Ggra923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra923.t1
Unique NameGgra923.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:543097..544657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra923Ggra923Gracilaria gracilis GNS1m malegenetig00000049_pilon 543097..544657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1Ggra923.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 543097..544657 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1.start1Ggra923.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 543097..543099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1.CDS1Ggra923.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 543097..543546 +
Ggra923.t1.CDS2Ggra923.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 543848..544657 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1.exon1Ggra923.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 543097..543546 +
Ggra923.t1.exon2Ggra923.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 543848..544657 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1.intron1Ggra923.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 543547..543847 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra923.t1.stop1Ggra923.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 544655..544657 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra923.t1 ID=Ggra923.t1|Name=Ggra923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MCDALCKDSFMKQYMTQRRDGDTIHIVAHGKGPGENEVRYSVSSSFAPAY
EVNYVLEVDEDEDIYAYGVRPDRGLKCYFTLHNPLPFDLSDVQIVFCSQQ
KRSNLSFCPYSALEENPKQGEDAEDIASGSDTRLSVVEEPLENLVDEFSE
LSDNSDIEWNAYKQVHIGDMHSCYISQNQLSVWREKTKTLIGRIQNKSDQ
EVDIFVHHCLRSGARREGTAEGVLRRGEWLHEREGDKMEPYTHSVDMRGV
AYMFKLAPYETPWVTIRERLPFEDKHMILEGLESETTCHLEVRELVPFAT
LQSLRWILSVQRESEQLKMEQSLHQMKLKKIEVYRTMNPRQPNDVQAEAE
QKEEKRGLLVEEELQEYLMRTTKAKEARLVLKRLVTEVEYRLSEVQRETA
VIKRQMGHLELTGGVTAHE*
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spliced messenger RNA

>Ggra923.t1 ID=Ggra923.t1|Name=Ggra923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000049_pilon:543097..544657+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGACGCACTTTGCAAAGACAGTTTTATGAAGCAGTATATGACACA
AAGAAGAGATGGAGATACGATTCACATAGTCGCACATGGTAAAGGCCCAG
GAGAAAACGAGGTTAGATATTCGGTATCGAGCTCATTTGCCCCAGCGTAC
GAGGTAAATTACGTGCTGGAAGTAGATGAGGACGAAGACATCTACGCATA
TGGTGTTCGCCCAGATCGGGGTCTCAAATGCTATTTCACGCTTCACAATC
CCCTGCCATTCGATCTCTCTGATGTCCAAATCGTATTCTGCTCGCAACAG
AAGCGATCCAACCTGTCTTTTTGTCCGTATAGTGCTCTCGAAGAGAATCC
AAAGCAAGGCGAGGACGCTGAAGATATTGCATCTGGCTCTGACACAAGGT
