCTTGTCAACCTATCCAGTGGAAAAG
TTTCTGTTTCTGGAGCACTTGAACCTCTGTGTCGGATAACAAGACAAGAA
CGGCGGTTTATGCGGGATTTGATGGTTTCAGCAGCAGCCTCTTCATCGGC
TTCTGTGTCGGCATCAGGTGCAACAGGAACATTTATCGGTTCAGATGATT
ACATCCGTGAGCGCCTTCGATTGTATATGAGCAACTTTTTGCGATCGGTC
GCCGCTGTTGACGGTGTTCGCGGTGGGCCGCTCGCTGGTGAGACGTATAG
CGCGGAAATGGTTAATGATTTCGACTTCTCAATGTTTGAGCCATATAATA
TTCACTTTGTTCGTTCGTGGATGACAACACGAAACGCGGGATTATGGTCG
AGAGCTTGTCCTCTGCAAGGCAAAGTCTTCATTCCGCCCCCGAAACCAGA
AGTAGACGAAGCTCTTACAGAGGACACTCTGATACCTGTCGACAGAGTGG
CAGCTGGACTGTCAGGCTTGAGACAAAATGTAGCGGACTTGGGACGGTTT
TCGAGTATTGTCTCCGCTAAGGCCGCGGAGGGATTATCCAGTCTCTTCAA
ACGCATTGAACAGGAGGTAGGAAAAATGGATGTTGGGGGACAGCCTTCCC
CCCACACACCGGCGTCTACTGGGCGCGTGAGTATGCCAGACCTCAACCCA
AGCGAATCTTCTCGAACAAAGTCGGCGCCTCGATAG