TGAGCGTCGTGGAAGAGCCGTTGGAGAATCTTGTTGATGAGTTTAGTGAG
CTTTCTGATAATTCGGATATCGAATGGAATGCATACAAACAGGTGCACAT
TGGCGACATGCACTCCTGCTATATATCACAAAATCAATTGAGCGTATGGA
GGGAAAAGACTAAGACGTTGATCGGCCGAATTCAGAACAAGAGTGATCAG
GAAGTTGATATTTTTGTGCATCACTGTTTACGCTCAGGAGCAAGGAGAGA
GGGCACCGCTGAAGGTGTTCTAAGGAGAGGGGAATGGTTGCATGAGCGTG
AGGGAGACAAAATGGAGCCGTATACGCACTCTGTTGACATGAGAGGAGTT
GCCTACATGTTCAAACTTGCACCTTATGAGACGCCCTGGGTGACAATCCG
AGAGCGTCTACCATTTGAGGACAAGCACATGATTCTTGAAGGCTTGGAGA
GCGAGACGACTTGCCATCTAGAAGTGAGAGAACTTGTTCCCTTCGCGACG
TTGCAGTCGTTGCGTTGGATCTTGTCTGTTCAAAGGGAGTCAGAGCAACT
GAAGATGGAACAATCGCTGCACCAAATGAAACTCAAGAAGATTGAAGTCT
ATCGCACTATGAACCCAAGGCAGCCAAATGACGTCCAGGCCGAGGCTGAA
CAGAAAGAGGAAAAGCGTGGCCTGTTGGTGGAGGAAGAGCTGCAGGAATA
CTTGATGCGCACAACGAAGGCGAAGGAGGCGCGCTTGGTGCTTAAACGCC
TAGTGACTGAAGTTGAGTACAGGCTGTCCGAGGTACAGCGGGAGACAGCG
GTTATCAAAAGGCAAATGGGGCACCTGGAGCTGACTGGGGGCGTCACTGC
TCATGAGTGA
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protein sequence of Ggra923.t1

>Ggra923.t1 ID=Ggra923.t1|Name=Ggra923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MCDALCKDSFMKQYMTQRRDGDTIHIVAHGKGPGENEVRYSVSSSFAPAY
EVNYVLEVDEDEDIYAYGVRPDRGLKCYFTLHNPLPFDLSDVQIVFCSQQ
KRSNLSFCPYSALEENPKQGEDAEDIASGSDTRLSVVEEPLENLVDEFSE
LSDNSDIEWNAYKQVHIGDMHSCYISQNQLSVWREKTKTLIGRIQNKSDQ
EVDIFVHHCLRSGARREGTAEGVLRRGEWLHEREGDKMEPYTHSVDMRGV
AYMFKLAPYETPWVTIRERLPFEDKHMILEGLESETTCHLEVRELVPFAT
LQSLRWILSVQRESEQLKMEQSLHQMKLKKIEVYRTMNPRQPNDVQAEAE
QKEEKRGLLVEEELQEYLMRTTKAKEARLVLKRLVTEVEYRLSEVQRETA
VIKRQMGHLELTGGVTAHE*
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mRNA from alignment at tig00000049_pilon:543097..544657+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra923.t1 ID=Ggra923.t1|Name=Ggra923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1561bp|location=Sequence derived from alignment at tig00000049_pilon:543097..544657+ (Gracilaria gracilis GNS1m male)
ATGTGTGACGCACTTTGCAAAGACAGTTTTATGAAGCAGTATATGACACA
AAGAAGAGATGGAGATACGATTCACATAGTCGCACATGGTAAAGGCCCAG
GAGAAAACGAGGTTAGATATTCGGTATCGAGCTCATTTGCCCCAGCGTAC
GAGGTAAATTACGTGCTGGAAGTAGATGAGGACGAAGACATCTACGCATA
TGGTGTTCGCCCAGATCGGGGTCTCAAATGCTATTTCACGCTTCACAATC
CCCTGCCATTCGATCTCTCTGATGTCCAAATCGTATTCTGCTCGCAACAG
AAGCGATCCAACCTGTCTTTTTGTCCGTATAGTGCTCTCGAAGAGAATCC
AAAGCAAGGCGAGGACGCTGAAGATATTGCATCTGGCTCTGACACAAGGT
TGAGCGTCGTGGAAGAGCCGTTGGAGAATCTTGTTGATGAGTTTAGTGAG
GTTAGCTCATCACCTTCAATGAAACATAATTATGAGCACCAGGGTATGTG
AGGCACGAGATTCTTGTGAAAGTTAGTCTACGGATGAATGAATTTGTTCG
AATGATGATTTTTGAGAAGATGTGCTCAGGGGGCATAGTTCGAACCGTTC
AAACCCAAACAGAAGACAATTCATGCGCTGCTGCCGCCCTATATATATTA
CACGAACAACTTGAAGCAGGGCATCTTTATGTTAAATCGAAATGCAGTGG
TATTTCAAAACAGTTCCACGTTATTCCTCTTGCTCGCAATGATTGCGACA
GCTTTCTGATAATTCGGATATCGAATGGAATGCATACAAACAGGTGCACA
TTGGCGACATGCACTCCTGCTATATATCACAAAATCAATTGAGCGTATGG
AGGGAAAAGACTAAGACGTTGATCGGCCGAATTCAGAACAAGAGTGATCA
GGAAGTTGATATTTTTGTGCATCACTGTTTACGCTCAGGAGCAAGGAGAG
AGGGCACCGCTGAAGGTGTTCTAAGGAGAGGGGAATGGTTGCATGAGCGT
GAGGGAGACAAAATGGAGCCGTATACGCACTCTGTTGACATGAGAGGAGT
TGCCTACATGTTCAAACTTGCACCTTATGAGACGCCCTGGGTGACAATCC
GAGAGCGTCTACCATTTGAGGACAAGCACATGATTCTTGAAGGCTTGGAG
AGCGAGACGACTTGCCATCTAGAAGTGAGAGAACTTGTTCCCTTCGCGAC
GTTGCAGTCGTTGCGTTGGATCTTGTCTGTTCAAAGGGAGTCAGAGCAAC
TGAAGATGGAACAATCGCTGCACCAAATGAAACTCAAGAAGATTGAAGTC
TATCGCACTATGAACCCAAGGCAGCCAAATGACGTCCAGGCCGAGGCTGA
ACAGAAAGAGGAAAAGCGTGGCCTGTTGGTGGAGGAAGAGCTGCAGGAAT
ACTTGATGCGCACAACGAAGGCGAAGGAGGCGCGCTTGGTGCTTAAACGC
CTAGTGACTGAAGTTGAGTACAGGCTGTCCGAGGTACAGCGGGAGACAGC
GGTTATCAAAAGGCAAATGGGGCACCTGGAGCTGACTGGGGGCGTCACTG
CTCATGAGTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:543097..544657+

>Ggra923.t1 ID=Ggra923.t1|Name=Ggra923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000049_pilon:543097..544657+ (Gracilaria gracilis GNS1m male)
ATGTGTGACGCACTTTGCAAAGACAGTTTTATGAAGCAGTATATGACACA
AAGAAGAGATGGAGATACGATTCACATAGTCGCACATGGTAAAGGCCCAG
GAGAAAACGAGGTTAGATATTCGGTATCGAGCTCATTTGCCCCAGCGTAC
GAGGTAAATTACGTGCTGGAAGTAGATGAGGACGAAGACATCTACGCATA
TGGTGTTCGCCCAGATCGGGGTCTCAAATGCTATTTCACGCTTCACAATC
CCCTGCCATTCGATCTCTCTGATGTCCAAATCGTATTCTGCTCGCAACAG
AAGCGATCCAACCTGTCTTTTTGTCCGTATAGTGCTCTCGAAGAGAATCC
AAAGCAAGGCGAGGACGCTGAAGATATTGCATCTGGCTCTGACACAAGGT
TGAGCGTCGTGGAAGAGCCGTTGGAGAATCTTGTTGATGAGTTTAGTGAG
CTTTCTGATAATTCGGATATCGAATGGAATGCATACAAACAGGTGCACAT
TGGCGACATGCACTCCTGCTATATATCACAAAATCAATTGAGCGTATGGA
GGGAAAAGACTAAGACGTTGATCGGCCGAATTCAGAACAAGAGTGATCAG
GAAGTTGATATTTTTGTGCATCACTGTTTACGCTCAGGAGCAAGGAGAGA
GGGCACCGCTGAAGGTGTTCTAAGGAGAGGGGAATGGTTGCATGAGCGTG
AGGGAGACAAAATGGAGCCGTATACGCACTCTGTTGACATGAGAGGAGTT
GCCTACATGTTCAAACTTGCACCTTATGAGACGCCCTGGGTGACAATCCG
AGAGCGTCTACCATTTGAGGACAAGCACATGATTCTTGAAGGCTTGGAGA
GCGAGACGACTTGCCATCTAGAAGTGAGAGAACTTGTTCCCTTCGCGACG
TTGCAGTCGTTGCGTTGGATCTTGTCTGTTCAAAGGGAGTCAGAGCAACT
GAAGATGGAACAATCGCTGCACCAAATGAAACTCAAGAAGATTGAAGTCT
ATCGCACTATGAACCCAAGGCAGCCAAATGACGTCCAGGCCGAGGCTGAA
CAGAAAGAGGAAAAGCGTGGCCTGTTGGTGGAGGAAGAGCTGCAGGAATA
CTTGATGCGCACAACGAAGGCGAAGGAGGCGCGCTTGGTGCTTAAACGCC
TAGTGACTGAAGTTGAGTACAGGCTGTCCGAGGTACAGCGGGAGACAGCG
GTTATCAAAAGGCAAATGGGGCACCTGGAGCTGACTGGGGGCGTCACTGC
TCATGAGTGA
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